Wall clock time and date at job start Wed Apr 1 2020 05:08:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35972 * 117.00076 * 2 1 4 4 C 1.38560 * 120.08244 * 0.27605 * 3 2 1 5 5 C 1.38238 * 120.01538 * 180.29410 * 4 3 2 6 6 C 1.38287 * 120.17519 * 359.73106 * 5 4 3 7 7 C 1.38194 * 120.16680 * 359.97031 * 6 5 4 8 8 C 1.38720 * 119.98634 * 0.02951 * 7 6 5 9 9 N 1.40117 * 120.09224 * 179.97438 * 8 7 6 10 10 C 1.46766 * 124.34548 * 89.99738 * 9 8 7 11 11 C 1.54480 * 105.47388 * 162.98578 * 10 9 8 12 12 C 1.54634 * 101.76494 * 25.41095 * 11 10 9 13 13 H 1.09000 * 110.48496 * 94.01553 * 12 11 10 14 14 N 1.46498 * 110.48952 * 216.52518 * 12 11 10 15 15 C 1.34774 * 120.00211 * 203.16022 * 14 12 11 16 16 O 1.21586 * 120.00048 * 0.02562 * 15 14 12 17 17 N 1.34773 * 119.99940 * 180.02562 * 15 14 12 18 18 C 1.46506 * 119.99969 * 180.02562 * 17 15 14 19 19 C 1.52998 * 109.47237 * 179.72043 * 18 17 15 20 20 C 1.50696 * 109.46969 * 179.97438 * 19 18 17 21 21 H 1.07997 * 120.00408 * 0.02562 * 20 19 18 22 22 C 1.37885 * 119.99883 * 180.02562 * 20 19 18 23 23 N 1.31508 * 119.99834 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99926 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47112 * 89.99781 * 24 22 20 26 26 H 1.48498 * 109.47011 * 210.00049 * 24 22 20 27 27 H 1.48494 * 109.47201 * 330.00023 * 24 22 20 28 28 C 1.34645 * 124.31815 * 270.12630 * 9 8 7 29 29 O 1.21298 * 125.07259 * 0.42186 * 28 9 8 30 30 H 1.09008 * 109.46591 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47057 * 299.99770 * 1 2 3 32 32 H 1.08991 * 109.47080 * 59.99949 * 1 2 3 33 33 H 1.08001 * 119.98980 * 0.02562 * 4 3 2 34 34 H 1.07998 * 119.91457 * 179.70145 * 5 4 3 35 35 H 1.08002 * 119.91155 * 179.97438 * 6 5 4 36 36 H 1.07998 * 120.00207 * 180.02562 * 7 6 5 37 37 H 1.08992 * 110.24897 * 43.98257 * 10 9 8 38 38 H 1.09006 * 110.24928 * 281.97967 * 10 9 8 39 39 H 1.09000 * 110.96781 * 267.29967 * 11 10 9 40 40 H 1.08998 * 111.00762 * 143.54497 * 11 10 9 41 41 H 0.97004 * 119.99747 * 23.16671 * 14 12 11 42 42 H 0.97005 * 120.00161 * 359.72198 * 17 15 14 43 43 H 1.09001 * 109.46512 * 299.72412 * 18 17 15 44 44 H 1.08998 * 109.47174 * 59.71534 * 18 17 15 45 45 H 1.09000 * 109.46986 * 299.99958 * 19 18 17 46 46 H 1.09002 * 109.46857 * 60.00093 * 19 18 17 47 47 H 0.96999 * 119.99905 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2934 2.3747 0.0058 5 6 1.9224 3.6056 -0.0004 6 6 3.3032 3.6806 -0.0067 7 6 4.0614 2.5253 -0.0063 8 6 3.4373 1.2864 -0.0001 9 7 4.2039 0.1135 -0.0002 10 6 4.6623 -0.5762 1.2115 11 6 5.0659 -1.9944 0.7508 12 6 5.4094 -1.7564 -0.7380 13 1 6.4773 -1.5742 -0.8587 14 7 4.9909 -2.9015 -1.5502 15 6 5.5781 -3.1337 -2.7409 16 8 6.4555 -2.3930 -3.1408 17 7 5.1927 -4.1869 -3.4883 18 6 5.8313 -4.4396 -4.7824 19 6 5.2192 -5.6895 -5.4179 20 6 5.8757 -5.9490 -6.7492 21 1 6.6522 -5.2888 -7.1063 22 6 5.4850 -7.0295 -7.5116 23 7 4.5391 -7.8332 -7.0770 24 14 6.2993 -7.3516 -9.1616 25 1 7.4799 -8.2312 -8.9677 26 1 5.3308 -8.0162 -10.0702 27 1 6.7345 -6.0635 -9.7587 28 6 4.6164 -0.5236 -1.1123 29 8 4.3861 -0.1640 -2.2476 30 1 -0.3633 -1.0278 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 0.2148 2.3195 0.0107 34 1 1.3339 4.5112 -0.0007 35 1 3.7902 4.6446 -0.0119 36 1 5.1396 2.5869 -0.0108 37 1 3.8551 -0.6323 1.9418 38 1 5.5221 -0.0591 1.6375 39 1 4.2325 -2.6895 0.8524 40 1 5.9374 -2.3504 1.3001 41 1 4.2912 -3.4926 -1.2311 42 1 4.4955 -4.7802 -3.1675 43 1 5.6734 -3.5837 -5.4387 44 1 6.9006 -4.5927 -4.6362 45 1 5.3772 -6.5453 -4.7615 46 1 4.1500 -5.5362 -5.5641 47 1 4.2640 -8.5930 -7.6135 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273616475.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:52 Heat of formation + Delta-G solvation = -92.914969 kcal Electronic energy + Delta-G solvation = -30041.988126 eV Core-core repulsion = 25803.279156 eV Total energy + Delta-G solvation = -4238.708970 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.19779 -41.09873 -40.30404 -38.39448 -37.59555 -36.70045 -35.73173 -34.82427 -33.08654 -31.41595 -31.18918 -29.83189 -28.18961 -28.07350 -26.50475 -24.26788 -23.19558 -23.14949 -22.69609 -22.16267 -20.88547 -19.61474 -19.15861 -18.46876 -18.27423 -17.83851 -17.43851 -17.07978 -16.70616 -16.50789 -16.42052 -16.06522 -15.93207 -15.44000 -15.21046 -15.10783 -14.98604 -14.77751 -14.64547 -14.36835 -14.24265 -13.63482 -13.54180 -13.22524 -13.03862 -13.01940 -12.94733 -12.65859 -12.52922 -12.26251 -12.14410 -12.10065 -12.05540 -11.68862 -11.58650 -11.51884 -11.23483 -10.60573 -10.34442 -9.99001 -9.95443 -9.72818 -9.21548 -8.24232 -6.34407 0.14142 0.36302 1.20268 1.41318 1.42350 1.53990 1.74480 1.94803 2.18928 2.29180 2.41440 2.64057 3.10246 3.26843 3.42834 3.48626 3.83227 3.87705 3.95977 4.02995 4.19397 4.31310 4.32510 4.34840 4.43713 4.47920 4.50564 4.52727 4.64482 4.67622 4.74769 4.84825 4.95423 5.00852 5.21279 5.28971 5.29559 5.35444 5.44973 5.50506 5.58680 5.59975 5.77457 5.79342 5.91488 5.99730 6.16983 6.35592 6.78060 7.06290 7.12491 7.34490 7.56990 8.87823 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016803 B = 0.002019 C = 0.001970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.974529 B =13867.542626 C =14207.217986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.332 6.332 3 C 0.115 3.885 4 C -0.209 4.209 5 C -0.073 4.073 6 C -0.152 4.152 7 C -0.086 4.086 8 C 0.077 3.923 9 N -0.566 5.566 10 C 0.106 3.894 11 C -0.115 4.115 12 C 0.136 3.864 13 H 0.115 0.885 14 N -0.715 5.715 15 C 0.700 3.300 16 O -0.632 6.632 17 N -0.731 5.731 18 C 0.161 3.839 19 C 0.026 3.974 20 C -0.547 4.547 21 H 0.057 0.943 22 C 0.007 3.993 23 N -0.926 5.926 24 Si 0.967 3.033 25 H -0.269 1.269 26 H -0.279 1.279 27 H -0.269 1.269 28 C 0.496 3.504 29 O -0.565 6.565 30 H 0.113 0.887 31 H 0.077 0.923 32 H 0.055 0.945 33 H 0.153 0.847 34 H 0.160 0.840 35 H 0.154 0.846 36 H 0.135 0.865 37 H 0.100 0.900 38 H 0.101 0.899 39 H 0.107 0.893 40 H 0.136 0.864 41 H 0.415 0.585 42 H 0.407 0.593 43 H 0.034 0.966 44 H 0.048 0.952 45 H 0.014 0.986 46 H 0.006 0.994 47 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.455 20.044 28.200 35.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.245 6.245 3 C 0.068 3.932 4 C -0.228 4.228 5 C -0.090 4.090 6 C -0.170 4.170 7 C -0.106 4.106 8 C -0.013 4.013 9 N -0.297 5.297 10 C -0.015 4.015 11 C -0.153 4.153 12 C 0.026 3.974 13 H 0.133 0.867 14 N -0.372 5.372 15 C 0.400 3.600 16 O -0.513 6.513 17 N -0.386 5.386 18 C 0.037 3.963 19 C -0.012 4.012 20 C -0.586 4.586 21 H 0.076 0.924 22 C -0.192 4.192 23 N -0.565 5.565 24 Si 0.791 3.209 25 H -0.195 1.195 26 H -0.204 1.204 27 H -0.193 1.193 28 C 0.283 3.717 29 O -0.441 6.441 30 H 0.131 0.869 31 H 0.095 0.905 32 H 0.074 0.926 33 H 0.171 0.829 34 H 0.178 0.822 35 H 0.172 0.828 36 H 0.153 0.847 37 H 0.118 0.882 38 H 0.119 0.881 39 H 0.126 0.874 40 H 0.155 0.845 41 H 0.253 0.747 42 H 0.243 0.757 43 H 0.053 0.947 44 H 0.066 0.934 45 H 0.032 0.968 46 H 0.024 0.976 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.832 20.560 27.187 34.974 hybrid contribution -0.628 -0.679 -1.091 1.430 sum -8.459 19.881 26.096 33.880 Atomic orbital electron populations 1.23334 0.76465 1.05425 1.02275 1.86098 1.23361 1.26715 1.88328 1.19566 0.91546 0.85723 0.96328 1.21515 1.01285 0.91652 1.08356 1.21447 0.94825 0.97861 0.94908 1.21332 0.94238 0.98570 1.02873 1.21405 1.00970 0.90935 0.97242 1.17090 0.87049 0.86598 1.10563 1.45546 1.51578 1.24355 1.08239 1.22471 1.01613 0.91579 0.85811 1.23013 1.05743 0.97061 0.89445 1.21513 0.99793 0.83093 0.93028 0.86698 1.44644 1.43172 1.30505 1.18917 1.16162 0.81677 0.81110 0.81038 1.90865 1.36394 1.50688 1.73313 1.45161 1.42986 1.29448 1.21010 1.21079 0.96030 0.97683 0.81551 1.19116 0.95492 0.91608 0.94961 1.21455 1.21179 1.11543 1.04393 0.92450 1.25881 0.95580 0.95553 1.02191 1.70055 1.30394 1.16272 1.39804 0.85423 0.78348 0.78496 0.78646 1.19472 1.20382 1.19338 1.22192 0.79243 0.86197 0.84084 1.90721 1.59080 1.70719 1.23586 0.86887 0.90453 0.92607 0.82897 0.82242 0.82798 0.84721 0.88159 0.88084 0.87449 0.84536 0.74684 0.75721 0.94732 0.93389 0.96807 0.97591 0.92498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 113.37 1.11 1.35 16 2 O -0.33 -7.15 10.24 -93.23 -0.95 -8.10 16 3 C 0.12 2.50 6.70 22.60 0.15 2.66 16 4 C -0.21 -3.32 9.04 22.35 0.20 -3.11 16 5 C -0.07 -0.95 10.04 22.28 0.22 -0.72 16 6 C -0.15 -2.21 10.04 22.27 0.22 -1.99 16 7 C -0.09 -1.69 9.96 22.37 0.22 -1.46 16 8 C 0.08 1.80 5.40 38.19 0.21 2.00 16 9 N -0.57 -12.86 2.70 -626.92 -1.69 -14.56 16 10 C 0.11 1.23 7.28 86.83 0.63 1.86 16 11 C -0.11 -1.20 6.87 31.65 0.22 -0.98 16 12 C 0.14 3.26 3.25 44.99 0.15 3.40 16 13 H 0.12 3.04 7.61 -2.39 -0.02 3.02 16 14 N -0.72 -19.70 5.15 -457.85 -2.36 -22.05 16 15 C 0.70 27.39 8.56 179.06 1.53 28.92 16 16 O -0.63 -30.67 16.02 -3.99 -0.06 -30.73 16 17 N -0.73 -28.48 5.56 -478.53 -2.66 -31.14 16 18 C 0.16 7.61 5.61 86.38 0.48 8.09 16 19 C 0.03 1.37 5.09 29.85 0.15 1.52 16 20 C -0.55 -31.87 9.11 25.60 0.23 -31.63 16 21 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 22 C 0.01 0.39 5.46 84.66 0.46 0.85 16 23 N -0.93 -55.43 13.29 21.45 0.28 -55.14 16 24 Si 0.97 44.96 29.54 68.60 2.03 46.99 16 25 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 26 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 27 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 28 C 0.50 15.55 7.64 87.86 0.67 16.22 16 29 O -0.56 -25.01 17.71 -3.08 -0.05 -25.06 16 30 H 0.11 1.09 8.14 -2.38 -0.02 1.07 16 31 H 0.08 0.60 7.65 -2.39 -0.02 0.58 16 32 H 0.06 0.69 7.68 -2.39 -0.02 0.67 16 33 H 0.15 1.63 6.30 -2.91 -0.02 1.61 16 34 H 0.16 1.01 8.06 -2.91 -0.02 0.99 16 35 H 0.15 1.39 8.06 -2.91 -0.02 1.36 16 36 H 0.13 2.38 8.06 -2.91 -0.02 2.36 16 37 H 0.10 0.86 8.14 -2.39 -0.02 0.85 16 38 H 0.10 0.73 8.14 -2.38 -0.02 0.71 16 39 H 0.11 0.84 7.81 -2.39 -0.02 0.82 16 40 H 0.14 0.60 8.14 -2.39 -0.02 0.58 16 41 H 0.42 8.37 8.42 -92.71 -0.78 7.59 16 42 H 0.41 13.30 8.49 -92.70 -0.79 12.52 16 43 H 0.03 1.76 8.14 -2.39 -0.02 1.74 16 44 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 45 H 0.01 0.74 8.14 -2.39 -0.02 0.72 16 46 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 47 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 Total: -1.00 -91.18 400.70 0.84 -90.34 By element: Atomic # 1 Polarization: 23.04 SS G_CDS: -0.56 Total: 22.49 kcal Atomic # 6 Polarization: 20.10 SS G_CDS: 6.87 Total: 26.97 kcal Atomic # 7 Polarization: -116.47 SS G_CDS: -6.43 Total: -122.89 kcal Atomic # 8 Polarization: -62.82 SS G_CDS: -1.07 Total: -63.89 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -91.18 0.84 -90.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273616475.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.577 kcal (2) G-P(sol) polarization free energy of solvation -91.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds