Wall clock time and date at job start Wed Apr 1 2020 04:37:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46498 * 120.00302 * 2 1 4 4 C 1.50705 * 109.47216 * 270.00232 * 3 2 1 5 5 O 1.21296 * 119.99807 * 359.97438 * 4 3 2 6 6 N 1.34777 * 120.00274 * 179.97438 * 4 3 2 7 7 C 1.40145 * 119.99898 * 185.27496 * 6 4 3 8 8 C 1.38852 * 119.99861 * 33.31466 * 7 6 4 9 9 C 1.38064 * 120.00527 * 179.97438 * 8 7 6 10 10 C 1.38894 * 119.99602 * 359.97438 * 9 8 7 11 11 N 1.39885 * 120.00364 * 179.97438 * 10 9 8 12 12 C 1.47016 * 111.00004 * 179.97438 * 11 10 9 13 13 C 1.53094 * 109.25645 * 177.60260 * 12 11 10 14 14 O 1.43013 * 109.26273 * 56.84964 * 13 12 11 15 15 C 1.43017 * 113.73772 * 301.33090 * 14 13 12 16 16 C 1.47011 * 111.00517 * 56.35877 * 11 10 9 17 17 C 1.38891 * 119.98811 * 0.25169 * 10 9 8 18 18 C 1.38065 * 119.99718 * 359.49424 * 17 10 9 19 19 C 1.34778 * 120.00126 * 180.02562 * 2 1 3 20 20 O 1.21687 * 120.00457 * 179.97438 * 19 2 1 21 21 C 1.46382 * 119.99549 * 359.97438 * 19 2 1 22 22 H 1.08001 * 119.99936 * 0.02562 * 21 19 2 23 23 C 1.40047 * 119.99662 * 180.02562 * 21 19 2 24 24 N 1.30675 * 120.00436 * 0.02562 * 23 21 19 25 25 Si 1.86803 * 119.99867 * 180.02562 * 23 21 19 26 26 H 1.48494 * 109.47349 * 90.00144 * 25 23 21 27 27 H 1.48498 * 109.47007 * 210.00327 * 25 23 21 28 28 H 1.48510 * 109.46974 * 329.99989 * 25 23 21 29 29 H 1.08997 * 109.47379 * 89.99816 * 1 2 3 30 30 H 1.08993 * 109.47150 * 210.00214 * 1 2 3 31 31 H 1.09010 * 109.46696 * 329.99846 * 1 2 3 32 32 H 1.08997 * 109.47630 * 150.00386 * 3 2 1 33 33 H 1.08996 * 109.47257 * 30.00036 * 3 2 1 34 34 H 0.97000 * 119.99775 * 5.27576 * 6 4 3 35 35 H 1.08001 * 119.99690 * 359.95489 * 8 7 6 36 36 H 1.07998 * 120.00408 * 180.02562 * 9 8 7 37 37 H 1.09002 * 109.50162 * 57.67206 * 12 11 10 38 38 H 1.08992 * 109.50366 * 297.53994 * 12 11 10 39 39 H 1.09005 * 109.50449 * 176.78335 * 13 12 11 40 40 H 1.09002 * 109.50812 * 296.86898 * 13 12 11 41 41 H 1.08997 * 109.50856 * 178.60129 * 15 14 13 42 42 H 1.08996 * 109.50441 * 298.73338 * 15 14 13 43 43 H 1.09004 * 109.50205 * 62.46137 * 16 11 10 44 44 H 1.08998 * 109.50870 * 302.33042 * 16 11 10 45 45 H 1.07999 * 119.99713 * 179.74811 * 17 10 9 46 46 H 1.07998 * 119.99766 * 180.27099 * 18 17 10 47 47 H 0.96992 * 120.00216 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 -1.4209 5 8 2.0549 1.0209 -2.3428 6 7 3.1108 2.8515 -1.6672 7 6 3.2482 3.3126 -2.9834 8 6 2.2388 3.0820 -3.9087 9 6 2.3738 3.5366 -5.2053 10 6 3.5190 4.2252 -5.5841 11 7 3.6561 4.6855 -6.8979 12 6 4.9366 5.3843 -7.0804 13 6 5.0714 5.8176 -8.5426 14 8 3.9530 6.6352 -8.8975 15 6 2.6896 5.9857 -8.7324 16 6 2.5309 5.5545 -7.2720 17 6 4.5305 4.4517 -4.6596 18 6 4.3929 4.0015 -3.3617 19 6 2.1389 -1.1672 -0.0005 20 8 3.3558 -1.1673 -0.0010 21 6 1.4069 -2.4349 -0.0005 22 1 0.3269 -2.4348 -0.0005 23 6 2.1071 -3.6477 -0.0005 24 7 3.4139 -3.6478 0.0000 25 14 1.1731 -5.2654 -0.0012 26 1 0.9261 -5.6939 -1.4014 27 1 1.9753 -6.3005 0.6989 28 1 -0.1248 -5.0880 0.6984 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3633 -0.8899 0.5138 31 1 -0.3633 0.8901 0.5139 32 1 3.1500 1.1384 0.5137 33 1 1.6085 2.0283 0.5138 34 1 3.4923 3.3584 -0.9334 35 1 1.3483 2.5466 -3.6141 36 1 1.5885 3.3576 -5.9249 37 1 5.7568 4.7145 -6.8222 38 1 4.9666 6.2630 -6.4362 39 1 5.9928 6.3859 -8.6703 40 1 5.0960 4.9357 -9.1828 41 1 1.8883 6.6755 -8.9974 42 1 2.6441 5.1087 -9.3781 43 1 2.5230 6.4359 -6.6307 44 1 1.5947 5.0091 -7.1535 45 1 5.4228 4.9836 -4.9551 46 1 5.1775 4.1814 -2.6418 47 1 3.8988 -4.4878 -0.0004 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274571499.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:35 Heat of formation + Delta-G solvation = -57.148389 kcal Electronic energy + Delta-G solvation = -29954.790129 eV Core-core repulsion = 25717.632115 eV Total energy + Delta-G solvation = -4237.158015 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.80194 -39.89024 -38.43325 -37.29842 -35.92325 -33.85172 -33.77218 -32.43732 -32.03916 -30.71974 -29.86383 -28.41368 -26.45774 -25.91019 -24.90599 -24.61522 -22.61777 -22.03235 -21.03628 -20.10666 -19.18860 -18.05586 -17.29622 -16.82803 -16.54216 -16.42822 -15.73143 -15.67877 -15.58844 -15.30886 -15.06646 -14.72329 -14.53547 -14.16628 -14.10508 -13.88997 -13.79016 -13.45619 -12.81993 -12.61954 -12.58782 -12.43128 -12.30546 -12.05794 -11.78733 -11.59838 -11.46432 -11.33029 -11.11482 -11.07108 -11.00652 -10.92659 -10.61017 -10.25957 -10.14574 -10.02648 -9.54613 -9.18897 -8.91124 -8.83348 -7.64442 -7.54785 -7.33061 -6.19257 -4.63526 1.27718 1.38822 2.99624 3.15310 3.21210 3.24495 3.27389 3.30582 3.47875 3.85480 4.09749 4.43100 4.51328 4.53977 4.56265 4.62553 4.72904 4.87905 4.88899 4.89345 5.11545 5.14829 5.21942 5.33339 5.34900 5.38222 5.45868 5.54144 5.55115 5.61381 5.80194 5.92684 5.95333 5.98789 5.99951 6.08580 6.40661 6.45701 6.53543 6.58718 6.67545 6.73378 6.84670 7.19603 7.44093 7.45808 7.66281 8.07293 8.29931 8.56864 9.02867 9.36240 10.56200 10.75186 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.019151 B = 0.002014 C = 0.001965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.716146 B =13898.519118 C =14243.862176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.630 5.630 3 C 0.112 3.888 4 C 0.492 3.508 5 O -0.499 6.499 6 N -0.684 5.684 7 C 0.142 3.858 8 C -0.098 4.098 9 C -0.115 4.115 10 C 0.080 3.920 11 N -0.485 5.485 12 C 0.013 3.987 13 C 0.062 3.938 14 O -0.386 6.386 15 C 0.062 3.938 16 C 0.020 3.980 17 C -0.148 4.148 18 C -0.127 4.127 19 C 0.561 3.439 20 O -0.576 6.576 21 C -0.538 4.538 22 H 0.073 0.927 23 C 0.086 3.914 24 N -0.766 5.766 25 Si 0.908 3.092 26 H -0.272 1.272 27 H -0.279 1.279 28 H -0.264 1.264 29 H 0.035 0.965 30 H 0.075 0.925 31 H 0.040 0.960 32 H 0.105 0.895 33 H 0.088 0.912 34 H 0.407 0.593 35 H 0.137 0.863 36 H 0.125 0.875 37 H 0.094 0.906 38 H 0.054 0.946 39 H 0.101 0.899 40 H 0.062 0.938 41 H 0.101 0.899 42 H 0.062 0.938 43 H 0.051 0.949 44 H 0.093 0.907 45 H 0.127 0.873 46 H 0.126 0.874 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.928 21.543 -10.604 24.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.367 5.367 3 C -0.017 4.017 4 C 0.279 3.721 5 O -0.370 6.370 6 N -0.332 5.332 7 C 0.046 3.954 8 C -0.119 4.119 9 C -0.135 4.135 10 C -0.017 4.017 11 N -0.202 5.202 12 C -0.114 4.114 13 C -0.015 4.015 14 O -0.304 6.304 15 C -0.015 4.015 16 C -0.106 4.106 17 C -0.169 4.169 18 C -0.148 4.148 19 C 0.368 3.632 20 O -0.459 6.459 21 C -0.574 4.574 22 H 0.091 0.909 23 C -0.134 4.134 24 N -0.395 5.395 25 Si 0.733 3.267 26 H -0.197 1.197 27 H -0.205 1.205 28 H -0.188 1.188 29 H 0.054 0.946 30 H 0.094 0.906 31 H 0.059 0.941 32 H 0.123 0.877 33 H 0.106 0.894 34 H 0.242 0.758 35 H 0.155 0.845 36 H 0.143 0.857 37 H 0.112 0.888 38 H 0.072 0.928 39 H 0.119 0.881 40 H 0.080 0.920 41 H 0.119 0.881 42 H 0.080 0.920 43 H 0.070 0.930 44 H 0.111 0.889 45 H 0.145 0.855 46 H 0.143 0.857 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.423 20.647 -11.638 23.705 hybrid contribution -0.199 -0.281 0.866 0.931 sum -0.622 20.366 -10.773 23.048 Atomic orbital electron populations 1.21448 0.81508 1.01052 1.00120 1.47766 1.05378 1.03963 1.79578 1.20881 1.00511 0.89250 0.91052 1.22335 0.76680 0.78908 0.94195 1.90703 1.48446 1.51704 1.46148 1.43866 1.57682 1.25195 1.06432 1.17794 0.93946 0.97832 0.85803 1.21062 0.98835 0.99321 0.92670 1.20617 0.97520 0.99370 0.96014 1.18810 0.95874 0.99653 0.87377 1.59439 1.03177 1.36741 1.20875 1.22962 0.92294 0.98053 0.98104 1.22716 0.89674 0.95481 0.93597 1.87991 1.14417 1.40702 1.87296 1.22721 0.86223 0.98051 0.94499 1.22939 0.94481 0.95820 0.97402 1.20985 0.99949 1.03423 0.92526 1.20738 0.95928 1.01712 0.96416 1.18262 0.86940 0.82091 0.75945 1.90589 1.14068 1.86022 1.55189 1.20960 0.93704 0.88995 1.53740 0.90864 1.25752 0.94646 1.00385 0.92591 1.70019 1.07096 1.27306 1.35097 0.86362 0.80119 0.81328 0.78908 1.19695 1.20456 1.18828 0.94608 0.90603 0.94131 0.87740 0.89418 0.75811 0.84511 0.85674 0.88808 0.92758 0.88075 0.92014 0.88063 0.91981 0.93025 0.88884 0.85546 0.85652 0.92101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.93 10.19 59.85 0.61 2.54 16 2 N -0.63 -14.42 2.36 -184.63 -0.44 -14.86 16 3 C 0.11 2.05 5.93 -5.19 -0.03 2.02 16 4 C 0.49 9.30 7.64 -10.98 -0.08 9.21 16 5 O -0.50 -11.71 14.12 5.54 0.08 -11.63 16 6 N -0.68 -9.86 5.35 -9.81 -0.05 -9.92 16 7 C 0.14 2.08 6.28 -83.60 -0.53 1.56 16 8 C -0.10 -1.50 8.65 -39.42 -0.34 -1.84 16 9 C -0.11 -1.52 9.20 -39.40 -0.36 -1.88 16 10 C 0.08 0.97 5.64 -83.70 -0.47 0.50 16 11 N -0.49 -5.05 4.78 -170.75 -0.82 -5.87 16 12 C 0.01 0.11 4.33 -3.71 -0.02 0.10 16 13 C 0.06 0.47 7.01 37.21 0.26 0.73 16 14 O -0.39 -3.56 10.83 -35.23 -0.38 -3.94 16 15 C 0.06 0.47 7.01 37.21 0.26 0.73 16 16 C 0.02 0.17 5.41 -3.71 -0.02 0.15 16 17 C -0.15 -1.71 8.81 -39.40 -0.35 -2.06 16 18 C -0.13 -1.57 9.96 -39.42 -0.39 -1.96 16 19 C 0.56 16.24 7.61 -12.98 -0.10 16.14 16 20 O -0.58 -18.78 14.60 5.20 0.08 -18.71 16 21 C -0.54 -15.41 8.74 -35.63 -0.31 -15.72 16 22 H 0.07 1.91 6.00 -52.49 -0.31 1.60 16 23 C 0.09 2.44 5.50 -17.37 -0.10 2.35 16 24 N -0.77 -23.36 11.83 55.55 0.66 -22.70 16 25 Si 0.91 20.47 29.56 -169.99 -5.02 15.45 16 26 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 27 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 28 H -0.26 -5.68 7.11 56.52 0.40 -5.28 16 29 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.08 1.45 6.09 -51.93 -0.32 1.13 16 31 H 0.04 0.59 7.89 -51.92 -0.41 0.18 16 32 H 0.10 1.99 7.42 -51.93 -0.39 1.61 16 33 H 0.09 1.18 7.89 -51.93 -0.41 0.77 16 34 H 0.41 4.25 8.82 -40.82 -0.36 3.89 16 35 H 0.14 2.32 6.41 -52.49 -0.34 1.98 16 36 H 0.13 1.47 7.19 -52.49 -0.38 1.09 16 37 H 0.09 0.75 7.21 -51.93 -0.37 0.37 16 38 H 0.05 0.45 7.55 -51.93 -0.39 0.06 16 39 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.09 0.74 6.86 -51.93 -0.36 0.38 16 45 H 0.13 1.17 5.81 -52.49 -0.30 0.86 16 46 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 47 H 0.27 7.41 8.29 -40.82 -0.34 7.08 16 LS Contribution 382.99 15.07 5.77 5.77 Total: -1.00 -39.45 382.99 -8.52 -47.98 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -6.43 Total: 5.86 kcal Atomic # 6 Polarization: 14.53 SS G_CDS: -1.97 Total: 12.57 kcal Atomic # 7 Polarization: -52.70 SS G_CDS: -0.65 Total: -53.35 kcal Atomic # 8 Polarization: -34.05 SS G_CDS: -0.23 Total: -34.28 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -39.45 -8.52 -47.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274571499.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.170 kcal (2) G-P(sol) polarization free energy of solvation -39.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds