Wall clock time and date at job start Wed Apr 1 2020 04:37:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46498 * 120.00302 * 2 1 4 4 C 1.50705 * 109.47216 * 270.00232 * 3 2 1 5 5 O 1.21296 * 119.99807 * 359.97438 * 4 3 2 6 6 N 1.34777 * 120.00274 * 179.97438 * 4 3 2 7 7 C 1.40145 * 119.99898 * 185.27496 * 6 4 3 8 8 C 1.38852 * 119.99861 * 33.31466 * 7 6 4 9 9 C 1.38064 * 120.00527 * 179.97438 * 8 7 6 10 10 C 1.38894 * 119.99602 * 359.97438 * 9 8 7 11 11 N 1.39885 * 120.00364 * 179.97438 * 10 9 8 12 12 C 1.47016 * 111.00004 * 179.97438 * 11 10 9 13 13 C 1.53094 * 109.25645 * 177.60260 * 12 11 10 14 14 O 1.43013 * 109.26273 * 56.84964 * 13 12 11 15 15 C 1.43017 * 113.73772 * 301.33090 * 14 13 12 16 16 C 1.47011 * 111.00517 * 56.35877 * 11 10 9 17 17 C 1.38891 * 119.98811 * 0.25169 * 10 9 8 18 18 C 1.38065 * 119.99718 * 359.49424 * 17 10 9 19 19 C 1.34778 * 120.00126 * 180.02562 * 2 1 3 20 20 O 1.21687 * 120.00457 * 179.97438 * 19 2 1 21 21 C 1.46382 * 119.99549 * 359.97438 * 19 2 1 22 22 H 1.08001 * 119.99936 * 0.02562 * 21 19 2 23 23 C 1.40047 * 119.99662 * 180.02562 * 21 19 2 24 24 N 1.30675 * 120.00436 * 0.02562 * 23 21 19 25 25 Si 1.86803 * 119.99867 * 180.02562 * 23 21 19 26 26 H 1.48494 * 109.47349 * 90.00144 * 25 23 21 27 27 H 1.48498 * 109.47007 * 210.00327 * 25 23 21 28 28 H 1.48510 * 109.46974 * 329.99989 * 25 23 21 29 29 H 1.08997 * 109.47379 * 89.99816 * 1 2 3 30 30 H 1.08993 * 109.47150 * 210.00214 * 1 2 3 31 31 H 1.09010 * 109.46696 * 329.99846 * 1 2 3 32 32 H 1.08997 * 109.47630 * 150.00386 * 3 2 1 33 33 H 1.08996 * 109.47257 * 30.00036 * 3 2 1 34 34 H 0.97000 * 119.99775 * 5.27576 * 6 4 3 35 35 H 1.08001 * 119.99690 * 359.95489 * 8 7 6 36 36 H 1.07998 * 120.00408 * 180.02562 * 9 8 7 37 37 H 1.09002 * 109.50162 * 57.67206 * 12 11 10 38 38 H 1.08992 * 109.50366 * 297.53994 * 12 11 10 39 39 H 1.09005 * 109.50449 * 176.78335 * 13 12 11 40 40 H 1.09002 * 109.50812 * 296.86898 * 13 12 11 41 41 H 1.08997 * 109.50856 * 178.60129 * 15 14 13 42 42 H 1.08996 * 109.50441 * 298.73338 * 15 14 13 43 43 H 1.09004 * 109.50205 * 62.46137 * 16 11 10 44 44 H 1.08998 * 109.50870 * 302.33042 * 16 11 10 45 45 H 1.07999 * 119.99713 * 179.74811 * 17 10 9 46 46 H 1.07998 * 119.99766 * 180.27099 * 18 17 10 47 47 H 0.96992 * 120.00216 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 -1.4209 5 8 2.0549 1.0209 -2.3428 6 7 3.1108 2.8515 -1.6672 7 6 3.2482 3.3126 -2.9834 8 6 2.2388 3.0820 -3.9087 9 6 2.3738 3.5366 -5.2053 10 6 3.5190 4.2252 -5.5841 11 7 3.6561 4.6855 -6.8979 12 6 4.9366 5.3843 -7.0804 13 6 5.0714 5.8176 -8.5426 14 8 3.9530 6.6352 -8.8975 15 6 2.6896 5.9857 -8.7324 16 6 2.5309 5.5545 -7.2720 17 6 4.5305 4.4517 -4.6596 18 6 4.3929 4.0015 -3.3617 19 6 2.1389 -1.1672 -0.0005 20 8 3.3558 -1.1673 -0.0010 21 6 1.4069 -2.4349 -0.0005 22 1 0.3269 -2.4348 -0.0005 23 6 2.1071 -3.6477 -0.0005 24 7 3.4139 -3.6478 0.0000 25 14 1.1731 -5.2654 -0.0012 26 1 0.9261 -5.6939 -1.4014 27 1 1.9753 -6.3005 0.6989 28 1 -0.1248 -5.0880 0.6984 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3633 -0.8899 0.5138 31 1 -0.3633 0.8901 0.5139 32 1 3.1500 1.1384 0.5137 33 1 1.6085 2.0283 0.5138 34 1 3.4923 3.3584 -0.9334 35 1 1.3483 2.5466 -3.6141 36 1 1.5885 3.3576 -5.9249 37 1 5.7568 4.7145 -6.8222 38 1 4.9666 6.2630 -6.4362 39 1 5.9928 6.3859 -8.6703 40 1 5.0960 4.9357 -9.1828 41 1 1.8883 6.6755 -8.9974 42 1 2.6441 5.1087 -9.3781 43 1 2.5230 6.4359 -6.6307 44 1 1.5947 5.0091 -7.1535 45 1 5.4228 4.9836 -4.9551 46 1 5.1775 4.1814 -2.6418 47 1 3.8988 -4.4878 -0.0004 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274571499.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:34 Heat of formation + Delta-G solvation = -87.437951 kcal Electronic energy + Delta-G solvation = -29956.103583 eV Core-core repulsion = 25717.632115 eV Total energy + Delta-G solvation = -4238.471469 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.79496 -41.04992 -39.68827 -38.94052 -36.97647 -35.68904 -35.02235 -34.60819 -32.78783 -31.60989 -31.08941 -29.72563 -28.06164 -27.27503 -26.25047 -25.64727 -23.66388 -23.02354 -22.18061 -21.24935 -20.86588 -19.07857 -18.52067 -18.32566 -18.07653 -17.69997 -17.18470 -16.63517 -16.45754 -16.32724 -16.19581 -15.92528 -15.82054 -15.65354 -15.49149 -15.03943 -14.94741 -14.50185 -14.26862 -14.19470 -13.81199 -13.51834 -13.45688 -13.20406 -13.14263 -13.10096 -12.82316 -12.78468 -12.72347 -12.41749 -12.17529 -12.01637 -11.97400 -11.74192 -11.59852 -11.09993 -10.92829 -10.76441 -10.12383 -9.95762 -9.85434 -9.18305 -8.55985 -8.30584 -6.85007 0.22080 0.36535 1.37785 1.39633 1.54712 1.60185 1.98061 2.24105 2.48697 2.49835 2.80948 2.87404 2.91009 3.57923 3.72753 3.80604 3.87347 3.94894 3.95007 4.09594 4.17583 4.24173 4.24550 4.33033 4.45532 4.47525 4.50527 4.54406 4.56738 4.66007 4.74253 4.75773 4.88203 4.90772 4.98101 5.03013 5.04463 5.17109 5.34849 5.35923 5.47848 5.69601 5.74388 5.90937 6.07895 6.10673 6.21210 6.25296 6.52269 6.86565 7.20882 7.34395 8.44167 8.65721 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.019151 B = 0.002014 C = 0.001965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.716146 B =13898.519118 C =14243.862176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.635 5.635 3 C 0.109 3.891 4 C 0.492 3.508 5 O -0.555 6.555 6 N -0.663 5.663 7 C 0.111 3.889 8 C -0.116 4.116 9 C -0.125 4.125 10 C 0.086 3.914 11 N -0.496 5.496 12 C 0.011 3.989 13 C 0.062 3.938 14 O -0.401 6.401 15 C 0.063 3.937 16 C 0.020 3.980 17 C -0.148 4.148 18 C -0.119 4.119 19 C 0.544 3.456 20 O -0.628 6.628 21 C -0.568 4.568 22 H 0.092 0.908 23 C 0.026 3.974 24 N -0.822 5.822 25 Si 0.995 3.005 26 H -0.268 1.268 27 H -0.270 1.270 28 H -0.243 1.243 29 H 0.027 0.973 30 H 0.069 0.931 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.146 0.854 34 H 0.426 0.574 35 H 0.112 0.888 36 H 0.133 0.867 37 H 0.100 0.900 38 H 0.060 0.940 39 H 0.123 0.877 40 H 0.060 0.940 41 H 0.121 0.879 42 H 0.062 0.938 43 H 0.050 0.950 44 H 0.096 0.904 45 H 0.155 0.845 46 H 0.151 0.849 47 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.474 23.066 -10.910 25.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.370 5.370 3 C -0.019 4.019 4 C 0.279 3.721 5 O -0.431 6.431 6 N -0.311 5.311 7 C 0.017 3.983 8 C -0.137 4.137 9 C -0.146 4.146 10 C -0.012 4.012 11 N -0.213 5.213 12 C -0.116 4.116 13 C -0.015 4.015 14 O -0.319 6.319 15 C -0.014 4.014 16 C -0.106 4.106 17 C -0.169 4.169 18 C -0.140 4.140 19 C 0.350 3.650 20 O -0.515 6.515 21 C -0.604 4.604 22 H 0.110 0.890 23 C -0.189 4.189 24 N -0.451 5.451 25 Si 0.815 3.185 26 H -0.193 1.193 27 H -0.195 1.195 28 H -0.166 1.166 29 H 0.046 0.954 30 H 0.088 0.912 31 H 0.108 0.892 32 H 0.112 0.888 33 H 0.163 0.837 34 H 0.265 0.735 35 H 0.130 0.870 36 H 0.150 0.850 37 H 0.118 0.882 38 H 0.078 0.922 39 H 0.141 0.859 40 H 0.078 0.922 41 H 0.139 0.861 42 H 0.080 0.920 43 H 0.068 0.932 44 H 0.114 0.886 45 H 0.172 0.828 46 H 0.169 0.831 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.991 22.281 -11.936 25.296 hybrid contribution -0.004 -0.559 0.853 1.020 sum -0.996 21.722 -11.082 24.406 Atomic orbital electron populations 1.21599 0.79067 1.03220 1.00245 1.47540 1.07092 1.04142 1.78217 1.21187 1.00712 0.88683 0.91322 1.22329 0.76543 0.79498 0.93704 1.90684 1.51196 1.53764 1.47494 1.43520 1.56275 1.23911 1.07428 1.17995 0.95092 0.99601 0.85658 1.20982 0.98656 1.00115 0.93952 1.20700 0.98590 0.99860 0.95468 1.18990 0.95296 0.98606 0.88318 1.59425 1.04664 1.37710 1.19499 1.23067 0.91393 0.98159 0.98951 1.22838 0.90147 0.95700 0.92797 1.87976 1.15132 1.41469 1.87366 1.22822 0.86400 0.98561 0.93597 1.22988 0.94040 0.95410 0.98114 1.21337 1.00665 1.02967 0.91979 1.21023 0.95401 1.00198 0.97372 1.18596 0.86600 0.84184 0.75580 1.90529 1.16148 1.87447 1.57416 1.21530 0.94885 0.89910 1.54068 0.89027 1.27025 0.95567 1.05053 0.91253 1.70191 1.09526 1.28838 1.36573 0.85057 0.79097 0.75180 0.79213 1.19255 1.19491 1.16634 0.95437 0.91200 0.89162 0.88791 0.83697 0.73504 0.87043 0.84962 0.88205 0.92194 0.85909 0.92209 0.86087 0.92003 0.93152 0.88595 0.82763 0.83116 0.91678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.72 10.19 127.77 1.30 5.02 16 2 N -0.63 -29.30 2.36 -856.27 -2.02 -31.33 16 3 C 0.11 3.93 5.93 85.64 0.51 4.44 16 4 C 0.49 18.87 7.64 87.66 0.67 19.53 16 5 O -0.56 -27.24 14.12 -3.08 -0.04 -27.28 16 6 N -0.66 -18.90 5.35 -303.34 -1.62 -20.53 16 7 C 0.11 3.26 6.28 38.11 0.24 3.50 16 8 C -0.12 -3.69 8.65 22.38 0.19 -3.49 16 9 C -0.13 -3.37 9.20 22.39 0.21 -3.17 16 10 C 0.09 1.99 5.64 38.17 0.22 2.21 16 11 N -0.50 -9.59 4.78 -694.14 -3.32 -12.90 16 12 C 0.01 0.16 4.33 86.31 0.37 0.54 16 13 C 0.06 0.80 7.01 72.01 0.50 1.31 16 14 O -0.40 -6.59 10.83 -148.98 -1.61 -8.20 16 15 C 0.06 0.85 7.01 72.02 0.50 1.35 16 16 C 0.02 0.32 5.41 86.32 0.47 0.79 16 17 C -0.15 -3.14 8.81 22.39 0.20 -2.94 16 18 C -0.12 -2.76 9.96 22.38 0.22 -2.54 16 19 C 0.54 32.53 7.61 86.36 0.66 33.18 16 20 O -0.63 -42.87 14.60 -4.31 -0.06 -42.93 16 21 C -0.57 -33.24 8.74 24.83 0.22 -33.02 16 22 H 0.09 4.81 6.00 -2.91 -0.02 4.80 16 23 C 0.03 1.49 5.50 85.30 0.47 1.96 16 24 N -0.82 -51.86 11.83 21.84 0.26 -51.60 16 25 Si 1.00 42.35 29.56 68.60 2.03 44.38 16 26 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 27 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 28 H -0.24 -9.44 7.11 99.48 0.71 -8.73 16 29 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.07 2.62 6.09 -2.39 -0.01 2.60 16 31 H 0.09 2.39 7.89 -2.38 -0.02 2.37 16 32 H 0.09 3.63 7.42 -2.39 -0.02 3.61 16 33 H 0.15 3.47 7.89 -2.39 -0.02 3.45 16 34 H 0.43 8.33 8.82 -92.71 -0.82 7.51 16 35 H 0.11 4.06 6.41 -2.91 -0.02 4.04 16 36 H 0.13 3.20 7.19 -2.91 -0.02 3.17 16 37 H 0.10 1.34 7.21 -2.39 -0.02 1.32 16 38 H 0.06 0.83 7.55 -2.39 -0.02 0.81 16 39 H 0.12 1.04 8.14 -2.38 -0.02 1.02 16 40 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 44 H 0.10 1.44 6.86 -2.39 -0.02 1.42 16 45 H 0.15 2.36 5.81 -2.91 -0.02 2.34 16 46 H 0.15 2.65 8.06 -2.91 -0.02 2.62 16 47 H 0.27 15.64 8.29 -92.71 -0.77 14.87 16 Total: -1.00 -91.40 382.99 0.75 -90.65 By element: Atomic # 1 Polarization: 30.87 SS G_CDS: 0.20 Total: 31.07 kcal Atomic # 6 Polarization: 21.72 SS G_CDS: 6.95 Total: 28.67 kcal Atomic # 7 Polarization: -109.65 SS G_CDS: -6.70 Total: -116.36 kcal Atomic # 8 Polarization: -76.70 SS G_CDS: -1.72 Total: -78.42 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.38 kcal Total: -91.40 0.75 -90.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274571499.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.213 kcal (2) G-P(sol) polarization free energy of solvation -91.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds