Wall clock time and date at job start Wed Apr 1 2020 05:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50703 * 119.99970 * 2 1 4 4 N 1.46499 * 109.47126 * 125.00049 * 3 2 1 5 5 C 1.46506 * 119.99936 * 89.99796 * 4 3 2 6 6 C 1.50703 * 109.46877 * 90.00092 * 5 4 3 7 7 C 1.38266 * 119.94502 * 269.72479 * 6 5 4 8 8 C 1.38142 * 120.05375 * 179.72646 * 7 6 5 9 9 C 1.38731 * 119.94496 * 0.57041 * 8 7 6 10 10 O 1.35897 * 120.05565 * 179.68622 * 9 8 7 11 11 C 1.42898 * 117.00304 * 0.02562 * 10 9 8 12 12 C 1.38732 * 119.88726 * 359.70184 * 9 8 7 13 13 C 1.38145 * 119.94506 * 0.02562 * 12 9 8 14 14 C 1.34773 * 120.00036 * 270.27831 * 4 3 2 15 15 O 1.21586 * 120.00012 * 179.72577 * 14 4 3 16 16 N 1.34774 * 119.99940 * 359.72217 * 14 4 3 17 17 C 1.46498 * 120.00211 * 180.02562 * 16 14 4 18 18 C 1.50698 * 109.47426 * 179.97438 * 17 16 14 19 19 O 1.21297 * 119.99724 * 0.02562 * 18 17 16 20 20 N 1.34778 * 120.00117 * 179.97438 * 18 17 16 21 21 C 1.37102 * 120.00012 * 180.02562 * 20 18 17 22 22 H 1.08005 * 119.99836 * 359.97438 * 21 20 18 23 23 C 1.38945 * 120.00285 * 180.02562 * 21 20 18 24 24 N 1.31415 * 119.99508 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00197 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.46927 * 89.99940 * 25 23 21 27 27 H 1.48498 * 109.46827 * 210.00165 * 25 23 21 28 28 H 1.48498 * 109.47123 * 329.99866 * 25 23 21 29 29 H 1.07995 * 119.99952 * 0.02562 * 1 2 3 30 30 H 1.07998 * 120.00048 * 179.97438 * 1 2 3 31 31 H 1.08004 * 120.00152 * 180.02562 * 2 1 3 32 32 H 1.08994 * 109.47398 * 4.99816 * 3 2 1 33 33 H 1.09005 * 109.46700 * 244.99738 * 3 2 1 34 34 H 1.09000 * 109.46803 * 209.99571 * 5 4 3 35 35 H 1.09000 * 109.47214 * 330.00364 * 5 4 3 36 36 H 1.08002 * 119.97003 * 359.97438 * 7 6 5 37 37 H 1.07994 * 120.02666 * 180.25449 * 8 7 6 38 38 H 1.08995 * 109.47208 * 180.02562 * 11 10 9 39 39 H 1.08994 * 109.47146 * 300.00540 * 11 10 9 40 40 H 1.09004 * 109.46734 * 60.00451 * 11 10 9 41 41 H 1.08001 * 120.02901 * 179.97438 * 12 9 8 42 42 H 1.08006 * 119.96789 * 179.97438 * 13 12 9 43 43 H 0.97004 * 120.00041 * 359.97438 * 16 14 4 44 44 H 1.08998 * 109.47182 * 299.99924 * 17 16 14 45 45 H 1.09001 * 109.47115 * 59.99869 * 17 16 14 46 46 H 0.96995 * 120.00110 * 359.97438 * 20 18 17 47 47 H 0.97007 * 119.99673 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1314 5 6 4.3589 0.8256 0.9694 6 6 5.2616 1.9480 0.5259 7 6 5.4455 2.1941 -0.8222 8 6 6.2679 3.2259 -1.2312 9 6 6.9189 4.0080 -0.2882 10 8 7.7335 5.0195 -0.6882 11 6 7.8734 5.2220 -2.0958 12 6 6.7371 3.7554 1.0637 13 6 5.9091 2.7260 1.4677 14 6 2.5919 1.8171 2.3228 15 8 3.3625 1.8347 3.2632 16 7 1.3360 2.2828 2.4719 17 6 0.8994 2.8107 3.7668 18 6 -0.5345 3.2637 3.6670 19 8 -1.1330 3.1556 2.6175 20 7 -1.1522 3.7878 4.7442 21 6 -2.4568 4.1994 4.6535 22 1 -2.9894 4.1039 3.7188 23 6 -3.0935 4.7402 5.7638 24 7 -2.4452 4.8568 6.9010 25 14 -4.8708 5.3016 5.6401 26 1 -5.7717 4.1721 5.9835 27 1 -5.1022 6.4241 6.5844 28 1 -5.1514 5.7549 4.2541 29 1 -0.5400 0.9353 -0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3586 2.1317 0.0895 33 1 2.6213 1.4025 -0.9314 34 1 4.7141 0.4279 1.9200 35 1 4.3666 0.0351 0.2190 36 1 4.9426 1.5816 -1.5560 37 1 6.4081 3.4203 -2.2843 38 1 8.5494 6.0575 -2.2773 39 1 8.2795 4.3202 -2.5540 40 1 6.8980 5.4424 -2.5298 41 1 7.2430 4.3626 1.7998 42 1 5.7677 2.5288 2.5201 43 1 0.7214 2.2691 1.7215 44 1 0.9826 2.0310 4.5238 45 1 1.5285 3.6562 4.0453 46 1 -0.6739 3.8732 5.5837 47 1 -2.8897 5.2341 7.6762 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358317339.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:38 Heat of formation + Delta-G solvation = -47.305819 kcal Electronic energy + Delta-G solvation = -29861.531998 eV Core-core repulsion = 25624.800789 eV Total energy + Delta-G solvation = -4236.731209 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.53330 -39.94934 -38.33116 -37.69074 -36.12834 -34.50137 -33.76146 -33.15421 -31.38747 -31.28377 -30.83004 -28.15558 -27.46202 -26.56071 -25.24642 -24.08284 -22.80076 -21.49048 -20.45983 -19.59369 -19.35505 -18.42280 -18.26936 -17.82089 -16.46898 -16.32794 -16.07224 -15.96435 -15.59744 -15.20100 -14.87468 -14.66863 -14.50689 -14.34323 -14.07359 -13.95941 -13.73215 -13.63666 -13.41266 -13.37914 -12.81702 -12.36058 -12.27139 -12.13227 -12.02271 -11.75368 -11.66841 -11.61594 -11.34030 -11.26496 -11.11438 -10.93411 -10.45177 -10.30640 -10.03689 -9.61915 -9.49535 -9.12349 -8.90121 -8.60182 -8.49866 -8.27413 -8.08050 -6.49726 -3.91628 1.18555 1.22377 2.11767 2.89830 3.03587 3.12561 3.22791 3.28119 3.41173 3.67241 3.77423 4.07636 4.24423 4.53778 4.69725 4.72456 4.78494 4.81208 4.82898 4.91287 4.97329 5.05251 5.13810 5.19115 5.21133 5.23298 5.41512 5.54076 5.61410 5.65323 5.88122 5.89834 5.94973 6.04333 6.10414 6.10905 6.17304 6.42430 6.52887 6.56160 6.61070 6.63940 6.81279 7.08051 7.17961 7.47467 7.94242 8.19988 8.47206 8.82633 9.06364 9.41643 9.89500 10.67217 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.012627 B = 0.002263 C = 0.002088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2216.966722 B =12369.742874 C =13405.223276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.188 4.188 3 C 0.137 3.863 4 N -0.622 5.622 5 C 0.178 3.822 6 C -0.142 4.142 7 C -0.068 4.068 8 C -0.214 4.214 9 C 0.126 3.874 10 O -0.319 6.319 11 C 0.028 3.972 12 C -0.154 4.154 13 C -0.051 4.051 14 C 0.709 3.291 15 O -0.594 6.594 16 N -0.723 5.723 17 C 0.127 3.873 18 C 0.430 3.570 19 O -0.598 6.598 20 N -0.550 5.550 21 C -0.304 4.304 22 H 0.105 0.895 23 C 0.025 3.975 24 N -0.895 5.895 25 Si 0.933 3.067 26 H -0.277 1.277 27 H -0.283 1.283 28 H -0.269 1.269 29 H 0.105 0.895 30 H 0.099 0.901 31 H 0.109 0.891 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.093 0.907 35 H 0.082 0.918 36 H 0.122 0.878 37 H 0.125 0.875 38 H 0.098 0.902 39 H 0.054 0.946 40 H 0.055 0.945 41 H 0.129 0.871 42 H 0.138 0.862 43 H 0.406 0.594 44 H 0.081 0.919 45 H 0.081 0.919 46 H 0.396 0.604 47 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.661 -6.271 -16.864 25.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.208 4.208 3 C 0.014 3.986 4 N -0.358 5.358 5 C 0.055 3.945 6 C -0.143 4.143 7 C -0.087 4.087 8 C -0.232 4.232 9 C 0.081 3.919 10 O -0.233 6.233 11 C -0.067 4.067 12 C -0.173 4.173 13 C -0.070 4.070 14 C 0.411 3.589 15 O -0.473 6.473 16 N -0.381 5.381 17 C -0.002 4.002 18 C 0.215 3.785 19 O -0.485 6.485 20 N -0.184 5.184 21 C -0.433 4.433 22 H 0.123 0.877 23 C -0.178 4.178 24 N -0.535 5.535 25 Si 0.759 3.241 26 H -0.203 1.203 27 H -0.208 1.208 28 H -0.194 1.194 29 H 0.123 0.877 30 H 0.117 0.883 31 H 0.127 0.873 32 H 0.099 0.901 33 H 0.104 0.896 34 H 0.111 0.889 35 H 0.100 0.900 36 H 0.140 0.860 37 H 0.143 0.857 38 H 0.117 0.883 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.147 0.853 42 H 0.156 0.844 43 H 0.245 0.755 44 H 0.100 0.900 45 H 0.099 0.901 46 H 0.230 0.770 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 17.838 -6.083 -16.532 25.071 hybrid contribution -1.029 0.333 -0.150 1.091 sum 16.810 -5.750 -16.682 24.371 Atomic orbital electron populations 1.24017 0.95820 1.02720 0.97612 1.23259 0.96251 0.98697 1.02544 1.20622 0.92357 0.95723 0.89886 1.47107 1.12113 1.66846 1.09775 1.20111 0.79224 0.92540 1.02628 1.20220 1.00459 1.00446 0.93224 1.20809 0.96412 0.96212 0.95221 1.21153 1.03354 0.99775 0.98961 1.19082 0.91038 0.88075 0.93695 1.86072 1.62791 1.49107 1.25320 1.23036 1.02036 1.02085 0.79550 1.20491 1.03077 1.00811 0.92909 1.21102 0.92891 0.92500 1.00464 1.15781 0.82288 0.78171 0.82694 1.90867 1.54144 1.63094 1.39175 1.44931 1.12342 1.66115 1.14752 1.20787 0.94748 0.99533 0.85090 1.19765 0.87997 0.85157 0.85537 1.90476 1.67025 1.61627 1.29368 1.41787 1.12676 1.52950 1.11025 1.19714 0.87329 1.37589 0.98690 0.87717 1.25323 1.00527 0.97169 0.94758 1.69621 1.37853 1.44655 1.01355 0.85819 0.81600 0.78270 0.78369 1.20289 1.20815 1.19352 0.87708 0.88257 0.87255 0.90054 0.89625 0.88862 0.89989 0.85984 0.85684 0.88334 0.92737 0.92652 0.85259 0.84385 0.75496 0.90047 0.90087 0.77024 0.91617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.80 14.32 29.02 0.42 -1.38 16 2 C -0.19 -1.92 9.84 -36.02 -0.35 -2.28 16 3 C 0.14 1.45 5.61 -5.19 -0.03 1.43 16 4 N -0.62 -7.90 2.44 -182.18 -0.44 -8.34 16 5 C 0.18 1.89 5.54 -5.19 -0.03 1.86 16 6 C -0.14 -1.57 5.46 -104.60 -0.57 -2.14 16 7 C -0.07 -0.64 9.69 -39.61 -0.38 -1.03 16 8 C -0.21 -2.07 9.04 -39.43 -0.36 -2.43 16 9 C 0.13 1.43 6.69 -39.22 -0.26 1.17 16 10 O -0.32 -3.41 10.50 -19.42 -0.20 -3.61 16 11 C 0.03 0.18 9.81 101.05 0.99 1.17 16 12 C -0.15 -1.84 9.99 -39.43 -0.39 -2.24 16 13 C -0.05 -0.63 9.69 -39.61 -0.38 -1.01 16 14 C 0.71 11.80 8.28 -86.92 -0.72 11.08 16 15 O -0.59 -11.29 15.46 5.29 0.08 -11.21 16 16 N -0.72 -12.67 5.40 -66.42 -0.36 -13.03 16 17 C 0.13 2.42 6.15 -5.20 -0.03 2.39 16 18 C 0.43 9.94 7.85 -10.99 -0.09 9.85 16 19 O -0.60 -15.23 15.24 5.54 0.08 -15.14 16 20 N -0.55 -13.71 5.29 -10.96 -0.06 -13.77 16 21 C -0.30 -8.26 9.68 -14.93 -0.14 -8.41 16 22 H 0.11 2.96 7.16 -52.48 -0.38 2.58 16 23 C 0.02 0.66 5.50 -17.47 -0.10 0.56 16 24 N -0.89 -24.00 13.05 55.50 0.72 -23.27 16 25 Si 0.93 20.59 29.55 -169.99 -5.02 15.57 16 26 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 27 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 28 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 29 H 0.10 1.27 7.84 -52.49 -0.41 0.86 16 30 H 0.10 0.98 8.06 -52.49 -0.42 0.56 16 31 H 0.11 1.00 8.06 -52.48 -0.42 0.57 16 32 H 0.08 0.96 6.02 -51.93 -0.31 0.65 16 33 H 0.09 0.71 8.07 -51.93 -0.42 0.29 16 34 H 0.09 1.09 7.35 -51.93 -0.38 0.71 16 35 H 0.08 0.64 8.01 -51.93 -0.42 0.22 16 36 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 37 H 0.13 0.92 6.30 -52.49 -0.33 0.59 16 38 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.05 0.28 7.66 -51.93 -0.40 -0.11 16 40 H 0.05 0.32 7.66 -51.93 -0.40 -0.08 16 41 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 42 H 0.14 1.82 7.60 -52.48 -0.40 1.42 16 43 H 0.41 7.03 5.17 -40.82 -0.21 6.82 16 44 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 45 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 46 H 0.40 9.54 7.90 -40.82 -0.32 9.22 16 47 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 403.10 15.07 6.07 6.07 Total: -1.00 -32.48 403.10 -8.03 -40.50 By element: Atomic # 1 Polarization: 24.11 SS G_CDS: -6.47 Total: 17.64 kcal Atomic # 6 Polarization: 11.03 SS G_CDS: -2.44 Total: 8.59 kcal Atomic # 7 Polarization: -58.28 SS G_CDS: -0.14 Total: -58.41 kcal Atomic # 8 Polarization: -29.92 SS G_CDS: -0.04 Total: -29.96 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -32.48 -8.03 -40.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358317339.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.802 kcal (2) G-P(sol) polarization free energy of solvation -32.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds