Wall clock time and date at job start Wed Apr 1 2020 05:04:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50703 * 119.99970 * 2 1 4 4 N 1.46499 * 109.47126 * 125.00049 * 3 2 1 5 5 C 1.46506 * 119.99936 * 89.99796 * 4 3 2 6 6 C 1.50703 * 109.46877 * 90.00092 * 5 4 3 7 7 C 1.38266 * 119.94502 * 269.72479 * 6 5 4 8 8 C 1.38142 * 120.05375 * 179.72646 * 7 6 5 9 9 C 1.38731 * 119.94496 * 0.57041 * 8 7 6 10 10 O 1.35897 * 120.05565 * 179.68622 * 9 8 7 11 11 C 1.42898 * 117.00304 * 0.02562 * 10 9 8 12 12 C 1.38732 * 119.88726 * 359.70184 * 9 8 7 13 13 C 1.38145 * 119.94506 * 0.02562 * 12 9 8 14 14 C 1.34773 * 120.00036 * 270.27831 * 4 3 2 15 15 O 1.21586 * 120.00012 * 179.72577 * 14 4 3 16 16 N 1.34774 * 119.99940 * 359.72217 * 14 4 3 17 17 C 1.46498 * 120.00211 * 180.02562 * 16 14 4 18 18 C 1.50698 * 109.47426 * 179.97438 * 17 16 14 19 19 O 1.21297 * 119.99724 * 0.02562 * 18 17 16 20 20 N 1.34778 * 120.00117 * 179.97438 * 18 17 16 21 21 C 1.37102 * 120.00012 * 180.02562 * 20 18 17 22 22 H 1.08005 * 119.99836 * 359.97438 * 21 20 18 23 23 C 1.38945 * 120.00285 * 180.02562 * 21 20 18 24 24 N 1.31415 * 119.99508 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00197 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.46927 * 89.99940 * 25 23 21 27 27 H 1.48498 * 109.46827 * 210.00165 * 25 23 21 28 28 H 1.48498 * 109.47123 * 329.99866 * 25 23 21 29 29 H 1.07995 * 119.99952 * 0.02562 * 1 2 3 30 30 H 1.07998 * 120.00048 * 179.97438 * 1 2 3 31 31 H 1.08004 * 120.00152 * 180.02562 * 2 1 3 32 32 H 1.08994 * 109.47398 * 4.99816 * 3 2 1 33 33 H 1.09005 * 109.46700 * 244.99738 * 3 2 1 34 34 H 1.09000 * 109.46803 * 209.99571 * 5 4 3 35 35 H 1.09000 * 109.47214 * 330.00364 * 5 4 3 36 36 H 1.08002 * 119.97003 * 359.97438 * 7 6 5 37 37 H 1.07994 * 120.02666 * 180.25449 * 8 7 6 38 38 H 1.08995 * 109.47208 * 180.02562 * 11 10 9 39 39 H 1.08994 * 109.47146 * 300.00540 * 11 10 9 40 40 H 1.09004 * 109.46734 * 60.00451 * 11 10 9 41 41 H 1.08001 * 120.02901 * 179.97438 * 12 9 8 42 42 H 1.08006 * 119.96789 * 179.97438 * 13 12 9 43 43 H 0.97004 * 120.00041 * 359.97438 * 16 14 4 44 44 H 1.08998 * 109.47182 * 299.99924 * 17 16 14 45 45 H 1.09001 * 109.47115 * 59.99869 * 17 16 14 46 46 H 0.96995 * 120.00110 * 359.97438 * 20 18 17 47 47 H 0.97007 * 119.99673 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1314 5 6 4.3589 0.8256 0.9694 6 6 5.2616 1.9480 0.5259 7 6 5.4455 2.1941 -0.8222 8 6 6.2679 3.2259 -1.2312 9 6 6.9189 4.0080 -0.2882 10 8 7.7335 5.0195 -0.6882 11 6 7.8734 5.2220 -2.0958 12 6 6.7371 3.7554 1.0637 13 6 5.9091 2.7260 1.4677 14 6 2.5919 1.8171 2.3228 15 8 3.3625 1.8347 3.2632 16 7 1.3360 2.2828 2.4719 17 6 0.8994 2.8107 3.7668 18 6 -0.5345 3.2637 3.6670 19 8 -1.1330 3.1556 2.6175 20 7 -1.1522 3.7878 4.7442 21 6 -2.4568 4.1994 4.6535 22 1 -2.9894 4.1039 3.7188 23 6 -3.0935 4.7402 5.7638 24 7 -2.4452 4.8568 6.9010 25 14 -4.8708 5.3016 5.6401 26 1 -5.7717 4.1721 5.9835 27 1 -5.1022 6.4241 6.5844 28 1 -5.1514 5.7549 4.2541 29 1 -0.5400 0.9353 -0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3586 2.1317 0.0895 33 1 2.6213 1.4025 -0.9314 34 1 4.7141 0.4279 1.9200 35 1 4.3666 0.0351 0.2190 36 1 4.9426 1.5816 -1.5560 37 1 6.4081 3.4203 -2.2843 38 1 8.5494 6.0575 -2.2773 39 1 8.2795 4.3202 -2.5540 40 1 6.8980 5.4424 -2.5298 41 1 7.2430 4.3626 1.7998 42 1 5.7677 2.5288 2.5201 43 1 0.7214 2.2691 1.7215 44 1 0.9826 2.0310 4.5238 45 1 1.5285 3.6562 4.0453 46 1 -0.6739 3.8732 5.5837 47 1 -2.8897 5.2341 7.6762 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358317339.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:37 Heat of formation + Delta-G solvation = -68.083276 kcal Electronic energy + Delta-G solvation = -29862.432976 eV Core-core repulsion = 25624.800789 eV Total energy + Delta-G solvation = -4237.632187 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.58203 -40.93860 -40.08137 -38.60597 -37.17300 -36.25721 -35.34012 -34.15111 -33.36668 -32.11280 -31.72753 -29.37072 -28.42819 -27.39908 -26.72762 -25.51447 -23.59858 -22.37575 -21.52078 -21.35423 -20.41637 -20.10716 -19.33207 -19.04330 -17.63444 -17.42368 -17.16932 -17.02926 -16.63688 -16.54032 -16.36021 -16.00588 -15.80763 -15.61435 -15.22270 -15.09238 -14.95285 -14.65315 -14.48018 -14.37338 -13.95802 -13.60081 -13.54403 -13.52156 -13.05394 -12.93369 -12.87646 -12.71227 -12.50228 -12.44946 -12.18653 -12.12622 -11.95989 -11.69000 -11.56382 -11.33335 -10.54563 -10.38382 -10.23525 -10.08740 -9.94041 -9.60731 -9.09984 -8.50384 -6.00508 0.34658 0.41321 1.24579 1.36560 1.42622 1.55274 1.76612 1.90035 2.13802 2.28676 2.38304 2.76211 3.01672 3.16784 3.20487 3.83046 3.88757 3.96058 4.00731 4.12044 4.17493 4.23082 4.36990 4.39889 4.40581 4.44265 4.45787 4.46250 4.59714 4.70783 4.73743 4.78688 4.85313 5.06084 5.10079 5.29618 5.33902 5.38256 5.39629 5.46521 5.66166 5.71193 5.76472 5.84645 5.92699 5.96897 6.45597 6.48442 6.91955 7.03833 7.42812 7.54237 7.94641 8.66614 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.012627 B = 0.002263 C = 0.002088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2216.966722 B =12369.742874 C =13405.223276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.177 4.177 3 C 0.133 3.867 4 N -0.612 5.612 5 C 0.177 3.823 6 C -0.150 4.150 7 C -0.060 4.060 8 C -0.212 4.212 9 C 0.116 3.884 10 O -0.341 6.341 11 C 0.019 3.981 12 C -0.176 4.176 13 C -0.068 4.068 14 C 0.704 3.296 15 O -0.622 6.622 16 N -0.726 5.726 17 C 0.140 3.860 18 C 0.435 3.565 19 O -0.621 6.621 20 N -0.560 5.560 21 C -0.335 4.335 22 H 0.087 0.913 23 C -0.012 4.012 24 N -0.917 5.917 25 Si 0.997 3.003 26 H -0.270 1.270 27 H -0.272 1.272 28 H -0.269 1.269 29 H 0.086 0.914 30 H 0.109 0.891 31 H 0.129 0.871 32 H 0.066 0.934 33 H 0.121 0.879 34 H 0.077 0.923 35 H 0.122 0.878 36 H 0.157 0.843 37 H 0.153 0.847 38 H 0.116 0.884 39 H 0.069 0.931 40 H 0.063 0.937 41 H 0.124 0.876 42 H 0.118 0.882 43 H 0.407 0.593 44 H 0.090 0.910 45 H 0.088 0.912 46 H 0.398 0.602 47 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.897 -7.014 -19.194 27.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.197 4.197 3 C 0.011 3.989 4 N -0.347 5.347 5 C 0.055 3.945 6 C -0.152 4.152 7 C -0.078 4.078 8 C -0.230 4.230 9 C 0.071 3.929 10 O -0.255 6.255 11 C -0.076 4.076 12 C -0.195 4.195 13 C -0.087 4.087 14 C 0.406 3.594 15 O -0.504 6.504 16 N -0.385 5.385 17 C 0.011 3.989 18 C 0.222 3.778 19 O -0.509 6.509 20 N -0.195 5.195 21 C -0.464 4.464 22 H 0.105 0.895 23 C -0.213 4.213 24 N -0.557 5.557 25 Si 0.820 3.180 26 H -0.195 1.195 27 H -0.197 1.197 28 H -0.194 1.194 29 H 0.105 0.895 30 H 0.127 0.873 31 H 0.147 0.853 32 H 0.084 0.916 33 H 0.139 0.861 34 H 0.095 0.905 35 H 0.140 0.860 36 H 0.175 0.825 37 H 0.171 0.829 38 H 0.134 0.866 39 H 0.088 0.912 40 H 0.081 0.919 41 H 0.142 0.858 42 H 0.136 0.864 43 H 0.247 0.753 44 H 0.108 0.892 45 H 0.106 0.894 46 H 0.232 0.768 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 18.105 -6.842 -18.896 27.050 hybrid contribution -0.989 0.575 0.488 1.244 sum 17.116 -6.267 -18.409 25.906 Atomic orbital electron populations 1.24039 0.96387 1.02422 0.98875 1.23349 0.95884 0.99149 1.01276 1.20817 0.92258 0.95487 0.90315 1.47167 1.13163 1.65517 1.08839 1.20311 0.77762 0.93234 1.03159 1.20290 1.00586 1.00427 0.93878 1.21159 0.95702 0.96037 0.94939 1.21496 1.02418 0.99066 1.00033 1.19236 0.91398 0.88600 0.93680 1.86046 1.62644 1.48926 1.27874 1.23341 1.03101 1.03588 0.77533 1.20557 1.03824 1.01259 0.93832 1.21039 0.94130 0.93559 0.99983 1.15966 0.81544 0.78204 0.83719 1.90852 1.54651 1.64235 1.40615 1.44893 1.12976 1.66594 1.14049 1.20574 0.91864 1.00027 0.86410 1.20375 0.89242 0.83631 0.84595 1.90454 1.68148 1.62162 1.30167 1.41837 1.12395 1.53678 1.11604 1.19731 0.88520 1.39541 0.98618 0.89503 1.26146 1.04411 0.96607 0.94112 1.69691 1.39383 1.44774 1.01839 0.84862 0.76622 0.78127 0.78341 1.19507 1.19717 1.19404 0.89519 0.87273 0.85304 0.91618 0.86143 0.90461 0.85984 0.82499 0.82930 0.86607 0.91230 0.91852 0.85788 0.86443 0.75337 0.89175 0.89442 0.76772 0.91107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.74 14.32 67.79 0.97 -2.77 16 2 C -0.18 -3.19 9.84 25.65 0.25 -2.94 16 3 C 0.13 2.50 5.61 85.63 0.48 2.98 16 4 N -0.61 -14.50 2.44 -848.56 -2.07 -16.57 16 5 C 0.18 3.39 5.54 85.63 0.47 3.87 16 6 C -0.15 -3.08 5.46 -19.85 -0.11 -3.19 16 7 C -0.06 -0.94 9.69 22.25 0.22 -0.72 16 8 C -0.21 -3.52 9.04 22.36 0.20 -3.31 16 9 C 0.12 2.53 6.69 22.51 0.15 2.68 16 10 O -0.34 -6.97 10.50 -92.39 -0.97 -7.94 16 11 C 0.02 0.20 9.81 113.37 1.11 1.31 16 12 C -0.18 -4.35 9.99 22.37 0.22 -4.13 16 13 C -0.07 -1.73 9.69 22.25 0.22 -1.51 16 14 C 0.70 23.21 8.28 179.06 1.48 24.69 16 15 O -0.62 -23.97 15.46 -3.99 -0.06 -24.03 16 16 N -0.73 -25.47 5.40 -482.31 -2.60 -28.07 16 17 C 0.14 5.40 6.15 85.63 0.53 5.92 16 18 C 0.43 20.47 7.85 87.66 0.69 21.16 16 19 O -0.62 -32.24 15.24 -3.08 -0.05 -32.28 16 20 N -0.56 -28.54 5.29 -306.98 -1.62 -30.16 16 21 C -0.33 -18.56 9.68 84.04 0.81 -17.74 16 22 H 0.09 5.04 7.16 -2.91 -0.02 5.02 16 23 C -0.01 -0.64 5.50 84.92 0.47 -0.18 16 24 N -0.92 -49.21 13.05 21.66 0.28 -48.93 16 25 Si 1.00 42.00 29.55 68.60 2.03 44.02 16 26 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 27 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 28 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 29 H 0.09 2.12 7.84 -2.91 -0.02 2.10 16 30 H 0.11 2.02 8.06 -2.91 -0.02 2.00 16 31 H 0.13 1.87 8.06 -2.91 -0.02 1.84 16 32 H 0.07 1.48 6.02 -2.39 -0.01 1.46 16 33 H 0.12 1.45 8.07 -2.38 -0.02 1.43 16 34 H 0.08 1.76 7.35 -2.39 -0.02 1.74 16 35 H 0.12 1.37 8.01 -2.39 -0.02 1.35 16 36 H 0.16 1.34 8.06 -2.91 -0.02 1.31 16 37 H 0.15 1.63 6.30 -2.91 -0.02 1.61 16 38 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.07 0.53 7.66 -2.39 -0.02 0.51 16 40 H 0.06 0.57 7.66 -2.38 -0.02 0.56 16 41 H 0.12 2.99 8.06 -2.91 -0.02 2.96 16 42 H 0.12 3.36 7.60 -2.91 -0.02 3.33 16 43 H 0.41 14.14 5.17 -92.71 -0.48 13.66 16 44 H 0.09 3.34 8.14 -2.39 -0.02 3.32 16 45 H 0.09 3.28 8.14 -2.39 -0.02 3.26 16 46 H 0.40 19.63 7.90 -92.71 -0.73 18.90 16 47 H 0.28 14.03 8.31 -92.70 -0.77 13.26 16 Total: -1.00 -71.45 403.10 2.90 -68.55 By element: Atomic # 1 Polarization: 49.51 SS G_CDS: -0.20 Total: 49.30 kcal Atomic # 6 Polarization: 17.94 SS G_CDS: 8.17 Total: 26.11 kcal Atomic # 7 Polarization: -117.72 SS G_CDS: -6.01 Total: -123.73 kcal Atomic # 8 Polarization: -63.17 SS G_CDS: -1.08 Total: -64.25 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.02 kcal Total: -71.45 2.90 -68.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358317339.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.466 kcal (2) G-P(sol) polarization free energy of solvation -71.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds