Wall clock time and date at job start Wed Apr 1 2020 05:02:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35900 * 117.00281 * 2 1 4 4 C 1.38751 * 120.05243 * 0.03015 * 3 2 1 5 5 C 1.38125 * 119.94680 * 179.97438 * 4 3 2 6 6 C 1.38293 * 120.05080 * 359.74301 * 5 4 3 7 7 C 1.38244 * 120.11190 * 0.51384 * 6 5 4 8 8 C 1.38171 * 120.05436 * 359.48377 * 7 6 5 9 9 C 1.50699 * 120.02521 * 180.27947 * 8 7 6 10 10 H 1.09002 * 110.88272 * 183.88398 * 9 8 7 11 11 C 1.55152 * 111.00561 * 60.00328 * 9 8 7 12 12 C 1.54322 * 102.94353 * 206.41950 * 11 9 8 13 13 N 1.47022 * 107.27053 * 22.19232 * 12 11 9 14 14 C 1.34777 * 125.65109 * 181.09988 * 13 12 11 15 15 O 1.21583 * 120.00164 * 179.97438 * 14 13 12 16 16 N 1.34776 * 119.99549 * 359.97438 * 14 13 12 17 17 C 1.46500 * 119.99870 * 179.97438 * 16 14 13 18 18 C 1.50700 * 109.47416 * 179.97438 * 17 16 14 19 19 O 1.21294 * 119.99749 * 359.97438 * 18 17 16 20 20 N 1.34771 * 120.00235 * 179.97438 * 18 17 16 21 21 C 1.37103 * 120.00175 * 179.97438 * 20 18 17 22 22 H 1.08002 * 119.99412 * 0.02562 * 21 20 18 23 23 C 1.38946 * 119.99919 * 180.02562 * 21 20 18 24 24 N 1.31411 * 120.00168 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 119.99898 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47118 * 359.97438 * 25 23 21 27 27 H 1.48494 * 109.47300 * 119.99902 * 25 23 21 28 28 H 1.48501 * 109.47016 * 239.99855 * 25 23 21 29 29 C 1.47422 * 108.70400 * 1.05999 * 13 12 11 30 30 H 1.08997 * 109.47429 * 59.99669 * 1 2 3 31 31 H 1.09000 * 109.47454 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.46900 * 299.99519 * 1 2 3 33 33 H 1.08006 * 120.02893 * 359.94964 * 4 3 2 34 34 H 1.07993 * 119.97733 * 180.02562 * 5 4 3 35 35 H 1.08001 * 119.94310 * 180.27503 * 6 5 4 36 36 H 1.08002 * 119.97539 * 179.77000 * 7 6 5 37 37 H 1.09002 * 110.72332 * 324.78783 * 11 9 8 38 38 H 1.09004 * 110.72221 * 88.05989 * 11 9 8 39 39 H 1.09000 * 109.88416 * 141.61245 * 12 11 9 40 40 H 1.08997 * 109.88229 * 262.62223 * 12 11 9 41 41 H 0.97002 * 120.00539 * 359.97438 * 16 14 13 42 42 H 1.09007 * 109.46950 * 299.99581 * 17 16 14 43 43 H 1.08999 * 109.47213 * 59.99410 * 17 16 14 44 44 H 0.97000 * 120.00280 * 0.02562 * 20 18 17 45 45 H 0.97003 * 119.99809 * 179.97438 * 24 23 21 46 46 H 1.09004 * 110.36921 * 217.03330 * 29 13 12 47 47 H 1.08998 * 110.37130 * 94.70704 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3752 0.0006 5 6 1.9208 3.6048 0.0012 6 6 3.3019 3.6757 0.0064 7 6 4.0560 2.5171 0.0005 8 6 3.4311 1.2848 0.0000 9 6 4.2537 0.0221 -0.0002 10 1 3.6145 -0.8581 -0.0695 11 6 5.1638 -0.0489 1.2544 12 6 6.3364 -0.9335 0.7812 13 7 6.3726 -0.8616 -0.6868 14 6 7.2420 -1.5137 -1.4840 15 8 7.1786 -1.3795 -2.6907 16 7 8.1816 -2.3145 -0.9434 17 6 9.1263 -3.0237 -1.8099 18 6 10.0655 -3.8441 -0.9638 19 8 9.9568 -3.8367 0.2442 20 7 11.0263 -4.5861 -1.5494 21 6 11.8811 -5.3320 -0.7796 22 1 11.7842 -5.3254 0.2960 23 6 12.8719 -6.0965 -1.3834 24 7 12.9893 -6.1049 -2.6922 25 14 14.0361 -7.1134 -0.3347 26 1 13.6959 -6.9330 1.0996 27 1 13.9055 -8.5472 -0.6982 28 1 15.4328 -6.6680 -0.5715 29 6 5.2999 0.0410 -1.1425 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 0.2128 2.3203 0.0003 34 1 1.3340 4.5113 0.0021 35 1 3.7922 4.6380 0.0113 36 1 5.1344 2.5751 0.0008 37 1 5.5171 0.9444 1.5313 38 1 4.6381 -0.5181 2.0861 39 1 7.2732 -0.5591 1.1939 40 1 6.1763 -1.9633 1.1004 41 1 8.2325 -2.4213 0.0194 42 1 8.5775 -3.6803 -2.4851 43 1 9.6989 -2.3012 -2.3914 44 1 11.1135 -4.5917 -2.5155 45 1 13.6813 -6.6383 -3.1136 46 1 4.8585 -0.3308 -2.0673 47 1 5.6877 1.0497 -1.2850 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000377062119.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:28 Heat of formation + Delta-G solvation = -72.927626 kcal Electronic energy + Delta-G solvation = -29417.325614 eV Core-core repulsion = 25179.483360 eV Total energy + Delta-G solvation = -4237.842254 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.87283 -39.95722 -38.47395 -37.90297 -37.10284 -34.39414 -33.66976 -33.02696 -31.34709 -30.50716 -30.28636 -28.81765 -27.68109 -27.12063 -24.68966 -23.63276 -22.79940 -22.34687 -20.44129 -19.71482 -19.55575 -18.53177 -18.24067 -17.78787 -16.98831 -16.17922 -16.10285 -15.80987 -15.72569 -15.34966 -14.89443 -14.78621 -14.67863 -14.20159 -14.16064 -13.86176 -13.66518 -13.52740 -13.33367 -13.10355 -12.89668 -12.74014 -12.42652 -12.15122 -11.95655 -11.87261 -11.78137 -11.61244 -11.58694 -11.43819 -11.12392 -11.00623 -10.82457 -10.39120 -10.30409 -9.96925 -9.62254 -9.18341 -8.86971 -8.59377 -8.50364 -8.35909 -8.07216 -6.48965 -3.90867 0.93371 1.08871 2.72554 2.90234 3.12026 3.24001 3.30816 3.35705 3.43482 3.78206 4.06400 4.22367 4.25462 4.37190 4.49228 4.63597 4.68041 4.74942 4.75334 4.83246 4.93395 4.99592 5.03958 5.10530 5.15242 5.19864 5.23759 5.31001 5.52617 5.60798 5.68307 5.72201 5.82839 5.88815 5.94940 5.97173 6.05043 6.11195 6.15285 6.23224 6.29634 6.41488 6.81170 7.01429 7.23407 7.48597 7.95428 8.23073 8.48137 8.84030 9.07345 9.42532 9.90457 10.68047 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.027448 B = 0.001698 C = 0.001686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.850827 B =16488.293857 C =16601.499962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.313 6.313 3 C 0.133 3.867 4 C -0.208 4.208 5 C -0.084 4.084 6 C -0.154 4.154 7 C -0.076 4.076 8 C -0.100 4.100 9 C -0.057 4.057 10 H 0.100 0.900 11 C -0.119 4.119 12 C 0.097 3.903 13 N -0.639 5.639 14 C 0.723 3.277 15 O -0.595 6.595 16 N -0.722 5.722 17 C 0.128 3.872 18 C 0.430 3.570 19 O -0.598 6.598 20 N -0.550 5.550 21 C -0.304 4.304 22 H 0.106 0.894 23 C 0.025 3.975 24 N -0.895 5.895 25 Si 0.933 3.067 26 H -0.267 1.267 27 H -0.280 1.280 28 H -0.281 1.281 29 C 0.137 3.863 30 H 0.055 0.945 31 H 0.100 0.900 32 H 0.054 0.946 33 H 0.127 0.873 34 H 0.123 0.877 35 H 0.124 0.876 36 H 0.131 0.869 37 H 0.079 0.921 38 H 0.084 0.916 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.407 0.593 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.396 0.604 45 H 0.273 0.727 46 H 0.079 0.921 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.544 17.833 5.972 30.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.226 6.226 3 C 0.088 3.912 4 C -0.227 4.227 5 C -0.102 4.102 6 C -0.172 4.172 7 C -0.094 4.094 8 C -0.101 4.101 9 C -0.076 4.076 10 H 0.119 0.881 11 C -0.157 4.157 12 C -0.026 4.026 13 N -0.378 5.378 14 C 0.425 3.575 15 O -0.474 6.474 16 N -0.380 5.380 17 C 0.000 4.000 18 C 0.215 3.785 19 O -0.484 6.484 20 N -0.185 5.185 21 C -0.433 4.433 22 H 0.124 0.876 23 C -0.178 4.178 24 N -0.535 5.535 25 Si 0.759 3.241 26 H -0.192 1.192 27 H -0.206 1.206 28 H -0.206 1.206 29 C 0.013 3.987 30 H 0.073 0.927 31 H 0.119 0.881 32 H 0.073 0.927 33 H 0.145 0.855 34 H 0.141 0.859 35 H 0.142 0.858 36 H 0.149 0.851 37 H 0.097 0.903 38 H 0.102 0.898 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.245 0.755 42 H 0.100 0.900 43 H 0.100 0.900 44 H 0.230 0.770 45 H 0.083 0.917 46 H 0.097 0.903 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -24.330 17.540 5.701 30.530 hybrid contribution 0.408 -0.413 0.295 0.651 sum -23.922 17.127 5.995 30.025 Atomic orbital electron populations 1.23069 0.78353 1.04108 1.01245 1.86089 1.21318 1.26707 1.88527 1.18820 0.91691 0.84317 0.96397 1.21216 0.99981 0.92359 1.09116 1.20943 0.94745 0.96923 0.97565 1.21061 0.93876 0.98452 1.03844 1.20929 1.00234 0.90985 0.97260 1.18929 0.90083 0.95016 1.06063 1.21163 0.95092 0.96088 0.95271 0.88132 1.22720 0.94999 1.00559 0.97381 1.22030 0.99211 1.00642 0.80712 1.47444 1.34366 1.49690 1.06280 1.15339 0.79026 0.78724 0.84444 1.90905 1.75174 1.69084 1.12256 1.44778 1.33266 1.48531 1.11392 1.20795 0.91012 0.95786 0.92449 1.19763 0.84823 0.85214 0.88650 1.90488 1.74434 1.69109 1.14403 1.41793 1.27355 1.39437 1.09896 1.19778 1.08924 1.21736 0.92891 0.87638 1.25325 0.98348 0.98070 0.96052 1.69627 1.34323 1.40954 1.08581 0.85755 0.79416 0.79007 0.79885 1.19160 1.20641 1.20644 1.22090 0.85882 0.93420 0.97264 0.92651 0.88123 0.92690 0.85518 0.85889 0.85792 0.85090 0.90269 0.89754 0.91191 0.91215 0.75547 0.89997 0.89998 0.77007 0.91670 0.90280 0.91582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.81 101.05 0.99 1.13 16 2 O -0.31 -2.79 9.32 -19.42 -0.18 -2.97 16 3 C 0.13 1.20 6.66 -39.22 -0.26 0.94 16 4 C -0.21 -1.55 9.04 -39.43 -0.36 -1.90 16 5 C -0.08 -0.57 10.04 -39.60 -0.40 -0.97 16 6 C -0.15 -1.11 10.04 -39.56 -0.40 -1.50 16 7 C -0.08 -0.61 8.30 -39.60 -0.33 -0.94 16 8 C -0.10 -0.91 5.01 -104.47 -0.52 -1.43 16 9 C -0.06 -0.55 3.20 -89.63 -0.29 -0.84 16 10 H 0.10 1.06 7.11 -51.93 -0.37 0.69 16 11 C -0.12 -1.01 6.37 -24.90 -0.16 -1.17 16 12 C 0.10 1.06 6.15 -3.07 -0.02 1.04 16 13 N -0.64 -8.90 3.33 -176.24 -0.59 -9.49 16 14 C 0.72 12.91 8.49 -86.92 -0.74 12.17 16 15 O -0.60 -12.50 16.60 5.29 0.09 -12.41 16 16 N -0.72 -13.07 5.49 -66.41 -0.36 -13.44 16 17 C 0.13 2.49 6.15 -5.19 -0.03 2.46 16 18 C 0.43 10.09 7.85 -10.99 -0.09 10.00 16 19 O -0.60 -15.53 15.24 5.55 0.08 -15.45 16 20 N -0.55 -13.85 5.29 -10.96 -0.06 -13.91 16 21 C -0.30 -8.34 9.68 -14.93 -0.14 -8.48 16 22 H 0.11 3.01 7.16 -52.49 -0.38 2.64 16 23 C 0.02 0.65 5.50 -17.47 -0.10 0.56 16 24 N -0.89 -24.11 13.05 55.50 0.72 -23.39 16 25 Si 0.93 20.69 29.55 -169.99 -5.02 15.67 16 26 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 27 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 28 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 29 C 0.14 1.63 6.31 -2.53 -0.02 1.61 16 30 H 0.05 0.24 7.66 -51.93 -0.40 -0.16 16 31 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.05 0.22 7.66 -51.93 -0.40 -0.18 16 33 H 0.13 0.68 6.30 -52.48 -0.33 0.35 16 34 H 0.12 0.57 8.06 -52.49 -0.42 0.15 16 35 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 36 H 0.13 0.93 7.00 -52.49 -0.37 0.57 16 37 H 0.08 0.60 7.20 -51.93 -0.37 0.22 16 38 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 41 H 0.41 7.20 6.42 -40.82 -0.26 6.94 16 42 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 43 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 44 H 0.40 9.61 7.90 -40.82 -0.32 9.29 16 45 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 46 H 0.08 1.05 8.04 -51.93 -0.42 0.63 16 47 H 0.07 0.73 6.64 -51.93 -0.35 0.39 16 LS Contribution 390.18 15.07 5.88 5.88 Total: -1.00 -33.66 390.18 -8.76 -42.43 By element: Atomic # 1 Polarization: 20.91 SS G_CDS: -6.48 Total: 14.43 kcal Atomic # 6 Polarization: 15.51 SS G_CDS: -2.85 Total: 12.66 kcal Atomic # 7 Polarization: -59.94 SS G_CDS: -0.28 Total: -60.23 kcal Atomic # 8 Polarization: -30.83 SS G_CDS: -0.01 Total: -30.84 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.66 -8.76 -42.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000377062119.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.500 kcal (2) G-P(sol) polarization free energy of solvation -33.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds