Wall clock time and date at job start Wed Apr 1 2020 05:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35905 * 117.00049 * 2 1 4 4 C 1.38751 * 120.05319 * 0.02562 * 3 2 1 5 5 C 1.38121 * 119.94143 * 179.97438 * 4 3 2 6 6 C 1.38288 * 120.05700 * 359.97438 * 5 4 3 7 7 C 1.38250 * 120.11010 * 359.74270 * 6 5 4 8 8 C 1.38161 * 120.05402 * 0.51386 * 7 6 5 9 9 C 1.50696 * 120.02867 * 179.76473 * 8 7 6 10 10 H 1.09002 * 110.92226 * 182.16954 * 9 8 7 11 11 C 1.55158 * 111.00814 * 306.07517 * 9 8 7 12 12 C 1.54329 * 103.02421 * 153.37819 * 11 9 8 13 13 N 1.47022 * 107.26679 * 338.14117 * 12 11 9 14 14 C 1.34771 * 125.65011 * 178.84910 * 13 12 11 15 15 O 1.21592 * 120.00201 * 179.69107 * 14 13 12 16 16 N 1.34780 * 120.00213 * 359.69592 * 14 13 12 17 17 C 1.46500 * 120.00259 * 180.02562 * 16 14 13 18 18 C 1.50696 * 109.46924 * 179.97438 * 17 16 14 19 19 O 1.21295 * 120.00238 * 359.97438 * 18 17 16 20 20 N 1.34777 * 120.00076 * 180.02562 * 18 17 16 21 21 C 1.37105 * 120.00244 * 180.02562 * 20 18 17 22 22 H 1.07998 * 119.99708 * 359.97438 * 21 20 18 23 23 C 1.38945 * 120.00017 * 179.97438 * 21 20 18 24 24 N 1.31413 * 119.99901 * 359.71836 * 23 21 20 25 25 Si 1.86800 * 120.00194 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47364 * 179.72210 * 25 23 21 27 27 H 1.48508 * 109.46883 * 299.72333 * 25 23 21 28 28 H 1.48497 * 109.46870 * 59.72143 * 25 23 21 29 29 C 1.47430 * 108.70251 * 358.58542 * 13 12 11 30 30 H 1.08997 * 109.47347 * 300.00753 * 1 2 3 31 31 H 1.09002 * 109.46865 * 60.00185 * 1 2 3 32 32 H 1.09001 * 109.47161 * 179.97438 * 1 2 3 33 33 H 1.08003 * 120.03081 * 359.94710 * 4 3 2 34 34 H 1.08004 * 119.97518 * 180.02562 * 5 4 3 35 35 H 1.08005 * 119.94776 * 180.02562 * 6 5 4 36 36 H 1.07997 * 119.97083 * 180.25663 * 7 6 5 37 37 H 1.08999 * 110.71808 * 271.93855 * 11 9 8 38 38 H 1.09004 * 110.71642 * 35.02868 * 11 9 8 39 39 H 1.09003 * 109.98932 * 218.66827 * 12 11 9 40 40 H 1.08994 * 109.77996 * 97.49864 * 12 11 9 41 41 H 0.97005 * 119.99563 * 359.97438 * 16 14 13 42 42 H 1.08999 * 109.46977 * 60.00015 * 17 16 14 43 43 H 1.08993 * 109.47026 * 299.99632 * 17 16 14 44 44 H 0.97004 * 119.99652 * 359.97438 * 20 18 17 45 45 H 0.97000 * 120.00371 * 0.28325 * 24 23 21 46 46 H 1.08993 * 110.36384 * 143.19461 * 29 13 12 47 47 H 1.09000 * 110.36476 * 265.51987 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9209 3.6047 0.0011 6 6 3.3019 3.6758 0.0016 7 6 4.0560 2.5170 0.0070 8 6 3.4312 1.2848 0.0011 9 6 4.2537 0.0221 0.0016 10 1 3.6139 -0.8592 -0.0420 11 6 5.2772 0.0246 -1.1645 12 6 6.4066 -0.8859 -0.6380 13 7 6.3019 -0.9075 0.8284 14 6 7.0958 -1.6078 1.6623 15 8 6.9204 -1.5458 2.8639 16 7 8.0844 -2.3768 1.1645 17 6 8.9471 -3.1386 2.0710 18 6 9.9627 -3.9098 1.2682 19 8 9.9654 -3.8313 0.0578 20 7 10.8675 -4.6876 1.8950 21 6 11.7918 -5.3889 1.1646 22 1 11.7947 -5.3183 0.0869 23 6 12.7249 -6.1904 1.8109 24 7 12.7249 -6.2718 3.1225 25 14 13.9839 -7.1464 0.8157 26 1 14.8627 -7.9133 1.7350 27 1 13.2837 -8.0850 -0.0976 28 1 14.8062 -6.2010 0.0187 29 6 5.1886 -0.0310 1.2357 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 0.2128 2.3204 0.0001 34 1 1.3341 4.5114 0.0019 35 1 3.7923 4.6381 0.0024 36 1 5.1344 2.5752 0.0116 37 1 4.8328 -0.3919 -2.0685 38 1 5.6497 1.0323 -1.3486 39 1 7.3763 -0.4862 -0.9345 40 1 6.2822 -1.8940 -1.0333 41 1 8.2242 -2.4265 0.2059 42 1 8.3403 -3.8331 2.6520 43 1 9.4608 -2.4533 2.7451 44 1 10.8651 -4.7507 2.8630 45 1 12.0709 -5.7757 3.6393 46 1 4.6640 -0.4569 2.0910 47 1 5.5586 0.9661 1.4745 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000377062120.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:31 Heat of formation + Delta-G solvation = -95.647178 kcal Electronic energy + Delta-G solvation = -29463.262527 eV Core-core repulsion = 25224.435080 eV Total energy + Delta-G solvation = -4238.827447 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.73300 -41.10746 -40.28877 -38.94814 -37.96748 -36.62487 -35.44267 -33.99515 -33.23517 -31.19218 -31.02864 -29.87351 -28.72121 -27.96736 -26.29956 -24.73034 -23.67957 -22.91459 -21.82405 -21.18266 -21.10060 -20.09828 -19.56849 -19.02360 -17.85957 -17.64214 -17.32716 -17.09815 -16.63476 -16.59793 -16.50354 -16.13826 -15.68667 -15.49423 -15.35785 -15.28214 -14.70692 -14.43840 -14.36156 -14.21504 -14.01629 -13.79419 -13.71626 -13.42309 -13.39709 -12.91917 -12.79820 -12.59416 -12.52246 -12.35401 -11.97619 -11.95398 -11.90806 -11.62740 -11.58838 -11.58450 -11.48630 -10.63413 -10.41234 -10.18675 -9.77757 -9.63064 -9.07445 -8.96737 -6.12615 0.34644 0.50708 1.38638 1.46952 1.56545 1.84348 1.86726 1.98850 2.39458 2.40338 2.74833 2.78777 3.03792 3.12954 3.49747 3.65895 3.71652 3.95316 3.96306 4.10705 4.19158 4.21917 4.28861 4.31744 4.32806 4.34490 4.39593 4.48612 4.55337 4.61213 4.70378 4.74349 4.78582 4.85942 4.97999 5.08136 5.16297 5.19759 5.23137 5.41251 5.55537 5.57669 5.63014 5.87629 5.88267 5.92418 6.45803 6.46652 6.61219 6.81192 7.31354 7.39239 7.73406 8.49839 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.027415 B = 0.001703 C = 0.001694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.105720 B =16437.536090 C =16524.212158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.336 6.336 3 C 0.117 3.883 4 C -0.213 4.213 5 C -0.085 4.085 6 C -0.160 4.160 7 C -0.082 4.082 8 C -0.118 4.118 9 C -0.044 4.044 10 H 0.088 0.912 11 C -0.108 4.108 12 C 0.091 3.909 13 N -0.635 5.635 14 C 0.720 3.280 15 O -0.631 6.631 16 N -0.722 5.722 17 C 0.141 3.859 18 C 0.439 3.561 19 O -0.617 6.617 20 N -0.572 5.572 21 C -0.412 4.412 22 H 0.082 0.918 23 C -0.040 4.040 24 N -0.911 5.911 25 Si 1.136 2.864 26 H -0.274 1.274 27 H -0.271 1.271 28 H -0.270 1.270 29 C 0.135 3.865 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.111 0.889 33 H 0.145 0.855 34 H 0.147 0.853 35 H 0.143 0.857 36 H 0.139 0.861 37 H 0.100 0.900 38 H 0.095 0.905 39 H 0.077 0.923 40 H 0.069 0.931 41 H 0.409 0.591 42 H 0.092 0.908 43 H 0.093 0.907 44 H 0.387 0.613 45 H 0.260 0.740 46 H 0.059 0.941 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.275 19.944 -8.488 33.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.250 6.250 3 C 0.072 3.928 4 C -0.231 4.231 5 C -0.103 4.103 6 C -0.178 4.178 7 C -0.100 4.100 8 C -0.119 4.119 9 C -0.063 4.063 10 H 0.106 0.894 11 C -0.146 4.146 12 C -0.031 4.031 13 N -0.372 5.372 14 C 0.422 3.578 15 O -0.513 6.513 16 N -0.380 5.380 17 C 0.013 3.987 18 C 0.226 3.774 19 O -0.504 6.504 20 N -0.209 5.209 21 C -0.541 4.541 22 H 0.100 0.900 23 C -0.239 4.239 24 N -0.550 5.550 25 Si 0.955 3.045 26 H -0.199 1.199 27 H -0.196 1.196 28 H -0.196 1.196 29 C 0.013 3.987 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.129 0.871 33 H 0.163 0.837 34 H 0.165 0.835 35 H 0.161 0.839 36 H 0.156 0.844 37 H 0.118 0.882 38 H 0.113 0.887 39 H 0.095 0.905 40 H 0.088 0.912 41 H 0.248 0.752 42 H 0.110 0.890 43 H 0.111 0.889 44 H 0.222 0.778 45 H 0.071 0.929 46 H 0.077 0.923 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -23.960 18.720 -8.245 31.504 hybrid contribution -1.454 0.902 0.333 1.743 sum -25.414 19.621 -7.912 33.068 Atomic orbital electron populations 1.23297 0.76703 1.05236 1.02224 1.86057 1.23188 1.27118 1.88664 1.19054 0.91960 0.84916 0.96913 1.21484 1.00995 0.92081 1.08588 1.21300 0.94982 0.97636 0.96341 1.21354 0.94232 0.98960 1.03213 1.21072 1.00761 0.90939 0.97230 1.18937 0.90322 0.94905 1.07709 1.20969 0.94722 0.96335 0.94257 0.89376 1.22732 0.93196 1.00804 0.97829 1.22273 1.00891 1.01388 0.78551 1.47516 1.33870 1.48456 1.07361 1.15436 0.79377 0.78759 0.84271 1.90875 1.74913 1.71001 1.14505 1.44681 1.33267 1.48840 1.11215 1.20605 0.91379 0.95253 0.91501 1.20328 0.84724 0.83922 0.88426 1.90471 1.75529 1.68990 1.15457 1.41881 1.28937 1.40996 1.09123 1.20596 1.12507 1.27087 0.93919 0.90025 1.27945 1.00903 0.97600 0.97435 1.70966 1.36498 1.41542 1.05958 0.82604 0.73181 0.75228 0.73446 1.19913 1.19585 1.19567 1.22217 0.85536 0.93505 0.97465 0.91850 0.91446 0.87063 0.83733 0.83502 0.83914 0.84374 0.88160 0.88652 0.90489 0.91235 0.75247 0.89001 0.88860 0.77836 0.92865 0.92282 0.90706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 113.37 1.11 1.29 16 2 O -0.34 -5.86 9.32 -92.49 -0.86 -6.72 16 3 C 0.12 2.00 6.66 22.51 0.15 2.15 16 4 C -0.21 -2.77 9.04 22.36 0.20 -2.57 16 5 C -0.08 -0.95 10.04 22.25 0.22 -0.72 16 6 C -0.16 -1.91 10.04 22.28 0.22 -1.68 16 7 C -0.08 -1.17 8.28 22.25 0.18 -0.99 16 8 C -0.12 -2.02 5.01 -19.77 -0.10 -2.12 16 9 C -0.04 -0.81 3.21 -10.15 -0.03 -0.84 16 10 H 0.09 1.86 7.11 -2.39 -0.02 1.85 16 11 C -0.11 -1.63 6.35 31.78 0.20 -1.43 16 12 C 0.09 1.87 6.15 86.73 0.53 2.40 16 13 N -0.63 -17.44 3.33 -829.73 -2.76 -20.20 16 14 C 0.72 25.58 8.49 179.06 1.52 27.10 16 15 O -0.63 -26.60 16.60 -4.01 -0.07 -26.67 16 16 N -0.72 -25.88 5.49 -482.31 -2.65 -28.52 16 17 C 0.14 5.41 6.15 85.63 0.53 5.94 16 18 C 0.44 20.68 7.85 87.66 0.69 21.37 16 19 O -0.62 -32.50 15.24 -3.08 -0.05 -32.55 16 20 N -0.57 -28.88 5.28 -306.98 -1.62 -30.51 16 21 C -0.41 -23.05 9.68 84.04 0.81 -22.24 16 22 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 23 C -0.04 -2.13 5.50 84.92 0.47 -1.66 16 24 N -0.91 -50.57 13.68 21.66 0.30 -50.28 16 25 Si 1.14 47.43 29.92 68.60 2.05 49.48 16 26 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 27 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 28 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 29 C 0.14 3.21 6.33 86.86 0.55 3.76 16 30 H 0.06 0.47 7.66 -2.39 -0.02 0.45 16 31 H 0.07 0.44 7.66 -2.39 -0.02 0.42 16 32 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.15 1.24 6.30 -2.91 -0.02 1.22 16 34 H 0.15 0.88 8.06 -2.91 -0.02 0.86 16 35 H 0.14 1.10 8.06 -2.91 -0.02 1.08 16 36 H 0.14 1.66 7.01 -2.91 -0.02 1.64 16 37 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.09 1.17 6.78 -2.38 -0.02 1.15 16 39 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.41 14.36 6.42 -92.70 -0.60 13.77 16 42 H 0.09 3.37 8.14 -2.39 -0.02 3.35 16 43 H 0.09 3.40 8.14 -2.39 -0.02 3.38 16 44 H 0.39 18.19 6.73 -92.71 -0.62 17.56 16 45 H 0.26 14.06 6.78 -92.71 -0.63 13.43 16 46 H 0.06 1.63 8.04 -2.39 -0.02 1.61 16 47 H 0.07 1.64 7.05 -2.39 -0.02 1.62 16 Total: -1.00 -75.15 388.45 1.55 -73.59 By element: Atomic # 1 Polarization: 42.67 SS G_CDS: -0.06 Total: 42.61 kcal Atomic # 6 Polarization: 22.50 SS G_CDS: 7.27 Total: 29.76 kcal Atomic # 7 Polarization: -122.78 SS G_CDS: -6.73 Total: -129.51 kcal Atomic # 8 Polarization: -64.96 SS G_CDS: -0.98 Total: -65.94 kcal Atomic # 14 Polarization: 47.43 SS G_CDS: 2.05 Total: 49.48 kcal Total: -75.15 1.55 -73.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000377062120.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.055 kcal (2) G-P(sol) polarization free energy of solvation -75.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds