Wall clock time and date at job start Wed Apr 1 2020 05:00:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35903 * 117.00171 * 2 1 4 4 C 1.38752 * 120.04524 * 359.97438 * 3 2 1 5 5 C 1.38154 * 119.96924 * 180.02562 * 4 3 2 6 6 C 1.38465 * 119.83030 * 0.02562 * 5 4 3 7 7 C 1.37309 * 120.29940 * 0.02562 * 6 5 4 8 8 C 1.38331 * 120.29024 * 359.95982 * 7 6 5 9 9 C 1.51248 * 120.27384 * 179.97438 * 7 6 5 10 10 C 1.53263 * 108.65869 * 289.27882 * 9 7 6 11 11 N 1.45963 * 109.75085 * 80.84404 * 10 9 7 12 12 C 1.34781 * 118.41771 * 114.91988 * 11 10 9 13 13 O 1.21589 * 120.00123 * 5.40873 * 12 11 10 14 14 N 1.34781 * 119.99825 * 185.40467 * 12 11 10 15 15 C 1.46495 * 119.99570 * 175.03889 * 14 12 11 16 16 C 1.50706 * 109.46862 * 180.02562 * 15 14 12 17 17 O 1.21288 * 120.00093 * 359.97438 * 16 15 14 18 18 N 1.34780 * 119.99726 * 180.02562 * 16 15 14 19 19 C 1.37099 * 119.99566 * 179.97438 * 18 16 15 20 20 H 1.08001 * 119.99921 * 359.97438 * 19 18 16 21 21 C 1.38951 * 119.99953 * 179.97438 * 19 18 16 22 22 N 1.31405 * 119.99678 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99955 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47169 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47253 * 120.00155 * 23 21 19 26 26 H 1.48501 * 109.46644 * 239.99768 * 23 21 19 27 27 C 1.45968 * 123.16408 * 295.21277 * 11 10 9 28 28 C 1.51252 * 119.41042 * 180.02562 * 6 5 4 29 29 H 1.09001 * 109.47540 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47266 * 300.00450 * 1 2 3 31 31 H 1.09005 * 109.47160 * 60.00022 * 1 2 3 32 32 H 1.07996 * 120.01772 * 359.96816 * 4 3 2 33 33 H 1.08001 * 120.08236 * 179.97438 * 5 4 3 34 34 H 1.08000 * 120.14249 * 180.02562 * 8 7 6 35 35 H 1.08998 * 109.61000 * 169.52495 * 9 7 6 36 36 H 1.08997 * 109.60595 * 49.02780 * 9 7 6 37 37 H 1.08998 * 109.42754 * 320.76494 * 10 9 7 38 38 H 1.09000 * 109.38129 * 200.90228 * 10 9 7 39 39 H 0.97001 * 119.99791 * 355.04090 * 14 12 11 40 40 H 1.08997 * 109.47433 * 60.00456 * 15 14 12 41 41 H 1.09002 * 109.47730 * 300.00064 * 15 14 12 42 42 H 0.96994 * 120.00165 * 359.97438 * 18 16 15 43 43 H 0.97007 * 120.00260 * 179.97438 * 22 21 19 44 44 H 1.09000 * 109.42505 * 184.83044 * 27 11 10 45 45 H 1.09001 * 109.42364 * 304.66887 * 27 11 10 46 46 H 1.09000 * 109.60159 * 10.53507 * 28 6 5 47 47 H 1.09001 * 109.60418 * 131.02787 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2912 2.3752 -0.0005 5 6 1.9201 3.6053 -0.0011 6 6 3.3032 3.6718 -0.0016 7 6 4.0521 2.5209 -0.0021 8 6 3.4314 1.2846 -0.0013 9 6 5.5628 2.5942 -0.0033 10 6 6.0282 3.0968 -1.3743 11 7 5.9083 4.5503 -1.4337 12 6 7.0338 5.2825 -1.5509 13 8 8.1057 4.7294 -1.7037 14 7 6.9709 6.6278 -1.4990 15 6 8.2032 7.4198 -1.5171 16 6 7.8593 8.8855 -1.4494 17 8 6.6990 9.2342 -1.3921 18 7 8.8411 9.8089 -1.4535 19 6 8.5281 11.1423 -1.3923 20 1 7.4950 11.4527 -1.3414 21 6 9.5403 12.0944 -1.3960 22 7 10.7973 11.7166 -1.4575 23 14 9.1139 13.9111 -1.3120 24 1 7.6389 14.0711 -1.2498 25 1 9.7287 14.5083 -0.0994 26 1 9.6354 14.5982 -2.5209 27 6 4.6287 5.2493 -1.3658 28 6 3.9818 5.0235 -0.0016 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 0.2127 2.3199 -0.0015 33 1 1.3344 4.5127 -0.0019 34 1 4.0228 0.3809 -0.0013 35 1 5.9772 1.6035 0.1831 36 1 5.8960 3.2844 0.7717 37 1 5.4102 2.6501 -2.1532 38 1 7.0689 2.8123 -1.5297 39 1 6.1098 7.0715 -1.4497 40 1 8.7519 7.2172 -2.4369 41 1 8.8201 7.1517 -0.6594 42 1 9.7689 9.5301 -1.4996 43 1 11.5040 12.3811 -1.4605 44 1 4.7904 6.3168 -1.5160 45 1 3.9670 4.8705 -2.1448 46 1 3.2437 5.8032 0.1866 47 1 4.7486 5.0478 0.7727 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000377065271.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:38 Heat of formation + Delta-G solvation = -67.580542 kcal Electronic energy + Delta-G solvation = -29842.033431 eV Core-core repulsion = 25604.423044 eV Total energy + Delta-G solvation = -4237.610387 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.95759 -40.09104 -38.63059 -38.08558 -35.91311 -34.62435 -33.90557 -33.17143 -32.16760 -31.36619 -30.29946 -28.19949 -27.40615 -26.91711 -24.65851 -24.13401 -23.23498 -22.28219 -20.48011 -19.68694 -19.59036 -18.47838 -18.04470 -17.83987 -16.74468 -16.27192 -16.08823 -15.85688 -15.56984 -15.51876 -14.85133 -14.70745 -14.47592 -14.37624 -14.25486 -14.02548 -13.68119 -13.61669 -13.43045 -13.09298 -12.97640 -12.53332 -12.26276 -12.16787 -12.11995 -11.91129 -11.67593 -11.62915 -11.45947 -11.21342 -11.14188 -11.07068 -10.88872 -10.40974 -10.32230 -9.90153 -9.64472 -9.16824 -8.92574 -8.62220 -8.55632 -8.21925 -8.09533 -6.51143 -3.93078 1.04403 1.15210 2.74371 2.92441 3.10290 3.22560 3.29088 3.35893 3.43114 3.75558 3.95504 4.13926 4.41399 4.43979 4.56606 4.70065 4.74468 4.85643 4.89376 4.92338 4.99404 5.03563 5.06513 5.12921 5.17649 5.19502 5.25367 5.31635 5.50596 5.60505 5.71172 5.72797 5.87991 5.92120 5.95648 6.02353 6.04265 6.09206 6.13649 6.39909 6.47012 6.65106 6.76340 7.00086 7.07886 7.46452 7.93071 8.15422 8.45565 8.77248 9.05084 9.40145 9.87852 10.65789 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.025473 B = 0.001874 C = 0.001768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.945168 B =14939.145052 C =15834.648583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.320 6.320 3 C 0.122 3.878 4 C -0.211 4.211 5 C -0.074 4.074 6 C -0.114 4.114 7 C -0.038 4.038 8 C -0.148 4.148 9 C -0.099 4.099 10 C 0.136 3.864 11 N -0.626 5.626 12 C 0.702 3.298 13 O -0.595 6.595 14 N -0.725 5.725 15 C 0.126 3.874 16 C 0.429 3.571 17 O -0.599 6.599 18 N -0.549 5.549 19 C -0.305 4.305 20 H 0.106 0.894 21 C 0.025 3.975 22 N -0.894 5.894 23 Si 0.932 3.068 24 H -0.267 1.267 25 H -0.280 1.280 26 H -0.280 1.280 27 C 0.115 3.885 28 C -0.096 4.096 29 H 0.098 0.902 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.126 0.874 33 H 0.127 0.873 34 H 0.131 0.869 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.067 0.933 38 H 0.104 0.896 39 H 0.406 0.594 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.396 0.604 43 H 0.274 0.726 44 H 0.090 0.910 45 H 0.072 0.928 46 H 0.085 0.915 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.470 -21.099 3.005 27.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.233 6.233 3 C 0.077 3.923 4 C -0.230 4.230 5 C -0.092 4.092 6 C -0.114 4.114 7 C -0.038 4.038 8 C -0.166 4.166 9 C -0.137 4.137 10 C 0.012 3.988 11 N -0.364 5.364 12 C 0.403 3.597 13 O -0.474 6.474 14 N -0.386 5.386 15 C -0.002 4.002 16 C 0.215 3.785 17 O -0.486 6.486 18 N -0.184 5.184 19 C -0.434 4.434 20 H 0.124 0.876 21 C -0.177 4.177 22 N -0.534 5.534 23 Si 0.759 3.241 24 H -0.192 1.192 25 H -0.206 1.206 26 H -0.206 1.206 27 C -0.009 4.009 28 C -0.134 4.134 29 H 0.117 0.883 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.143 0.857 33 H 0.145 0.855 34 H 0.149 0.851 35 H 0.103 0.897 36 H 0.103 0.897 37 H 0.085 0.915 38 H 0.122 0.878 39 H 0.247 0.753 40 H 0.100 0.900 41 H 0.099 0.901 42 H 0.230 0.770 43 H 0.083 0.917 44 H 0.108 0.892 45 H 0.091 0.909 46 H 0.103 0.897 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -17.201 -21.311 2.928 27.543 hybrid contribution -0.432 1.091 0.099 1.178 sum -17.633 -20.220 3.027 26.999 Atomic orbital electron populations 1.23040 0.78466 1.03858 1.01342 1.86063 1.21320 1.27091 1.88864 1.19013 0.92300 0.84076 0.96904 1.21203 0.99890 0.92386 1.09485 1.20938 0.93743 0.97081 0.97420 1.19575 0.93255 0.94965 1.03599 1.19483 0.95802 0.91616 0.96917 1.20366 0.91224 0.97986 1.07049 1.21285 0.90527 1.02876 0.99057 1.21234 1.03622 0.78445 0.95476 1.46858 1.05099 1.06224 1.78220 1.15929 0.84127 0.81720 0.77925 1.90882 1.27677 1.71134 1.57710 1.45073 1.10801 1.04099 1.78608 1.20798 0.86290 0.89985 1.03136 1.19766 0.86531 0.86756 0.85459 1.90480 1.19444 1.81299 1.57355 1.41793 1.08112 1.05991 1.62489 1.19776 0.95140 0.80504 1.47980 0.87631 1.25323 0.94677 1.00897 0.96841 1.69622 0.99047 1.35424 1.49321 0.85761 0.78917 0.81599 0.77823 1.19161 1.20633 1.20635 1.21381 0.84947 0.97541 0.97006 1.21079 1.00241 0.93781 0.98289 0.88312 0.92701 0.92667 0.85653 0.85534 0.85135 0.89679 0.89725 0.91500 0.87805 0.75250 0.89954 0.90083 0.77012 0.91651 0.89200 0.90936 0.89655 0.89961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.14 16 2 O -0.32 -2.93 10.50 -19.44 -0.20 -3.13 16 3 C 0.12 1.18 6.69 -39.21 -0.26 0.92 16 4 C -0.21 -1.81 9.04 -39.42 -0.36 -2.17 16 5 C -0.07 -0.64 9.67 -39.53 -0.38 -1.02 16 6 C -0.11 -1.09 5.05 -104.61 -0.53 -1.62 16 7 C -0.04 -0.37 5.04 -104.66 -0.53 -0.90 16 8 C -0.15 -1.43 9.61 -39.36 -0.38 -1.81 16 9 C -0.10 -0.94 5.48 -27.48 -0.15 -1.09 16 10 C 0.14 1.49 6.07 -4.20 -0.03 1.46 16 11 N -0.63 -7.96 2.76 -180.32 -0.50 -8.46 16 12 C 0.70 11.51 8.20 -86.91 -0.71 10.79 16 13 O -0.60 -11.50 15.53 5.29 0.08 -11.42 16 14 N -0.73 -12.29 5.41 -66.41 -0.36 -12.65 16 15 C 0.13 2.35 6.16 -5.19 -0.03 2.32 16 16 C 0.43 9.77 7.85 -10.98 -0.09 9.69 16 17 O -0.60 -15.09 15.24 5.55 0.08 -15.01 16 18 N -0.55 -13.53 5.29 -10.96 -0.06 -13.59 16 19 C -0.30 -8.22 9.68 -14.93 -0.14 -8.37 16 20 H 0.11 2.97 7.16 -52.49 -0.38 2.59 16 21 C 0.03 0.66 5.50 -17.47 -0.10 0.57 16 22 N -0.89 -23.78 13.05 55.50 0.72 -23.05 16 23 Si 0.93 20.42 29.55 -169.99 -5.02 15.40 16 24 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 25 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 26 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 27 C 0.12 1.22 5.99 -4.50 -0.03 1.20 16 28 C -0.10 -0.91 5.46 -27.79 -0.15 -1.06 16 29 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.05 0.24 7.66 -51.93 -0.40 -0.15 16 31 H 0.05 0.25 7.66 -51.93 -0.40 -0.15 16 32 H 0.13 0.81 6.30 -52.49 -0.33 0.48 16 33 H 0.13 0.87 7.96 -52.49 -0.42 0.45 16 34 H 0.13 1.11 7.96 -52.49 -0.42 0.69 16 35 H 0.08 0.66 7.90 -51.93 -0.41 0.25 16 36 H 0.08 0.88 7.21 -51.93 -0.37 0.51 16 37 H 0.07 0.67 7.94 -51.93 -0.41 0.26 16 38 H 0.10 1.27 6.74 -51.93 -0.35 0.92 16 39 H 0.41 6.68 4.70 -40.82 -0.19 6.49 16 40 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 41 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 42 H 0.40 9.42 7.90 -40.82 -0.32 9.09 16 43 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 44 H 0.09 1.01 5.31 -51.93 -0.28 0.74 16 45 H 0.07 0.71 7.94 -51.93 -0.41 0.30 16 46 H 0.08 0.69 7.90 -51.93 -0.41 0.28 16 47 H 0.08 0.87 7.21 -51.93 -0.37 0.49 16 LS Contribution 382.13 15.07 5.76 5.76 Total: -1.00 -32.46 382.13 -8.64 -41.10 By element: Atomic # 1 Polarization: 21.28 SS G_CDS: -6.27 Total: 15.00 kcal Atomic # 6 Polarization: 12.92 SS G_CDS: -2.87 Total: 10.05 kcal Atomic # 7 Polarization: -57.56 SS G_CDS: -0.19 Total: -57.75 kcal Atomic # 8 Polarization: -29.52 SS G_CDS: -0.04 Total: -29.56 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.46 -8.64 -41.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000377065271.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.485 kcal (2) G-P(sol) polarization free energy of solvation -32.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds