Wall clock time and date at job start Wed Apr 1 2020 05:00:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35903 * 117.00171 * 2 1 4 4 C 1.38752 * 120.04524 * 359.97438 * 3 2 1 5 5 C 1.38154 * 119.96924 * 180.02562 * 4 3 2 6 6 C 1.38465 * 119.83030 * 0.02562 * 5 4 3 7 7 C 1.37309 * 120.29940 * 0.02562 * 6 5 4 8 8 C 1.38331 * 120.29024 * 359.95982 * 7 6 5 9 9 C 1.51248 * 120.27384 * 179.97438 * 7 6 5 10 10 C 1.53263 * 108.65869 * 289.27882 * 9 7 6 11 11 N 1.45963 * 109.75085 * 80.84404 * 10 9 7 12 12 C 1.34781 * 118.41771 * 114.91988 * 11 10 9 13 13 O 1.21589 * 120.00123 * 5.40873 * 12 11 10 14 14 N 1.34781 * 119.99825 * 185.40467 * 12 11 10 15 15 C 1.46495 * 119.99570 * 175.03889 * 14 12 11 16 16 C 1.50706 * 109.46862 * 180.02562 * 15 14 12 17 17 O 1.21288 * 120.00093 * 359.97438 * 16 15 14 18 18 N 1.34780 * 119.99726 * 180.02562 * 16 15 14 19 19 C 1.37099 * 119.99566 * 179.97438 * 18 16 15 20 20 H 1.08001 * 119.99921 * 359.97438 * 19 18 16 21 21 C 1.38951 * 119.99953 * 179.97438 * 19 18 16 22 22 N 1.31405 * 119.99678 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99955 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47169 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47253 * 120.00155 * 23 21 19 26 26 H 1.48501 * 109.46644 * 239.99768 * 23 21 19 27 27 C 1.45968 * 123.16408 * 295.21277 * 11 10 9 28 28 C 1.51252 * 119.41042 * 180.02562 * 6 5 4 29 29 H 1.09001 * 109.47540 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47266 * 300.00450 * 1 2 3 31 31 H 1.09005 * 109.47160 * 60.00022 * 1 2 3 32 32 H 1.07996 * 120.01772 * 359.96816 * 4 3 2 33 33 H 1.08001 * 120.08236 * 179.97438 * 5 4 3 34 34 H 1.08000 * 120.14249 * 180.02562 * 8 7 6 35 35 H 1.08998 * 109.61000 * 169.52495 * 9 7 6 36 36 H 1.08997 * 109.60595 * 49.02780 * 9 7 6 37 37 H 1.08998 * 109.42754 * 320.76494 * 10 9 7 38 38 H 1.09000 * 109.38129 * 200.90228 * 10 9 7 39 39 H 0.97001 * 119.99791 * 355.04090 * 14 12 11 40 40 H 1.08997 * 109.47433 * 60.00456 * 15 14 12 41 41 H 1.09002 * 109.47730 * 300.00064 * 15 14 12 42 42 H 0.96994 * 120.00165 * 359.97438 * 18 16 15 43 43 H 0.97007 * 120.00260 * 179.97438 * 22 21 19 44 44 H 1.09000 * 109.42505 * 184.83044 * 27 11 10 45 45 H 1.09001 * 109.42364 * 304.66887 * 27 11 10 46 46 H 1.09000 * 109.60159 * 10.53507 * 28 6 5 47 47 H 1.09001 * 109.60418 * 131.02787 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2912 2.3752 -0.0005 5 6 1.9201 3.6053 -0.0011 6 6 3.3032 3.6718 -0.0016 7 6 4.0521 2.5209 -0.0021 8 6 3.4314 1.2846 -0.0013 9 6 5.5628 2.5942 -0.0033 10 6 6.0282 3.0968 -1.3743 11 7 5.9083 4.5503 -1.4337 12 6 7.0338 5.2825 -1.5509 13 8 8.1057 4.7294 -1.7037 14 7 6.9709 6.6278 -1.4990 15 6 8.2032 7.4198 -1.5171 16 6 7.8593 8.8855 -1.4494 17 8 6.6990 9.2342 -1.3921 18 7 8.8411 9.8089 -1.4535 19 6 8.5281 11.1423 -1.3923 20 1 7.4950 11.4527 -1.3414 21 6 9.5403 12.0944 -1.3960 22 7 10.7973 11.7166 -1.4575 23 14 9.1139 13.9111 -1.3120 24 1 7.6389 14.0711 -1.2498 25 1 9.7287 14.5083 -0.0994 26 1 9.6354 14.5982 -2.5209 27 6 4.6287 5.2493 -1.3658 28 6 3.9818 5.0235 -0.0016 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 0.2127 2.3199 -0.0015 33 1 1.3344 4.5127 -0.0019 34 1 4.0228 0.3809 -0.0013 35 1 5.9772 1.6035 0.1831 36 1 5.8960 3.2844 0.7717 37 1 5.4102 2.6501 -2.1532 38 1 7.0689 2.8123 -1.5297 39 1 6.1098 7.0715 -1.4497 40 1 8.7519 7.2172 -2.4369 41 1 8.8201 7.1517 -0.6594 42 1 9.7689 9.5301 -1.4996 43 1 11.5040 12.3811 -1.4605 44 1 4.7904 6.3168 -1.5160 45 1 3.9670 4.8705 -2.1448 46 1 3.2437 5.8032 0.1866 47 1 4.7486 5.0478 0.7727 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000377065271.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:37 Heat of formation + Delta-G solvation = -88.675159 kcal Electronic energy + Delta-G solvation = -29842.948162 eV Core-core repulsion = 25604.423044 eV Total energy + Delta-G solvation = -4238.525118 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.89327 -41.05207 -40.12323 -39.18000 -36.90588 -36.28346 -35.49073 -34.11151 -33.35963 -32.98452 -31.04755 -29.41864 -28.15568 -27.88540 -26.37960 -25.01540 -24.13479 -23.12626 -21.42482 -21.14081 -20.85186 -20.12700 -19.40962 -18.68222 -17.61080 -17.42903 -17.29203 -16.91667 -16.63416 -16.54321 -16.36612 -15.98792 -15.90219 -15.36526 -15.34267 -15.24210 -14.95196 -14.60652 -14.31814 -14.15128 -13.79488 -13.73198 -13.53513 -13.44850 -13.10747 -13.00650 -12.90028 -12.79146 -12.44507 -12.42585 -12.29375 -12.10146 -11.86151 -11.81115 -11.61079 -11.56297 -11.19704 -10.53437 -10.31867 -10.07896 -9.85751 -9.56209 -8.96771 -8.49408 -5.99380 0.36357 0.45801 1.36400 1.43723 1.54295 1.60479 1.91114 2.08214 2.29156 2.38903 2.73452 2.79883 3.15803 3.18028 3.64727 3.77588 3.92117 4.11842 4.16598 4.18408 4.23479 4.25188 4.30710 4.36810 4.39362 4.40232 4.45769 4.48038 4.48938 4.59055 4.73194 4.77390 4.85458 4.86744 5.01070 5.13449 5.17775 5.32853 5.36030 5.40769 5.44527 5.53892 5.75928 5.83774 5.85860 5.94270 6.47523 6.49722 6.88888 7.05295 7.42853 7.50665 7.96180 8.67695 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.025473 B = 0.001874 C = 0.001768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.945168 B =14939.145052 C =15834.648583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.338 6.338 3 C 0.112 3.888 4 C -0.212 4.212 5 C -0.075 4.075 6 C -0.125 4.125 7 C -0.045 4.045 8 C -0.159 4.159 9 C -0.090 4.090 10 C 0.135 3.865 11 N -0.618 5.618 12 C 0.700 3.300 13 O -0.627 6.627 14 N -0.726 5.726 15 C 0.140 3.860 16 C 0.435 3.565 17 O -0.623 6.623 18 N -0.559 5.559 19 C -0.336 4.336 20 H 0.087 0.913 21 C -0.011 4.011 22 N -0.916 5.916 23 Si 0.997 3.003 24 H -0.269 1.269 25 H -0.272 1.272 26 H -0.272 1.272 27 C 0.114 3.886 28 C -0.088 4.088 29 H 0.116 0.884 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.146 0.854 33 H 0.146 0.854 34 H 0.136 0.864 35 H 0.101 0.899 36 H 0.073 0.927 37 H 0.079 0.921 38 H 0.090 0.910 39 H 0.409 0.591 40 H 0.090 0.910 41 H 0.092 0.908 42 H 0.399 0.601 43 H 0.279 0.721 44 H 0.083 0.917 45 H 0.086 0.914 46 H 0.102 0.898 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.085 -21.405 3.172 28.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.252 6.252 3 C 0.066 3.934 4 C -0.231 4.231 5 C -0.093 4.093 6 C -0.125 4.125 7 C -0.045 4.045 8 C -0.178 4.178 9 C -0.129 4.129 10 C 0.012 3.988 11 N -0.354 5.354 12 C 0.402 3.598 13 O -0.509 6.509 14 N -0.387 5.387 15 C 0.011 3.989 16 C 0.222 3.778 17 O -0.511 6.511 18 N -0.195 5.195 19 C -0.465 4.465 20 H 0.105 0.895 21 C -0.212 4.212 22 N -0.556 5.556 23 Si 0.820 3.180 24 H -0.194 1.194 25 H -0.197 1.197 26 H -0.197 1.197 27 C -0.009 4.009 28 C -0.127 4.127 29 H 0.135 0.865 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.164 0.836 33 H 0.164 0.836 34 H 0.154 0.846 35 H 0.120 0.880 36 H 0.092 0.908 37 H 0.097 0.903 38 H 0.108 0.892 39 H 0.251 0.749 40 H 0.108 0.892 41 H 0.110 0.890 42 H 0.233 0.767 43 H 0.089 0.911 44 H 0.101 0.899 45 H 0.105 0.895 46 H 0.120 0.880 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -18.849 -21.652 3.100 28.874 hybrid contribution -0.038 1.064 0.047 1.066 sum -18.887 -20.588 3.147 28.115 Atomic orbital electron populations 1.23311 0.76592 1.05426 1.02170 1.86039 1.23347 1.27036 1.88800 1.19204 0.92524 0.84730 0.96895 1.21463 1.01012 0.91937 1.08644 1.21192 0.93494 0.98000 0.96639 1.19651 0.93852 0.94696 1.04302 1.19497 0.95662 0.91901 0.97486 1.20506 0.91737 0.98178 1.07376 1.21182 0.90783 1.03351 0.97544 1.21339 1.03142 0.77350 0.96926 1.46952 1.04800 1.06757 1.76891 1.16030 0.84646 0.81408 0.77759 1.90859 1.29172 1.71569 1.59253 1.45007 1.10275 1.04368 1.79027 1.20599 0.87188 0.87143 1.03973 1.20388 0.85797 0.88145 0.83487 1.90457 1.20470 1.82250 1.57917 1.41834 1.08552 1.05769 1.63312 1.19783 0.94706 0.81959 1.50057 0.89470 1.26123 0.94414 1.04754 0.95868 1.69688 0.99706 1.36889 1.49335 0.84809 0.78467 0.76460 0.78226 1.19365 1.19713 1.19747 1.21519 0.84094 0.96944 0.98358 1.20999 1.00186 0.94552 0.96917 0.86545 0.91816 0.91801 0.83601 0.83594 0.84609 0.88047 0.90846 0.90268 0.89184 0.74894 0.89177 0.89038 0.76727 0.91125 0.89883 0.89546 0.87988 0.91229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 113.37 1.11 1.28 16 2 O -0.34 -5.70 10.50 -92.46 -0.97 -6.67 16 3 C 0.11 1.99 6.69 22.51 0.15 2.14 16 4 C -0.21 -3.18 9.04 22.37 0.20 -2.98 16 5 C -0.08 -1.14 9.67 22.30 0.22 -0.93 16 6 C -0.12 -2.20 5.05 -19.85 -0.10 -2.31 16 7 C -0.05 -0.83 5.04 -19.89 -0.10 -0.93 16 8 C -0.16 -2.91 9.61 22.41 0.22 -2.70 16 9 C -0.09 -1.65 5.48 30.11 0.17 -1.48 16 10 C 0.14 2.89 6.07 86.57 0.53 3.41 16 11 N -0.62 -15.35 2.76 -842.66 -2.32 -17.67 16 12 C 0.70 22.82 8.20 179.05 1.47 24.29 16 13 O -0.63 -24.28 15.53 -4.00 -0.06 -24.34 16 14 N -0.73 -24.43 5.41 -482.29 -2.61 -27.04 16 15 C 0.14 5.17 6.16 85.64 0.53 5.70 16 16 C 0.43 19.95 7.85 87.66 0.69 20.64 16 17 O -0.62 -31.67 15.24 -3.05 -0.05 -31.71 16 18 N -0.56 -27.95 5.29 -306.97 -1.62 -29.57 16 19 C -0.34 -18.37 9.68 84.04 0.81 -17.56 16 20 H 0.09 5.01 7.16 -2.91 -0.02 4.99 16 21 C -0.01 -0.57 5.50 84.93 0.47 -0.10 16 22 N -0.92 -48.53 13.05 21.66 0.28 -48.25 16 23 Si 1.00 41.52 29.55 68.60 2.03 43.55 16 24 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 25 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 26 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 27 C 0.11 2.29 5.99 86.37 0.52 2.81 16 28 C -0.09 -1.57 5.46 29.91 0.16 -1.40 16 29 H 0.12 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.06 0.42 7.66 -2.38 -0.02 0.41 16 31 H 0.06 0.43 7.66 -2.38 -0.02 0.41 16 32 H 0.15 1.48 6.30 -2.91 -0.02 1.47 16 33 H 0.15 1.58 7.96 -2.91 -0.02 1.55 16 34 H 0.14 2.21 7.96 -2.91 -0.02 2.18 16 35 H 0.10 1.49 7.90 -2.39 -0.02 1.47 16 36 H 0.07 1.52 7.21 -2.39 -0.02 1.50 16 37 H 0.08 1.51 7.94 -2.39 -0.02 1.49 16 38 H 0.09 2.21 6.74 -2.39 -0.02 2.19 16 39 H 0.41 13.37 4.70 -92.71 -0.44 12.94 16 40 H 0.09 3.24 8.14 -2.39 -0.02 3.22 16 41 H 0.09 3.23 8.14 -2.39 -0.02 3.21 16 42 H 0.40 19.22 7.90 -92.71 -0.73 18.49 16 43 H 0.28 13.81 8.31 -92.70 -0.77 13.04 16 44 H 0.08 1.81 5.31 -2.39 -0.01 1.80 16 45 H 0.09 1.54 7.94 -2.39 -0.02 1.52 16 46 H 0.10 1.46 7.90 -2.39 -0.02 1.44 16 47 H 0.07 1.43 7.21 -2.39 -0.02 1.41 16 Total: -1.00 -69.04 382.13 1.57 -67.47 By element: Atomic # 1 Polarization: 44.48 SS G_CDS: -0.14 Total: 44.34 kcal Atomic # 6 Polarization: 22.86 SS G_CDS: 7.03 Total: 29.89 kcal Atomic # 7 Polarization: -116.26 SS G_CDS: -6.27 Total: -122.53 kcal Atomic # 8 Polarization: -61.65 SS G_CDS: -1.08 Total: -62.73 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 2.03 Total: 43.55 kcal Total: -69.04 1.57 -67.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000377065271.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.206 kcal (2) G-P(sol) polarization free energy of solvation -69.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds