Wall clock time and date at job start Wed Apr 1 2020 04:07:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35967 * 119.25324 * 2 1 4 4 C 1.38383 * 119.26890 * 180.02562 * 3 2 1 5 5 C 1.46522 * 120.97724 * 180.02562 * 4 3 2 6 6 C 1.35449 * 119.99869 * 118.44318 * 5 4 3 7 7 C 1.41448 * 120.00088 * 354.42452 * 6 5 4 8 8 O 1.21819 * 119.99847 * 355.00511 * 7 6 5 9 9 N 1.34778 * 120.00086 * 174.99576 * 7 6 5 10 10 C 1.36801 * 119.99982 * 174.81927 * 9 7 6 11 11 H 1.07999 * 120.00390 * 359.58825 * 10 9 7 12 12 C 1.39045 * 120.00252 * 179.31173 * 10 9 7 13 13 N 1.31374 * 120.00443 * 137.72996 * 12 10 9 14 14 Si 1.86806 * 119.99819 * 317.73563 * 12 10 9 15 15 H 1.48499 * 109.47335 * 96.17113 * 14 12 10 16 16 H 1.48500 * 109.46772 * 216.17377 * 14 12 10 17 17 H 1.48497 * 109.46834 * 336.16812 * 14 12 10 18 18 C 1.46499 * 119.99955 * 354.82624 * 9 7 6 19 19 C 1.54264 * 110.03295 * 58.26696 * 18 9 7 20 20 C 1.54966 * 104.16116 * 217.13714 * 19 18 9 21 21 C 1.54883 * 102.77760 * 37.88620 * 20 19 18 22 22 C 1.53869 * 110.03205 * 301.05255 * 18 9 7 23 23 C 1.47352 * 118.04271 * 0.26921 * 4 3 2 24 24 O 1.21670 * 120.74176 * 179.70756 * 23 4 3 25 25 N 1.34972 * 118.51289 * 359.44389 * 23 4 3 26 26 C 1.46497 * 119.75730 * 180.24155 * 25 23 4 27 27 C 1.34223 * 119.24830 * 180.02562 * 2 1 3 28 28 O 1.21572 * 118.90417 * 359.97438 * 27 2 1 29 29 H 1.08998 * 109.46716 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.46954 * 119.99899 * 1 2 3 31 31 H 1.08991 * 109.47406 * 240.00314 * 1 2 3 32 32 H 1.08006 * 120.36351 * 0.02562 * 3 2 1 33 33 H 1.07995 * 120.00350 * 298.44787 * 5 4 3 34 34 H 1.08001 * 120.00073 * 174.42345 * 6 5 4 35 35 H 0.96995 * 120.00335 * 180.02562 * 13 12 10 36 36 H 1.08996 * 110.01574 * 179.65742 * 18 9 7 37 37 H 1.09004 * 110.48772 * 335.78707 * 19 18 9 38 38 H 1.09005 * 110.48694 * 98.42346 * 19 18 9 39 39 H 1.08998 * 110.72041 * 279.57477 * 20 19 18 40 40 H 1.09000 * 110.92306 * 156.29816 * 20 19 18 41 41 H 1.08994 * 110.49032 * 203.40431 * 21 20 19 42 42 H 1.09005 * 110.59579 * 80.81423 * 21 20 19 43 43 H 1.09008 * 110.03010 * 238.56940 * 22 18 9 44 44 H 1.09004 * 110.03097 * 359.94613 * 22 18 9 45 45 H 1.09009 * 109.47398 * 270.32387 * 26 25 23 46 46 H 1.08996 * 109.47425 * 30.32578 * 26 25 23 47 47 H 1.09007 * 109.47156 * 150.32626 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1294 1.1863 0.0000 4 6 3.5132 1.1866 -0.0005 5 6 4.2671 2.4431 0.0000 6 6 5.0950 2.7357 1.0313 7 6 5.1435 1.8872 2.1620 8 8 4.3767 0.9446 2.2495 9 7 6.0383 2.1213 3.1423 10 6 6.0158 1.3669 4.2833 11 1 5.2769 0.5882 4.4014 12 6 6.9479 1.5989 5.2887 13 7 6.5712 1.5959 6.5472 14 14 8.7359 1.9151 4.8497 15 1 8.9834 3.3786 4.8051 16 1 9.6141 1.2955 5.8744 17 1 9.0315 1.3223 3.5207 18 6 7.0348 3.1837 2.9861 19 6 6.3320 4.5382 2.7597 20 6 7.2379 5.2690 1.7365 21 6 7.6857 4.1230 0.7957 22 6 7.8954 2.9198 1.7382 23 6 4.2063 -0.1137 -0.0072 24 8 5.4217 -0.1706 -0.0133 25 7 3.4628 -1.2401 -0.0009 26 6 4.1237 -2.5476 -0.0020 27 6 2.1208 -1.1711 -0.0005 28 8 1.4793 -2.2038 -0.0005 29 1 -0.3633 1.0277 -0.0005 30 1 -0.3633 -0.5138 -0.8900 31 1 -0.3634 -0.5137 0.8899 32 1 1.5831 2.1180 0.0004 33 1 4.1625 3.1359 -0.8218 34 1 5.7180 3.6169 0.9903 35 1 7.2214 1.7581 7.2485 36 1 7.6675 3.2349 3.8721 37 1 5.3350 4.3863 2.3460 38 1 6.2776 5.1004 3.6920 39 1 8.0973 5.7182 2.2342 40 1 6.6745 6.0226 1.1864 41 1 8.6185 4.3827 0.2953 42 1 6.9092 3.9028 0.0631 43 1 8.9460 2.8438 2.0185 44 1 7.5722 2.0007 1.2493 45 1 4.2873 -2.8713 -1.0299 46 1 5.0821 -2.4707 0.5115 47 1 3.4935 -3.2737 0.5117 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491883315.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:07:06 Heat of formation + Delta-G solvation = 10.606409 kcal Electronic energy + Delta-G solvation = -32925.628915 eV Core-core repulsion = 28691.408969 eV Total energy + Delta-G solvation = -4234.219946 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -41.76163 -40.08120 -38.52380 -37.16389 -36.67588 -34.80934 -34.56569 -33.00920 -31.95686 -30.11859 -28.44235 -27.98903 -27.38692 -26.67640 -25.60661 -23.50494 -23.10999 -21.54095 -20.63807 -20.44964 -18.81911 -18.35259 -17.39492 -17.08273 -16.80561 -16.54308 -16.25305 -15.49716 -15.24755 -14.86876 -14.55652 -14.50936 -14.24980 -13.91865 -13.76221 -13.41609 -13.28130 -13.03527 -12.86318 -12.76478 -12.60738 -12.52780 -12.31076 -12.14243 -11.76706 -11.42940 -11.37738 -11.18117 -11.05622 -10.90518 -10.80509 -10.58535 -10.38670 -10.24440 -10.10231 -9.76272 -9.47932 -9.37655 -9.17499 -8.88789 -8.44083 -8.04113 -7.43116 -6.66159 -3.70340 1.34622 1.89487 2.25215 2.45574 2.94520 3.18455 3.23835 3.43124 3.92646 3.99863 4.21513 4.55219 4.63116 4.76044 4.77698 4.90526 5.05930 5.13195 5.19850 5.24172 5.46149 5.52507 5.53910 5.56956 5.59445 5.68799 5.74226 5.80279 5.84664 5.86038 5.88016 5.92675 5.99230 6.08040 6.12493 6.29460 6.33734 6.42192 6.50817 6.54369 6.57630 6.69507 6.84963 6.91972 7.41563 7.61694 7.92054 8.19318 8.40311 8.40952 8.96840 9.33893 9.92357 10.40731 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013613 B = 0.004245 C = 0.003816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2056.347969 B = 6594.020248 C = 7335.102872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.530 5.530 3 C 0.114 3.886 4 C -0.149 4.149 5 C -0.079 4.079 6 C -0.169 4.169 7 C 0.465 3.535 8 O -0.583 6.583 9 N -0.426 5.426 10 C -0.318 4.318 11 H 0.119 0.881 12 C 0.062 3.938 13 N -0.813 5.813 14 Si 0.850 3.150 15 H -0.273 1.273 16 H -0.288 1.288 17 H -0.254 1.254 18 C 0.106 3.894 19 C -0.144 4.144 20 C -0.127 4.127 21 C -0.133 4.133 22 C -0.145 4.145 23 C 0.576 3.424 24 O -0.501 6.501 25 N -0.552 5.552 26 C 0.086 3.914 27 C 0.696 3.304 28 O -0.563 6.563 29 H 0.089 0.911 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.170 0.830 33 H 0.128 0.872 34 H 0.150 0.850 35 H 0.277 0.723 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.069 0.931 41 H 0.065 0.935 42 H 0.078 0.922 43 H 0.064 0.936 44 H 0.082 0.918 45 H 0.065 0.935 46 H 0.091 0.909 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.488 6.288 -13.972 16.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.250 5.250 3 C -0.007 4.007 4 C -0.159 4.159 5 C -0.102 4.102 6 C -0.190 4.190 7 C 0.260 3.740 8 O -0.471 6.471 9 N -0.141 5.141 10 C -0.444 4.444 11 H 0.137 0.863 12 C -0.147 4.147 13 N -0.446 5.446 14 Si 0.677 3.323 15 H -0.201 1.201 16 H -0.216 1.216 17 H -0.178 1.178 18 C 0.001 3.999 19 C -0.182 4.182 20 C -0.164 4.164 21 C -0.170 4.170 22 C -0.183 4.183 23 C 0.370 3.630 24 O -0.373 6.373 25 N -0.296 5.296 26 C -0.056 4.056 27 C 0.400 3.600 28 O -0.439 6.439 29 H 0.108 0.892 30 H 0.093 0.907 31 H 0.095 0.905 32 H 0.187 0.813 33 H 0.146 0.854 34 H 0.167 0.833 35 H 0.087 0.913 36 H 0.109 0.891 37 H 0.105 0.895 38 H 0.089 0.911 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.084 0.916 42 H 0.096 0.904 43 H 0.083 0.917 44 H 0.101 0.899 45 H 0.084 0.916 46 H 0.109 0.891 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -5.537 5.098 -13.623 15.564 hybrid contribution 1.293 0.208 0.338 1.352 sum -4.245 5.306 -13.286 14.922 Atomic orbital electron populations 1.21919 0.75544 1.03721 1.03962 1.43936 1.08818 1.04318 1.67908 1.22370 0.92215 0.88932 0.97138 1.20311 0.91233 0.93377 1.10957 1.21252 0.97789 0.93261 0.97878 1.23392 0.99148 1.01519 0.94914 1.16329 0.85530 0.88016 0.84103 1.90587 1.44657 1.32965 1.78925 1.43948 1.26131 1.27774 1.16282 1.19204 1.17117 1.17997 0.90058 0.86322 1.25099 0.99480 0.95873 0.94267 1.70089 1.35241 1.38943 1.00332 0.87556 0.86901 0.77653 0.80193 1.20133 1.21569 1.17784 1.22054 0.91174 0.88047 0.98617 1.23161 0.99855 0.95525 0.99689 1.22543 0.99513 0.97299 0.97083 1.22596 1.01395 0.95062 0.97947 1.22856 1.00010 0.99556 0.95924 1.18367 0.87222 0.83136 0.74238 1.90770 1.12844 1.86375 1.47345 1.46104 1.05674 1.10437 1.67372 1.21780 0.99097 0.81855 1.02836 1.15598 0.81921 0.83864 0.78636 1.90934 1.65372 1.31651 1.55943 0.89229 0.90675 0.90525 0.81286 0.85441 0.83326 0.91301 0.89140 0.89488 0.91104 0.91377 0.91221 0.91595 0.90351 0.91749 0.89908 0.91589 0.89056 0.89495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.86 9.94 59.85 0.59 1.45 16 2 N -0.53 -7.50 2.98 -128.40 -0.38 -7.88 16 3 C 0.11 1.56 10.20 -15.67 -0.16 1.40 16 4 C -0.15 -2.59 3.95 -102.80 -0.41 -2.99 16 5 C -0.08 -1.25 9.54 -37.24 -0.36 -1.61 16 6 C -0.17 -3.12 6.03 -39.36 -0.24 -3.36 16 7 C 0.47 11.11 5.86 -15.04 -0.09 11.02 16 8 O -0.58 -15.64 11.91 -10.64 -0.13 -15.76 16 9 N -0.43 -10.56 2.55 -109.81 -0.28 -10.84 16 10 C -0.32 -9.05 9.73 -15.04 -0.15 -9.19 16 11 H 0.12 3.82 7.39 -52.49 -0.39 3.43 16 12 C 0.06 1.70 5.16 -17.45 -0.09 1.61 16 13 N -0.81 -22.74 13.95 55.50 0.77 -21.96 16 14 Si 0.85 19.82 24.04 -169.99 -4.09 15.74 16 15 H -0.27 -5.92 6.55 56.52 0.37 -5.55 16 16 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 17 H -0.25 -5.92 6.16 56.52 0.35 -5.58 16 18 C 0.11 2.20 2.15 -66.82 -0.14 2.05 16 19 C -0.14 -2.41 5.84 -25.03 -0.15 -2.56 16 20 C -0.13 -1.63 6.68 -24.70 -0.17 -1.79 16 21 C -0.13 -1.82 6.10 -25.08 -0.15 -1.97 16 22 C -0.15 -2.66 4.89 -25.62 -0.13 -2.79 16 23 C 0.58 11.76 5.63 -12.46 -0.07 11.69 16 24 O -0.50 -11.61 15.36 -10.51 -0.16 -11.77 16 25 N -0.55 -10.35 2.96 -129.58 -0.38 -10.73 16 26 C 0.09 1.39 10.11 59.85 0.60 2.00 16 27 C 0.70 12.23 8.09 -87.77 -0.71 11.52 16 28 O -0.56 -10.50 15.62 5.30 0.08 -10.42 16 29 H 0.09 0.52 7.72 -51.93 -0.40 0.12 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.17 1.52 7.84 -52.48 -0.41 1.11 16 33 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 34 H 0.15 2.37 1.67 -52.49 -0.09 2.28 16 35 H 0.28 7.08 8.31 -40.82 -0.34 6.74 16 36 H 0.09 2.03 2.22 -51.93 -0.12 1.91 16 37 H 0.09 1.45 5.17 -51.93 -0.27 1.18 16 38 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 39 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.08 1.01 6.00 -51.93 -0.31 0.70 16 43 H 0.06 1.15 6.91 -51.92 -0.36 0.79 16 44 H 0.08 1.72 6.97 -51.93 -0.36 1.36 16 45 H 0.07 0.90 8.14 -51.92 -0.42 0.47 16 46 H 0.09 1.58 7.45 -51.93 -0.39 1.19 16 47 H 0.09 1.34 7.35 -51.93 -0.38 0.96 16 LS Contribution 359.14 15.07 5.41 5.41 Total: -1.00 -36.57 359.14 -7.02 -43.60 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: -6.07 Total: 8.15 kcal Atomic # 6 Polarization: 18.28 SS G_CDS: -1.80 Total: 16.48 kcal Atomic # 7 Polarization: -51.14 SS G_CDS: -0.27 Total: -51.41 kcal Atomic # 8 Polarization: -37.75 SS G_CDS: -0.21 Total: -37.96 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -4.09 Total: 15.74 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -36.57 -7.02 -43.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491883315.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.202 kcal (2) G-P(sol) polarization free energy of solvation -36.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds