Wall clock time and date at job start Wed Apr 1 2020 04:07:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35967 * 119.25324 * 2 1 4 4 C 1.38383 * 119.26890 * 180.02562 * 3 2 1 5 5 C 1.46522 * 120.97724 * 180.02562 * 4 3 2 6 6 C 1.35449 * 119.99869 * 118.44318 * 5 4 3 7 7 C 1.41448 * 120.00088 * 354.42452 * 6 5 4 8 8 O 1.21819 * 119.99847 * 355.00511 * 7 6 5 9 9 N 1.34778 * 120.00086 * 174.99576 * 7 6 5 10 10 C 1.36801 * 119.99982 * 174.81927 * 9 7 6 11 11 H 1.07999 * 120.00390 * 359.58825 * 10 9 7 12 12 C 1.39045 * 120.00252 * 179.31173 * 10 9 7 13 13 N 1.31374 * 120.00443 * 137.72996 * 12 10 9 14 14 Si 1.86806 * 119.99819 * 317.73563 * 12 10 9 15 15 H 1.48499 * 109.47335 * 96.17113 * 14 12 10 16 16 H 1.48500 * 109.46772 * 216.17377 * 14 12 10 17 17 H 1.48497 * 109.46834 * 336.16812 * 14 12 10 18 18 C 1.46499 * 119.99955 * 354.82624 * 9 7 6 19 19 C 1.54264 * 110.03295 * 58.26696 * 18 9 7 20 20 C 1.54966 * 104.16116 * 217.13714 * 19 18 9 21 21 C 1.54883 * 102.77760 * 37.88620 * 20 19 18 22 22 C 1.53869 * 110.03205 * 301.05255 * 18 9 7 23 23 C 1.47352 * 118.04271 * 0.26921 * 4 3 2 24 24 O 1.21670 * 120.74176 * 179.70756 * 23 4 3 25 25 N 1.34972 * 118.51289 * 359.44389 * 23 4 3 26 26 C 1.46497 * 119.75730 * 180.24155 * 25 23 4 27 27 C 1.34223 * 119.24830 * 180.02562 * 2 1 3 28 28 O 1.21572 * 118.90417 * 359.97438 * 27 2 1 29 29 H 1.08998 * 109.46716 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.46954 * 119.99899 * 1 2 3 31 31 H 1.08991 * 109.47406 * 240.00314 * 1 2 3 32 32 H 1.08006 * 120.36351 * 0.02562 * 3 2 1 33 33 H 1.07995 * 120.00350 * 298.44787 * 5 4 3 34 34 H 1.08001 * 120.00073 * 174.42345 * 6 5 4 35 35 H 0.96995 * 120.00335 * 180.02562 * 13 12 10 36 36 H 1.08996 * 110.01574 * 179.65742 * 18 9 7 37 37 H 1.09004 * 110.48772 * 335.78707 * 19 18 9 38 38 H 1.09005 * 110.48694 * 98.42346 * 19 18 9 39 39 H 1.08998 * 110.72041 * 279.57477 * 20 19 18 40 40 H 1.09000 * 110.92306 * 156.29816 * 20 19 18 41 41 H 1.08994 * 110.49032 * 203.40431 * 21 20 19 42 42 H 1.09005 * 110.59579 * 80.81423 * 21 20 19 43 43 H 1.09008 * 110.03010 * 238.56940 * 22 18 9 44 44 H 1.09004 * 110.03097 * 359.94613 * 22 18 9 45 45 H 1.09009 * 109.47398 * 270.32387 * 26 25 23 46 46 H 1.08996 * 109.47425 * 30.32578 * 26 25 23 47 47 H 1.09007 * 109.47156 * 150.32626 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1294 1.1863 0.0000 4 6 3.5132 1.1866 -0.0005 5 6 4.2671 2.4431 0.0000 6 6 5.0950 2.7357 1.0313 7 6 5.1435 1.8872 2.1620 8 8 4.3767 0.9446 2.2495 9 7 6.0383 2.1213 3.1423 10 6 6.0158 1.3669 4.2833 11 1 5.2769 0.5882 4.4014 12 6 6.9479 1.5989 5.2887 13 7 6.5712 1.5959 6.5472 14 14 8.7359 1.9151 4.8497 15 1 8.9834 3.3786 4.8051 16 1 9.6141 1.2955 5.8744 17 1 9.0315 1.3223 3.5207 18 6 7.0348 3.1837 2.9861 19 6 6.3320 4.5382 2.7597 20 6 7.2379 5.2690 1.7365 21 6 7.6857 4.1230 0.7957 22 6 7.8954 2.9198 1.7382 23 6 4.2063 -0.1137 -0.0072 24 8 5.4217 -0.1706 -0.0133 25 7 3.4628 -1.2401 -0.0009 26 6 4.1237 -2.5476 -0.0020 27 6 2.1208 -1.1711 -0.0005 28 8 1.4793 -2.2038 -0.0005 29 1 -0.3633 1.0277 -0.0005 30 1 -0.3633 -0.5138 -0.8900 31 1 -0.3634 -0.5137 0.8899 32 1 1.5831 2.1180 0.0004 33 1 4.1625 3.1359 -0.8218 34 1 5.7180 3.6169 0.9903 35 1 7.2214 1.7581 7.2485 36 1 7.6675 3.2349 3.8721 37 1 5.3350 4.3863 2.3460 38 1 6.2776 5.1004 3.6920 39 1 8.0973 5.7182 2.2342 40 1 6.6745 6.0226 1.1864 41 1 8.6185 4.3827 0.2953 42 1 6.9092 3.9028 0.0631 43 1 8.9460 2.8438 2.0185 44 1 7.5722 2.0007 1.2493 45 1 4.2873 -2.8713 -1.0299 46 1 5.0821 -2.4707 0.5115 47 1 3.4935 -3.2737 0.5117 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491883315.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:07:05 Heat of formation + Delta-G solvation = -15.761751 kcal Electronic energy + Delta-G solvation = -32926.772324 eV Core-core repulsion = 28691.408969 eV Total energy + Delta-G solvation = -4235.363355 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -43.12030 -41.62998 -39.98270 -38.58684 -38.13602 -36.34971 -36.16650 -34.53232 -33.81939 -31.40377 -29.68137 -29.30774 -28.79501 -27.89350 -27.25092 -24.94099 -24.50387 -23.04465 -21.95038 -21.76095 -20.24282 -19.77167 -19.14409 -18.46000 -18.20271 -17.96857 -17.89052 -17.06448 -16.54815 -16.32915 -15.92001 -15.85082 -15.66985 -15.52975 -15.43054 -14.86095 -14.64765 -14.42567 -14.32574 -14.25389 -13.98788 -13.87985 -13.56633 -13.31888 -13.21178 -13.06715 -12.81947 -12.63336 -12.27000 -12.17103 -12.13636 -11.98683 -11.92904 -11.83031 -11.39605 -11.29604 -11.11354 -10.91550 -10.83538 -10.40185 -10.10220 -9.93468 -8.80091 -8.69391 -5.82399 0.07921 0.51135 0.98233 1.05808 1.10007 1.27197 1.36676 2.03802 2.11349 2.39898 2.53958 2.94788 3.09527 3.46576 3.62440 3.75056 3.79501 3.92550 4.14962 4.20802 4.27874 4.28915 4.36081 4.39508 4.44308 4.47852 4.50666 4.55546 4.58560 4.58602 4.69477 4.81811 4.82843 4.83421 4.96955 5.12002 5.17709 5.23058 5.27608 5.31775 5.35812 5.43004 5.48490 5.51110 5.71871 6.02185 6.25964 6.48746 6.53078 6.96126 7.01010 7.44257 8.08075 8.44107 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013613 B = 0.004245 C = 0.003816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2056.347969 B = 6594.020248 C = 7335.102872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.525 5.525 3 C 0.164 3.836 4 C -0.216 4.216 5 C -0.020 4.020 6 C -0.212 4.212 7 C 0.473 3.527 8 O -0.625 6.625 9 N -0.451 5.451 10 C -0.354 4.354 11 H 0.053 0.947 12 C 0.024 3.976 13 N -0.865 5.865 14 Si 0.922 3.078 15 H -0.239 1.239 16 H -0.289 1.289 17 H -0.261 1.261 18 C 0.095 3.905 19 C -0.145 4.145 20 C -0.112 4.112 21 C -0.124 4.124 22 C -0.145 4.145 23 C 0.562 3.438 24 O -0.550 6.550 25 N -0.564 5.564 26 C 0.083 3.917 27 C 0.684 3.316 28 O -0.580 6.580 29 H 0.140 0.860 30 H 0.087 0.913 31 H 0.066 0.934 32 H 0.234 0.766 33 H 0.192 0.808 34 H 0.179 0.821 35 H 0.283 0.717 36 H 0.069 0.931 37 H 0.089 0.911 38 H 0.066 0.934 39 H 0.078 0.922 40 H 0.110 0.890 41 H 0.094 0.906 42 H 0.091 0.909 43 H 0.064 0.936 44 H 0.047 0.953 45 H 0.092 0.908 46 H 0.069 0.931 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.576 10.579 -17.851 21.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.243 5.243 3 C 0.041 3.959 4 C -0.226 4.226 5 C -0.042 4.042 6 C -0.232 4.232 7 C 0.269 3.731 8 O -0.515 6.515 9 N -0.168 5.168 10 C -0.481 4.481 11 H 0.071 0.929 12 C -0.182 4.182 13 N -0.500 5.500 14 Si 0.747 3.253 15 H -0.165 1.165 16 H -0.217 1.217 17 H -0.186 1.186 18 C -0.009 4.009 19 C -0.183 4.183 20 C -0.149 4.149 21 C -0.161 4.161 22 C -0.184 4.184 23 C 0.359 3.641 24 O -0.427 6.427 25 N -0.306 5.306 26 C -0.058 4.058 27 C 0.387 3.613 28 O -0.457 6.457 29 H 0.158 0.842 30 H 0.106 0.894 31 H 0.085 0.915 32 H 0.250 0.750 33 H 0.209 0.791 34 H 0.196 0.804 35 H 0.093 0.907 36 H 0.086 0.914 37 H 0.107 0.893 38 H 0.085 0.915 39 H 0.097 0.903 40 H 0.128 0.872 41 H 0.113 0.887 42 H 0.109 0.891 43 H 0.083 0.917 44 H 0.066 0.934 45 H 0.110 0.890 46 H 0.088 0.912 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -6.664 9.409 -17.520 20.973 hybrid contribution 1.203 -1.355 1.320 2.241 sum -5.461 8.054 -16.200 18.898 Atomic orbital electron populations 1.22380 0.72297 1.07192 1.04148 1.44364 1.10760 1.03513 1.65660 1.23249 0.91267 0.90474 0.90865 1.20567 0.93165 0.92593 1.16231 1.22058 0.92912 0.92108 0.97090 1.23351 1.03027 1.02672 0.94150 1.17391 0.83474 0.87392 0.84854 1.90552 1.45880 1.34766 1.80282 1.43962 1.28086 1.29085 1.15667 1.18653 1.17541 1.18811 0.93065 0.92909 1.25737 1.03008 0.95758 0.93692 1.70141 1.36685 1.41754 1.01431 0.86405 0.80524 0.79414 0.78965 1.16516 1.21695 1.18598 1.22333 0.90904 0.88961 0.98665 1.23167 1.00592 0.93429 1.01097 1.22557 0.99389 0.97220 0.95767 1.22605 1.03419 0.92777 0.97269 1.22820 0.99216 1.00477 0.95878 1.19048 0.87076 0.84535 0.73466 1.90731 1.14702 1.87106 1.50122 1.46327 1.06541 1.10835 1.66918 1.21831 0.98046 0.81652 1.04273 1.15918 0.81489 0.85047 0.78817 1.90916 1.65478 1.32590 1.56764 0.84157 0.89445 0.91516 0.74981 0.79128 0.80445 0.90746 0.91373 0.89307 0.91523 0.90305 0.87186 0.88713 0.89103 0.91722 0.93401 0.88959 0.91227 0.89208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.16 9.94 127.77 1.27 2.43 16 2 N -0.52 -13.21 2.98 -678.74 -2.02 -15.23 16 3 C 0.16 3.69 10.20 84.09 0.86 4.55 16 4 C -0.22 -6.95 3.95 -18.68 -0.07 -7.03 16 5 C -0.02 -0.55 9.54 23.79 0.23 -0.33 16 6 C -0.21 -7.40 6.03 22.42 0.14 -7.26 16 7 C 0.47 23.38 5.86 85.03 0.50 23.88 16 8 O -0.63 -35.44 11.91 10.30 0.12 -35.32 16 9 N -0.45 -23.61 2.55 -619.49 -1.58 -25.19 16 10 C -0.35 -22.07 9.73 84.11 0.82 -21.25 16 11 H 0.05 3.85 7.39 -2.91 -0.02 3.83 16 12 C 0.02 1.40 5.16 84.95 0.44 1.84 16 13 N -0.87 -52.02 13.95 21.68 0.30 -51.72 16 14 Si 0.92 43.48 24.04 68.60 1.65 45.13 16 15 H -0.24 -9.85 6.55 99.48 0.65 -9.20 16 16 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 17 H -0.26 -12.46 6.16 99.48 0.61 -11.85 16 18 C 0.09 3.95 2.15 45.71 0.10 4.05 16 19 C -0.14 -4.52 5.84 31.69 0.19 -4.34 16 20 C -0.11 -2.30 6.68 31.91 0.21 -2.09 16 21 C -0.12 -2.84 6.10 31.67 0.19 -2.65 16 22 C -0.15 -5.20 4.89 31.32 0.15 -5.05 16 23 C 0.56 23.32 5.63 86.61 0.49 23.81 16 24 O -0.55 -26.78 15.36 10.78 0.17 -26.62 16 25 N -0.56 -21.65 2.96 -800.49 -2.37 -24.02 16 26 C 0.08 2.88 10.11 127.77 1.29 4.17 16 27 C 0.68 23.61 8.09 179.35 1.45 25.06 16 28 O -0.58 -21.52 15.62 -3.94 -0.06 -21.58 16 29 H 0.14 0.67 7.72 -2.39 -0.02 0.65 16 30 H 0.09 1.14 8.14 -2.38 -0.02 1.12 16 31 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.23 2.24 7.84 -2.91 -0.02 2.22 16 33 H 0.19 2.73 8.06 -2.91 -0.02 2.70 16 34 H 0.18 5.02 1.67 -2.91 0.00 5.02 16 35 H 0.28 15.39 8.31 -92.71 -0.77 14.62 16 36 H 0.07 3.08 2.22 -2.39 -0.01 3.07 16 37 H 0.09 2.74 5.17 -2.38 -0.01 2.72 16 38 H 0.07 2.10 8.14 -2.38 -0.02 2.08 16 39 H 0.08 1.50 8.14 -2.39 -0.02 1.49 16 40 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 42 H 0.09 1.88 6.00 -2.38 -0.01 1.86 16 43 H 0.06 2.23 6.91 -2.38 -0.02 2.22 16 44 H 0.05 2.03 6.97 -2.38 -0.02 2.02 16 45 H 0.09 2.61 8.14 -2.38 -0.02 2.60 16 46 H 0.07 2.67 7.45 -2.39 -0.02 2.65 16 47 H 0.09 2.97 7.35 -2.38 -0.02 2.95 16 Total: -1.00 -95.74 359.14 5.33 -90.42 By element: Atomic # 1 Polarization: 23.45 SS G_CDS: 0.87 Total: 24.33 kcal Atomic # 6 Polarization: 31.56 SS G_CDS: 8.24 Total: 39.80 kcal Atomic # 7 Polarization: -110.50 SS G_CDS: -5.67 Total: -116.16 kcal Atomic # 8 Polarization: -83.74 SS G_CDS: 0.23 Total: -83.51 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 1.65 Total: 45.13 kcal Total: -95.74 5.33 -90.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491883315.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.655 kcal (2) G-P(sol) polarization free energy of solvation -95.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds