Wall clock time and date at job start Wed Apr 1 2020 04:27:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46892 * 111.00306 * 2 1 4 4 C 1.50701 * 109.46993 * 66.04420 * 3 2 1 5 5 H 1.07994 * 120.00328 * 0.02562 * 4 3 2 6 6 C 1.37880 * 120.00179 * 179.97438 * 4 3 2 7 7 N 1.31513 * 120.00377 * 179.97438 * 6 4 3 8 8 Si 1.86803 * 119.99660 * 0.02562 * 6 4 3 9 9 H 1.48504 * 109.47222 * 89.99907 * 8 6 4 10 10 H 1.48506 * 109.46921 * 209.99294 * 8 6 4 11 11 H 1.48496 * 109.47220 * 329.99339 * 8 6 4 12 12 C 1.46906 * 110.99925 * 236.04735 * 2 1 3 13 13 C 1.52998 * 109.47197 * 199.76710 * 12 2 1 14 14 H 1.09003 * 109.47068 * 302.16128 * 13 12 2 15 15 O 1.42905 * 109.47031 * 62.15935 * 13 12 2 16 16 C 1.52999 * 109.47318 * 182.15693 * 13 12 2 17 17 N 1.46901 * 109.47409 * 179.97438 * 16 13 12 18 18 C 1.46893 * 111.00024 * 180.02562 * 17 16 13 19 19 C 1.50702 * 109.47178 * 180.02562 * 18 17 16 20 20 C 1.38225 * 119.62130 * 94.99664 * 19 18 17 21 21 C 1.38629 * 119.16348 * 179.97438 * 20 19 18 22 22 C 1.38674 * 118.41631 * 0.02562 * 21 20 19 23 23 C 1.38185 * 119.16623 * 0.02562 * 22 21 20 24 24 C 1.50702 * 119.61386 * 180.02562 * 23 22 21 25 25 F 1.39898 * 109.47543 * 89.99644 * 24 23 22 26 26 F 1.39908 * 109.46577 * 209.99615 * 24 23 22 27 27 F 1.39902 * 109.47046 * 329.98964 * 24 23 22 28 28 N 1.31851 * 119.61340 * 274.72563 * 19 18 17 29 29 H 1.08999 * 109.47031 * 54.96694 * 1 2 3 30 30 H 1.09002 * 109.47006 * 174.96219 * 1 2 3 31 31 H 1.08993 * 109.46940 * 294.96483 * 1 2 3 32 32 H 1.08994 * 109.47530 * 186.04788 * 3 2 1 33 33 H 1.09002 * 109.46948 * 306.04925 * 3 2 1 34 34 H 0.96992 * 120.00116 * 180.02562 * 7 6 4 35 35 H 1.09000 * 109.46958 * 319.76806 * 12 2 1 36 36 H 1.09002 * 109.47247 * 79.76447 * 12 2 1 37 37 H 0.96701 * 114.00201 * 59.99801 * 15 13 12 38 38 H 1.08995 * 109.47044 * 300.00138 * 16 13 12 39 39 H 1.09002 * 109.46836 * 59.99632 * 16 13 12 40 40 H 1.00901 * 110.99676 * 56.04861 * 17 16 13 41 41 H 1.09006 * 109.47427 * 300.00241 * 18 17 16 42 42 H 1.08997 * 109.47301 * 59.99976 * 18 17 16 43 43 H 1.08001 * 120.41704 * 359.96120 * 20 19 18 44 44 H 1.07993 * 120.78894 * 180.02562 * 21 20 19 45 45 H 1.08001 * 120.41284 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6370 2.0470 1.2984 5 1 1.0746 1.5112 2.0488 6 6 2.0277 3.3490 1.5290 7 7 1.7144 3.9389 2.6619 8 14 3.0010 4.2757 0.2314 9 1 2.0645 4.9803 -0.6806 10 1 3.8882 5.2667 0.8920 11 1 3.8241 3.3169 -0.5485 12 6 1.9955 -0.7660 -1.1377 13 6 3.4455 -1.1649 -0.8566 14 1 4.0400 -0.2695 -0.6748 15 8 3.4925 -2.0098 0.2950 16 6 4.0109 -1.9161 -2.0636 17 7 5.4034 -2.2986 -1.7941 18 6 5.9805 -3.0231 -2.9342 19 6 7.4060 -3.3987 -2.6212 20 6 7.6853 -4.6502 -2.1052 21 6 9.0000 -4.9859 -1.8213 22 6 9.9891 -4.0457 -2.0677 23 6 9.6339 -2.8140 -2.5838 24 6 10.7007 -1.7849 -2.8560 25 9 11.1737 -1.9381 -4.1637 26 9 10.1620 -0.5030 -2.7021 27 9 11.7567 -1.9583 -1.9548 28 7 8.3730 -2.5315 -2.8479 29 1 -0.3633 0.5899 -0.8415 30 1 -0.3633 -1.0237 -0.0902 31 1 -0.3633 0.4337 0.9316 32 1 3.0797 1.3443 -0.1083 33 1 1.5611 1.9273 -0.8309 34 1 1.9890 4.8549 2.8238 35 1 1.3932 -1.6630 -1.2815 36 1 1.9552 -0.1531 -2.0382 37 1 2.9842 -2.8273 0.2040 38 1 3.4165 -2.8115 -2.2453 39 1 3.9750 -1.2717 -2.9420 40 1 5.4714 -2.8432 -0.9473 41 1 5.4001 -3.9264 -3.1222 42 1 5.9579 -2.3862 -3.8184 43 1 6.8892 -5.3575 -1.9252 44 1 9.2479 -5.9564 -1.4178 45 1 11.0240 -4.2732 -1.8588 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000572114515.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:48 Heat of formation + Delta-G solvation = -148.950109 kcal Electronic energy + Delta-G solvation = -30009.905637 eV Core-core repulsion = 25226.910060 eV Total energy + Delta-G solvation = -4782.995576 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.156 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -50.43838 -48.00496 -47.84694 -40.93730 -38.39825 -36.34068 -35.23012 -33.29343 -32.71550 -32.38624 -30.01868 -28.05940 -27.44939 -26.59347 -24.87276 -23.21292 -23.06235 -22.26945 -21.52686 -19.98566 -18.91454 -18.82253 -18.65731 -17.25868 -16.89939 -16.65197 -16.25804 -16.01091 -15.46465 -15.14173 -14.86220 -14.74769 -14.66999 -14.53511 -14.34930 -14.19556 -14.07052 -14.03805 -14.01459 -13.88367 -13.48845 -13.19628 -13.08827 -12.70825 -12.55517 -12.27306 -12.09904 -11.93227 -11.53333 -11.32705 -11.11389 -10.75082 -10.62484 -10.55680 -10.13483 -10.07506 -9.88357 -9.80613 -9.64456 -9.17858 -8.62345 -8.51837 -7.34253 -5.99683 -3.96462 0.19466 0.60101 2.11091 2.89395 3.19200 3.32927 3.41406 3.44335 3.48949 3.82531 4.07424 4.10329 4.23093 4.35760 4.45248 4.47607 4.61775 4.64641 4.78606 4.85630 4.98693 5.14996 5.20609 5.31513 5.33607 5.40381 5.44407 5.46710 5.59582 5.66539 5.89559 5.90771 6.00953 6.25208 6.38813 6.65663 6.72878 6.86358 7.00042 7.15159 7.24921 7.64612 7.87707 8.02436 8.06531 8.70864 9.09163 9.62232 11.13619 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.011324 B = 0.002362 C = 0.002066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2471.940366 B =11852.179653 C =13549.305486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.521 5.521 3 C 0.161 3.839 4 C -0.506 4.506 5 H 0.080 0.920 6 C 0.068 3.932 7 N -0.901 5.901 8 Si 0.873 3.127 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.266 1.266 12 C 0.023 3.977 13 C 0.115 3.885 14 H 0.110 0.890 15 O -0.539 6.539 16 C 0.031 3.969 17 N -0.675 5.675 18 C 0.108 3.892 19 C 0.142 3.858 20 C -0.135 4.135 21 C -0.071 4.071 22 C -0.126 4.126 23 C 0.041 3.959 24 C 0.523 3.477 25 F -0.173 7.173 26 F -0.160 7.160 27 F -0.172 7.172 28 N -0.423 5.423 29 H 0.012 0.988 30 H 0.044 0.956 31 H 0.078 0.922 32 H 0.030 0.970 33 H -0.018 1.018 34 H 0.263 0.737 35 H 0.063 0.937 36 H 0.033 0.967 37 H 0.359 0.641 38 H 0.032 0.968 39 H 0.082 0.918 40 H 0.350 0.650 41 H 0.051 0.949 42 H 0.094 0.906 43 H 0.146 0.854 44 H 0.149 0.851 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.073 -22.932 -14.612 31.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.245 5.245 3 C 0.035 3.965 4 C -0.544 4.544 5 H 0.098 0.902 6 C -0.134 4.134 7 N -0.541 5.541 8 Si 0.701 3.299 9 H -0.204 1.204 10 H -0.211 1.211 11 H -0.191 1.191 12 C -0.106 4.106 13 C 0.055 3.945 14 H 0.128 0.872 15 O -0.342 6.342 16 C -0.099 4.099 17 N -0.308 5.308 18 C -0.022 4.022 19 C 0.002 3.998 20 C -0.156 4.156 21 C -0.097 4.097 22 C -0.147 4.147 23 C -0.099 4.099 24 C 0.467 3.533 25 F -0.154 7.154 26 F -0.141 7.141 27 F -0.154 7.154 28 N -0.132 5.132 29 H 0.030 0.970 30 H 0.063 0.937 31 H 0.096 0.904 32 H 0.048 0.952 33 H -0.001 1.001 34 H 0.073 0.927 35 H 0.082 0.918 36 H 0.051 0.949 37 H 0.204 0.796 38 H 0.050 0.950 39 H 0.100 0.900 40 H 0.169 0.831 41 H 0.069 0.931 42 H 0.112 0.888 43 H 0.164 0.836 44 H 0.167 0.833 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 15.695 -21.024 -14.405 29.930 hybrid contribution -0.126 -0.831 -1.277 1.529 sum 15.569 -21.854 -15.682 31.079 Atomic orbital electron populations 1.22231 0.88171 0.98836 1.01599 1.61869 1.06972 1.16501 1.39147 1.20257 0.95370 0.83888 0.96988 1.21011 1.35392 0.97098 1.00894 0.90171 1.24896 0.95744 0.97395 0.95317 1.69888 1.47015 1.13228 1.23937 0.86889 0.80672 0.80154 0.82225 1.20446 1.21081 1.19056 1.22729 0.95978 0.98351 0.93582 1.21986 0.95117 0.93700 0.83743 0.87245 1.86729 1.73786 1.34384 1.39261 1.22703 0.87636 0.99234 1.00287 1.60227 1.18668 1.47251 1.04604 1.20833 0.87555 0.97724 0.96045 1.21167 0.94954 0.89173 0.94487 1.22270 0.98001 0.97600 0.97697 1.21620 0.92105 0.99729 0.96211 1.21876 1.02086 0.92843 0.97846 1.20928 0.92371 0.93738 1.02869 1.17873 0.80260 0.80821 0.74330 1.93232 1.89302 1.95592 1.37290 1.93279 1.85624 1.40036 1.95125 1.93209 1.58999 1.95331 1.67820 1.66984 0.98661 1.34028 1.13481 0.96956 0.93679 0.90351 0.95217 1.00057 0.92708 0.91848 0.94858 0.79560 0.94956 0.90001 0.83091 0.93102 0.88782 0.83647 0.83280 0.83359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.76 9.31 60.07 0.56 1.32 16 2 N -0.52 -10.85 4.59 -244.38 -1.12 -11.97 16 3 C 0.16 3.99 3.62 -4.98 -0.02 3.97 16 4 C -0.51 -14.73 9.13 -34.44 -0.31 -15.05 16 5 H 0.08 2.54 7.34 -52.49 -0.39 2.15 16 6 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 7 N -0.90 -28.25 13.96 55.43 0.77 -27.47 16 8 Si 0.87 22.20 27.47 -169.99 -4.67 17.53 16 9 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 10 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 11 H -0.27 -6.55 6.54 56.52 0.37 -6.18 16 12 C 0.02 0.37 4.65 -3.82 -0.02 0.35 16 13 C 0.11 1.71 3.31 -26.73 -0.09 1.63 16 14 H 0.11 2.05 6.73 -51.93 -0.35 1.70 16 15 O -0.54 -8.19 12.58 -35.23 -0.44 -8.63 16 16 C 0.03 0.34 5.39 -3.82 -0.02 0.32 16 17 N -0.67 -7.50 6.49 -115.06 -0.75 -8.25 16 18 C 0.11 0.95 5.99 -4.98 -0.03 0.92 16 19 C 0.14 1.33 6.29 -82.59 -0.52 0.81 16 20 C -0.14 -0.87 9.72 -39.44 -0.38 -1.25 16 21 C -0.07 -0.39 10.18 -39.28 -0.40 -0.79 16 22 C -0.13 -0.91 9.43 -39.44 -0.37 -1.28 16 23 C 0.04 0.42 6.29 -82.59 -0.52 -0.10 16 24 C 0.52 5.60 3.43 36.01 0.12 5.72 16 25 F -0.17 -1.82 17.30 2.25 0.04 -1.78 16 26 F -0.16 -2.09 17.04 2.25 0.04 -2.05 16 27 F -0.17 -1.67 16.44 2.25 0.04 -1.63 16 28 N -0.42 -5.02 9.88 -5.74 -0.06 -5.07 16 29 H 0.01 0.22 8.08 -51.93 -0.42 -0.20 16 30 H 0.04 0.70 7.85 -51.93 -0.41 0.29 16 31 H 0.08 1.65 7.01 -51.93 -0.36 1.29 16 32 H 0.03 0.76 5.66 -51.93 -0.29 0.46 16 33 H -0.02 -0.45 7.50 -51.93 -0.39 -0.84 16 34 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 35 H 0.06 0.83 7.75 -51.93 -0.40 0.43 16 36 H 0.03 0.52 8.00 -51.93 -0.42 0.11 16 37 H 0.36 3.88 9.05 45.56 0.41 4.29 16 38 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 39 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.35 3.76 8.11 -39.29 -0.32 3.44 16 41 H 0.05 0.31 8.04 -51.93 -0.42 -0.10 16 42 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.15 0.53 8.06 -52.49 -0.42 0.10 16 44 H 0.15 0.35 8.06 -52.49 -0.42 -0.08 16 45 H 0.15 0.72 7.60 -52.49 -0.40 0.32 16 LS Contribution 386.31 15.07 5.82 5.82 Total: -1.00 -35.09 386.31 -7.86 -42.95 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -5.43 Total: 2.08 kcal Atomic # 6 Polarization: 0.58 SS G_CDS: -2.10 Total: -1.52 kcal Atomic # 7 Polarization: -51.61 SS G_CDS: -1.15 Total: -52.76 kcal Atomic # 8 Polarization: -8.19 SS G_CDS: -0.44 Total: -8.63 kcal Atomic # 9 Polarization: -5.58 SS G_CDS: 0.11 Total: -5.47 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.67 Total: 17.53 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.09 -7.86 -42.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572114515.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.000 kcal (2) G-P(sol) polarization free energy of solvation -35.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds