Wall clock time and date at job start Wed Apr 1 2020 04:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46892 * 111.00306 * 2 1 4 4 C 1.50701 * 109.46993 * 66.04420 * 3 2 1 5 5 H 1.07994 * 120.00328 * 0.02562 * 4 3 2 6 6 C 1.37880 * 120.00179 * 179.97438 * 4 3 2 7 7 N 1.31513 * 120.00377 * 179.97438 * 6 4 3 8 8 Si 1.86803 * 119.99660 * 0.02562 * 6 4 3 9 9 H 1.48504 * 109.47222 * 89.99907 * 8 6 4 10 10 H 1.48506 * 109.46921 * 209.99294 * 8 6 4 11 11 H 1.48496 * 109.47220 * 329.99339 * 8 6 4 12 12 C 1.46906 * 110.99925 * 236.04735 * 2 1 3 13 13 C 1.52998 * 109.47197 * 199.76710 * 12 2 1 14 14 H 1.09003 * 109.47068 * 302.16128 * 13 12 2 15 15 O 1.42905 * 109.47031 * 62.15935 * 13 12 2 16 16 C 1.52999 * 109.47318 * 182.15693 * 13 12 2 17 17 N 1.46901 * 109.47409 * 179.97438 * 16 13 12 18 18 C 1.46893 * 111.00024 * 180.02562 * 17 16 13 19 19 C 1.50702 * 109.47178 * 180.02562 * 18 17 16 20 20 C 1.38225 * 119.62130 * 94.99664 * 19 18 17 21 21 C 1.38629 * 119.16348 * 179.97438 * 20 19 18 22 22 C 1.38674 * 118.41631 * 0.02562 * 21 20 19 23 23 C 1.38185 * 119.16623 * 0.02562 * 22 21 20 24 24 C 1.50702 * 119.61386 * 180.02562 * 23 22 21 25 25 F 1.39898 * 109.47543 * 89.99644 * 24 23 22 26 26 F 1.39908 * 109.46577 * 209.99615 * 24 23 22 27 27 F 1.39902 * 109.47046 * 329.98964 * 24 23 22 28 28 N 1.31851 * 119.61340 * 274.72563 * 19 18 17 29 29 H 1.08999 * 109.47031 * 54.96694 * 1 2 3 30 30 H 1.09002 * 109.47006 * 174.96219 * 1 2 3 31 31 H 1.08993 * 109.46940 * 294.96483 * 1 2 3 32 32 H 1.08994 * 109.47530 * 186.04788 * 3 2 1 33 33 H 1.09002 * 109.46948 * 306.04925 * 3 2 1 34 34 H 0.96992 * 120.00116 * 180.02562 * 7 6 4 35 35 H 1.09000 * 109.46958 * 319.76806 * 12 2 1 36 36 H 1.09002 * 109.47247 * 79.76447 * 12 2 1 37 37 H 0.96701 * 114.00201 * 59.99801 * 15 13 12 38 38 H 1.08995 * 109.47044 * 300.00138 * 16 13 12 39 39 H 1.09002 * 109.46836 * 59.99632 * 16 13 12 40 40 H 1.00901 * 110.99676 * 56.04861 * 17 16 13 41 41 H 1.09006 * 109.47427 * 300.00241 * 18 17 16 42 42 H 1.08997 * 109.47301 * 59.99976 * 18 17 16 43 43 H 1.08001 * 120.41704 * 359.96120 * 20 19 18 44 44 H 1.07993 * 120.78894 * 180.02562 * 21 20 19 45 45 H 1.08001 * 120.41284 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6370 2.0470 1.2984 5 1 1.0746 1.5112 2.0488 6 6 2.0277 3.3490 1.5290 7 7 1.7144 3.9389 2.6619 8 14 3.0010 4.2757 0.2314 9 1 2.0645 4.9803 -0.6806 10 1 3.8882 5.2667 0.8920 11 1 3.8241 3.3169 -0.5485 12 6 1.9955 -0.7660 -1.1377 13 6 3.4455 -1.1649 -0.8566 14 1 4.0400 -0.2695 -0.6748 15 8 3.4925 -2.0098 0.2950 16 6 4.0109 -1.9161 -2.0636 17 7 5.4034 -2.2986 -1.7941 18 6 5.9805 -3.0231 -2.9342 19 6 7.4060 -3.3987 -2.6212 20 6 7.6853 -4.6502 -2.1052 21 6 9.0000 -4.9859 -1.8213 22 6 9.9891 -4.0457 -2.0677 23 6 9.6339 -2.8140 -2.5838 24 6 10.7007 -1.7849 -2.8560 25 9 11.1737 -1.9381 -4.1637 26 9 10.1620 -0.5030 -2.7021 27 9 11.7567 -1.9583 -1.9548 28 7 8.3730 -2.5315 -2.8479 29 1 -0.3633 0.5899 -0.8415 30 1 -0.3633 -1.0237 -0.0902 31 1 -0.3633 0.4337 0.9316 32 1 3.0797 1.3443 -0.1083 33 1 1.5611 1.9273 -0.8309 34 1 1.9890 4.8549 2.8238 35 1 1.3932 -1.6630 -1.2815 36 1 1.9552 -0.1531 -2.0382 37 1 2.9842 -2.8273 0.2040 38 1 3.4165 -2.8115 -2.2453 39 1 3.9750 -1.2717 -2.9420 40 1 5.4714 -2.8432 -0.9473 41 1 5.4001 -3.9264 -3.1222 42 1 5.9579 -2.3862 -3.8184 43 1 6.8892 -5.3575 -1.9252 44 1 9.2479 -5.9564 -1.4178 45 1 11.0240 -4.2732 -1.8588 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000572114515.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:47 Heat of formation + Delta-G solvation = -178.342883 kcal Electronic energy + Delta-G solvation = -30011.180203 eV Core-core repulsion = 25226.910060 eV Total energy + Delta-G solvation = -4784.270143 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.156 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -51.26906 -48.80389 -48.74179 -41.50877 -39.59374 -37.59953 -36.28955 -34.60045 -33.82623 -33.41387 -31.19535 -29.94584 -28.38380 -27.36810 -26.08180 -24.66499 -23.76788 -22.94196 -22.72691 -21.61398 -19.66181 -19.64121 -19.44663 -19.06563 -17.93076 -17.36501 -17.16970 -17.01463 -16.52104 -16.32210 -16.08056 -15.79047 -15.65472 -15.57149 -15.47010 -15.18671 -15.09762 -14.90705 -14.89931 -14.74968 -14.64509 -14.45620 -14.30334 -13.85978 -13.74573 -13.33460 -13.22817 -13.10635 -12.77164 -12.65746 -12.61514 -12.49849 -12.15817 -11.83924 -11.64998 -11.44676 -11.07858 -10.85253 -10.79771 -10.66701 -10.37949 -9.34258 -8.95790 -8.29835 -6.31955 -0.36071 0.08973 1.29952 1.34148 1.37933 1.44009 2.29964 2.32124 2.43990 2.79996 2.97771 3.04429 3.28121 3.35352 3.50548 3.72758 3.76116 3.85932 3.96817 4.02161 4.16178 4.21207 4.32195 4.36719 4.41047 4.53624 4.57330 4.63013 4.70838 4.75240 4.82910 4.91124 4.92471 4.98909 5.00700 5.20050 5.23228 5.43900 5.55860 5.94023 6.01689 6.38832 6.42334 6.65549 6.66361 6.74386 7.09689 7.31346 8.87094 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.011324 B = 0.002362 C = 0.002066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2471.940366 B =11852.179653 C =13549.305486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.542 5.542 3 C 0.173 3.827 4 C -0.513 4.513 5 H 0.038 0.962 6 C 0.008 3.992 7 N -0.948 5.948 8 Si 0.942 3.058 9 H -0.263 1.263 10 H -0.281 1.281 11 H -0.255 1.255 12 C 0.024 3.976 13 C 0.120 3.880 14 H 0.062 0.938 15 O -0.560 6.560 16 C 0.046 3.954 17 N -0.698 5.698 18 C 0.112 3.888 19 C 0.119 3.881 20 C -0.125 4.125 21 C -0.063 4.063 22 C -0.123 4.123 23 C 0.012 3.988 24 C 0.520 3.480 25 F -0.176 7.176 26 F -0.180 7.180 27 F -0.168 7.168 28 N -0.467 5.467 29 H 0.016 0.984 30 H 0.086 0.914 31 H 0.042 0.958 32 H 0.022 0.978 33 H -0.016 1.016 34 H 0.267 0.733 35 H 0.102 0.898 36 H 0.038 0.962 37 H 0.380 0.620 38 H 0.068 0.932 39 H 0.079 0.921 40 H 0.351 0.649 41 H 0.086 0.914 42 H 0.079 0.921 43 H 0.180 0.820 44 H 0.190 0.810 45 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.398 -26.120 -16.455 34.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 N -0.266 5.266 3 C 0.046 3.954 4 C -0.551 4.551 5 H 0.056 0.944 6 C -0.189 4.189 7 N -0.589 5.589 8 Si 0.766 3.234 9 H -0.188 1.188 10 H -0.206 1.206 11 H -0.179 1.179 12 C -0.104 4.104 13 C 0.060 3.940 14 H 0.080 0.920 15 O -0.366 6.366 16 C -0.083 4.083 17 N -0.332 5.332 18 C -0.016 4.016 19 C -0.021 4.021 20 C -0.144 4.144 21 C -0.089 4.089 22 C -0.143 4.143 23 C -0.127 4.127 24 C 0.465 3.535 25 F -0.157 7.157 26 F -0.162 7.162 27 F -0.149 7.149 28 N -0.176 5.176 29 H 0.035 0.965 30 H 0.105 0.895 31 H 0.061 0.939 32 H 0.040 0.960 33 H 0.002 0.998 34 H 0.076 0.924 35 H 0.121 0.879 36 H 0.057 0.943 37 H 0.228 0.772 38 H 0.086 0.914 39 H 0.098 0.902 40 H 0.170 0.830 41 H 0.104 0.896 42 H 0.097 0.903 43 H 0.197 0.803 44 H 0.207 0.793 45 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 16.013 -24.246 -16.269 33.301 hybrid contribution -0.257 0.028 -0.615 0.667 sum 15.756 -24.218 -16.883 33.464 Atomic orbital electron populations 1.22201 0.87207 1.01194 0.99902 1.61721 1.08052 1.14375 1.42406 1.19949 0.94963 0.86162 0.94355 1.21279 1.34532 0.97348 1.01938 0.94366 1.25814 0.96955 0.98517 0.97632 1.70038 1.48723 1.13880 1.26259 0.85789 0.79363 0.78791 0.79480 1.18827 1.20636 1.17917 1.22864 0.96871 0.99015 0.91689 1.21761 0.94038 0.92866 0.85312 0.92040 1.86677 1.74514 1.35575 1.39813 1.22474 0.88089 1.00025 0.97756 1.60130 1.18872 1.48565 1.05592 1.20840 0.87808 0.98563 0.94427 1.21432 0.94628 0.90315 0.95700 1.22649 0.99445 0.96708 0.95640 1.22134 0.91251 1.00720 0.94763 1.22210 1.03782 0.91814 0.96528 1.20947 0.91866 0.94752 1.05117 1.18089 0.80755 0.80389 0.74271 1.93214 1.89396 1.95537 1.37546 1.93224 1.86009 1.41673 1.95253 1.93204 1.58851 1.95238 1.67613 1.66846 0.99719 1.35902 1.15172 0.96501 0.89537 0.93893 0.95959 0.99841 0.92448 0.87936 0.94337 0.77166 0.91403 0.90230 0.82969 0.89641 0.90271 0.80254 0.79277 0.81289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.59 9.31 127.69 1.19 2.77 16 2 N -0.54 -22.15 4.59 -927.07 -4.25 -26.40 16 3 C 0.17 8.62 3.62 85.56 0.31 8.93 16 4 C -0.51 -30.89 9.13 25.60 0.23 -30.66 16 5 H 0.04 2.56 7.34 -2.91 -0.02 2.53 16 6 C 0.01 0.48 5.47 84.66 0.46 0.95 16 7 N -0.95 -61.32 13.96 21.45 0.30 -61.02 16 8 Si 0.94 46.41 27.47 68.60 1.88 48.30 16 9 H -0.26 -12.28 7.11 99.48 0.71 -11.57 16 10 H -0.28 -13.56 7.11 99.48 0.71 -12.85 16 11 H -0.26 -12.03 6.54 99.48 0.65 -11.38 16 12 C 0.02 0.71 4.65 86.30 0.40 1.11 16 13 C 0.12 3.43 3.31 30.59 0.10 3.54 16 14 H 0.06 2.35 6.73 -2.39 -0.02 2.33 16 15 O -0.56 -16.13 12.58 -148.98 -1.87 -18.00 16 16 C 0.05 0.89 5.39 86.30 0.47 1.36 16 17 N -0.70 -14.32 6.49 -517.94 -3.36 -17.68 16 18 C 0.11 1.73 5.99 85.56 0.51 2.25 16 19 C 0.12 2.04 6.29 42.55 0.27 2.30 16 20 C -0.12 -1.16 9.72 22.36 0.22 -0.94 16 21 C -0.06 -0.47 10.18 22.47 0.23 -0.24 16 22 C -0.12 -1.52 9.43 22.36 0.21 -1.31 16 23 C 0.01 0.24 6.29 42.54 0.27 0.51 16 24 C 0.52 11.44 3.43 71.24 0.24 11.68 16 25 F -0.18 -3.80 17.30 44.97 0.78 -3.03 16 26 F -0.18 -4.99 17.04 44.97 0.77 -4.23 16 27 F -0.17 -3.25 16.44 44.97 0.74 -2.51 16 28 N -0.47 -11.03 9.88 -172.07 -1.70 -12.73 16 29 H 0.02 0.59 8.08 -2.39 -0.02 0.57 16 30 H 0.09 2.43 7.85 -2.39 -0.02 2.41 16 31 H 0.04 1.85 7.01 -2.39 -0.02 1.84 16 32 H 0.02 1.15 5.66 -2.39 -0.01 1.14 16 33 H -0.02 -0.78 7.50 -2.39 -0.02 -0.80 16 34 H 0.27 16.06 8.31 -92.71 -0.77 15.29 16 35 H 0.10 2.20 7.75 -2.39 -0.02 2.19 16 36 H 0.04 1.11 8.00 -2.39 -0.02 1.09 16 37 H 0.38 7.05 9.05 -74.06 -0.67 6.38 16 38 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.35 6.86 8.11 -89.69 -0.73 6.14 16 41 H 0.09 0.70 8.04 -2.38 -0.02 0.68 16 42 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.18 0.36 8.06 -2.91 -0.02 0.33 16 44 H 0.19 -0.16 8.06 -2.91 -0.02 -0.18 16 45 H 0.17 1.22 7.60 -2.91 -0.02 1.20 16 Total: -1.00 -81.89 386.31 -2.02 -83.91 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -0.41 Total: 11.15 kcal Atomic # 6 Polarization: -2.87 SS G_CDS: 5.11 Total: 2.25 kcal Atomic # 7 Polarization: -108.82 SS G_CDS: -9.02 Total: -117.84 kcal Atomic # 8 Polarization: -16.13 SS G_CDS: -1.87 Total: -18.00 kcal Atomic # 9 Polarization: -12.04 SS G_CDS: 2.28 Total: -9.76 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 1.88 Total: 48.30 kcal Total: -81.89 -2.02 -83.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572114515.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.435 kcal (2) G-P(sol) polarization free energy of solvation -81.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds