Wall clock time and date at job start Wed Apr 1 2020 05:13:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35997 * 117.00138 * 2 1 4 4 C 1.38560 * 120.07232 * 0.02562 * 3 2 1 5 5 C 1.38244 * 119.99927 * 179.97438 * 4 3 2 6 6 C 1.50704 * 119.92643 * 180.02562 * 5 4 3 7 7 N 1.46895 * 109.47030 * 89.99664 * 6 5 4 8 8 C 1.46906 * 110.99789 * 179.97438 * 7 6 5 9 9 C 1.53002 * 109.47053 * 179.97438 * 8 7 6 10 10 H 1.08998 * 109.46957 * 55.00131 * 9 8 7 11 11 C 1.47199 * 109.47124 * 295.00243 * 9 8 7 12 12 N 7.20329 * 64.26314 * 38.36026 * 2 1 3 13 13 C 1.53001 * 109.46964 * 175.00091 * 9 8 7 14 14 C 1.50699 * 109.46841 * 185.00248 * 13 9 8 15 15 H 1.07995 * 120.00262 * 359.97438 * 14 13 9 16 16 C 1.37881 * 119.99856 * 180.02562 * 14 13 9 17 17 N 1.31519 * 120.00103 * 359.97438 * 16 14 13 18 18 Si 1.86791 * 120.00124 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47478 * 90.00031 * 18 16 14 20 20 H 1.48507 * 109.47246 * 210.00145 * 18 16 14 21 21 H 1.48501 * 109.47049 * 329.99845 * 18 16 14 22 22 C 1.38251 * 120.14507 * 0.26796 * 5 4 3 23 23 C 1.38247 * 120.14507 * 359.45575 * 22 5 4 24 24 C 1.38563 * 120.00005 * 0.54472 * 23 22 5 25 25 O 1.35994 * 120.07189 * 179.70146 * 24 23 22 26 26 C 1.42899 * 117.00202 * 0.02562 * 25 24 23 27 27 C 1.50696 * 109.47060 * 179.97438 * 26 25 24 28 28 N 1.34774 * 119.99978 * 180.02562 * 27 26 25 29 29 O 1.21282 * 119.99878 * 0.02562 * 27 26 25 30 30 H 1.09007 * 109.46933 * 299.99783 * 1 2 3 31 31 H 1.09002 * 109.47377 * 59.99361 * 1 2 3 32 32 H 1.08996 * 109.47408 * 179.97438 * 1 2 3 33 33 H 1.08002 * 120.00009 * 359.97438 * 4 3 2 34 34 H 1.08996 * 109.46908 * 329.99482 * 6 5 4 35 35 H 1.09002 * 109.46622 * 209.99656 * 6 5 4 36 36 H 1.00899 * 111.00672 * 56.04735 * 7 6 5 37 37 H 1.08992 * 109.47459 * 299.99826 * 8 7 6 38 38 H 1.09004 * 109.47040 * 59.99976 * 8 7 6 39 39 H 1.08995 * 109.47139 * 305.00028 * 13 9 8 40 40 H 1.09005 * 109.47062 * 65.00231 * 13 9 8 41 41 H 0.96994 * 120.00407 * 179.97438 * 17 16 14 42 42 H 1.08003 * 119.92925 * 179.70866 * 22 5 4 43 43 H 1.08004 * 119.99816 * 180.25145 * 23 22 5 44 44 H 1.08995 * 109.46810 * 299.99867 * 26 25 24 45 45 H 1.09001 * 109.46902 * 59.99683 * 26 25 24 46 46 H 0.97000 * 120.00154 * 0.02562 * 28 27 26 47 47 H 0.96995 * 120.00300 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2932 2.3748 0.0005 5 6 1.9225 3.6057 0.0011 6 6 1.1017 4.8696 0.0022 7 7 0.8355 5.2793 1.3876 8 6 0.0363 6.5113 1.4279 9 6 -0.2205 6.9052 2.8838 10 1 0.7300 6.9863 3.4112 11 6 -1.0543 5.8787 3.5302 12 7 -1.6990 5.0880 4.0269 13 6 -0.9446 8.2523 2.9276 14 6 -1.0883 8.6991 4.3596 15 1 -0.7021 8.0836 5.1586 16 6 -1.7136 9.8931 4.6498 17 7 -2.1843 10.6424 3.6768 18 14 -1.8911 10.4473 6.4248 19 1 -0.7087 11.2587 6.8107 20 1 -3.1215 11.2668 6.5669 21 1 -1.9844 9.2571 7.3079 22 6 3.3030 3.6798 -0.0045 23 6 4.0603 2.5232 0.0007 24 6 3.4359 1.2862 0.0001 25 8 4.1795 0.1476 -0.0009 26 6 5.6003 0.3005 -0.0008 27 6 6.2518 -1.0583 -0.0013 28 7 7.5956 -1.1614 -0.0008 29 8 5.5668 -2.0592 -0.0023 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 0.2146 2.3196 0.0005 34 1 0.1573 4.6900 -0.5114 35 1 1.6501 5.6594 -0.5113 36 1 1.6955 5.3896 1.9037 37 1 0.5775 7.3122 0.9245 38 1 -0.9157 6.3434 0.9240 39 1 -0.3688 8.9925 2.3721 40 1 -1.9324 8.1486 2.4784 41 1 -2.6246 11.4823 3.8809 42 1 3.7909 4.6433 -0.0088 43 1 5.1386 2.5839 0.0004 44 1 5.9065 0.8510 -0.8902 45 1 5.9065 0.8495 0.8897 46 1 8.1434 -0.3609 0.0003 47 1 8.0150 -2.0360 -0.0008 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000580947488.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:00 Heat of formation + Delta-G solvation = -65.301238 kcal Electronic energy + Delta-G solvation = -28766.979681 eV Core-core repulsion = 24529.468132 eV Total energy + Delta-G solvation = -4237.511549 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.94675 -39.89045 -38.39920 -37.93328 -36.88780 -35.03503 -34.24072 -33.55772 -31.99964 -30.59468 -30.46331 -28.69022 -27.64041 -26.61397 -24.68815 -22.86388 -22.59236 -21.85319 -21.45624 -20.98921 -18.92448 -18.21187 -17.42446 -17.14478 -16.80812 -16.75075 -16.46563 -16.42512 -15.79142 -15.14204 -14.97475 -14.87755 -14.62453 -14.53098 -14.47679 -14.29290 -13.82155 -13.60826 -13.00877 -12.97429 -12.72745 -12.44692 -12.34089 -11.98479 -11.90997 -11.68948 -11.53198 -11.45362 -11.28009 -11.16513 -11.12922 -11.05693 -10.69871 -10.53384 -10.42070 -10.26287 -10.26031 -9.57561 -9.25370 -8.91416 -8.47989 -8.37833 -7.97258 -6.11394 -4.14501 1.05531 1.19674 2.07490 2.28179 3.11190 3.27831 3.35033 3.38817 3.39884 3.44014 3.74937 3.84298 4.21985 4.32637 4.42807 4.44870 4.53336 4.54107 4.66440 4.78609 4.90368 4.96201 5.03442 5.07353 5.17452 5.26763 5.27668 5.39437 5.43367 5.54666 5.60658 5.73459 5.91632 5.97481 6.01007 6.19313 6.35197 6.38973 6.44460 6.47297 6.64439 6.82119 7.02674 7.34591 7.39532 7.43843 7.51170 7.70758 7.83943 8.21313 8.58600 8.90315 9.51078 10.99423 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.017231 B = 0.001744 C = 0.001694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.590622 B =16049.218095 C =16521.501550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.305 6.305 3 C 0.104 3.896 4 C -0.148 4.148 5 C -0.071 4.071 6 C 0.100 3.900 7 N -0.689 5.689 8 C 0.066 3.934 9 C 0.009 3.991 10 H 0.099 0.901 11 C 0.255 3.745 12 N -0.478 5.478 13 C 0.032 3.968 14 C -0.526 4.526 15 H 0.057 0.943 16 C 0.062 3.938 17 N -0.892 5.892 18 Si 0.892 3.108 19 H -0.279 1.279 20 H -0.286 1.286 21 H -0.274 1.274 22 C -0.111 4.111 23 C -0.174 4.174 24 C 0.093 3.907 25 O -0.281 6.281 26 C 0.039 3.961 27 C 0.519 3.481 28 N -0.852 5.852 29 O -0.515 6.515 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.100 0.900 33 H 0.138 0.862 34 H 0.080 0.920 35 H 0.043 0.957 36 H 0.343 0.657 37 H 0.051 0.949 38 H 0.077 0.923 39 H 0.037 0.963 40 H 0.026 0.974 41 H 0.262 0.738 42 H 0.127 0.873 43 H 0.133 0.867 44 H 0.093 0.907 45 H 0.094 0.906 46 H 0.403 0.597 47 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.133 -16.980 -13.926 29.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.219 6.219 3 C 0.059 3.941 4 C -0.167 4.167 5 C -0.072 4.072 6 C -0.028 4.028 7 N -0.320 5.320 8 C -0.064 4.064 9 C -0.013 4.013 10 H 0.117 0.883 11 C -0.062 4.062 12 N -0.155 5.155 13 C -0.007 4.007 14 C -0.565 4.565 15 H 0.075 0.925 16 C -0.140 4.140 17 N -0.530 5.530 18 Si 0.719 3.281 19 H -0.205 1.205 20 H -0.211 1.211 21 H -0.198 1.198 22 C -0.129 4.129 23 C -0.193 4.193 24 C 0.047 3.953 25 O -0.194 6.194 26 C -0.041 4.041 27 C 0.302 3.698 28 N -0.419 5.419 29 O -0.388 6.388 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.118 0.882 33 H 0.156 0.844 34 H 0.098 0.902 35 H 0.061 0.939 36 H 0.161 0.839 37 H 0.069 0.931 38 H 0.096 0.904 39 H 0.056 0.944 40 H 0.045 0.955 41 H 0.072 0.928 42 H 0.145 0.855 43 H 0.151 0.849 44 H 0.111 0.889 45 H 0.112 0.888 46 H 0.231 0.769 47 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 17.881 -19.359 -13.147 29.450 hybrid contribution 1.197 1.822 0.603 2.262 sum 19.078 -17.537 -12.544 28.790 Atomic orbital electron populations 1.23100 0.78316 1.04030 1.01549 1.86202 1.21192 1.25644 1.88838 1.18226 0.88905 0.85460 1.01545 1.20996 1.00254 0.90653 1.04811 1.19547 0.93360 0.94388 0.99898 1.20829 0.98624 0.92688 0.90681 1.60558 1.24179 1.35058 1.12207 1.22098 0.98346 0.89660 0.96277 1.19212 0.97335 0.92468 0.92241 0.88327 1.28796 0.92948 0.92151 0.92320 1.80931 1.11084 1.13089 1.10420 1.19169 0.95860 0.87422 0.98258 1.21145 1.38146 1.05085 0.92079 0.92492 1.24955 0.95179 0.96585 0.97274 1.69935 1.38514 1.13082 1.31483 0.86589 0.77642 0.78754 0.85085 1.20496 1.21148 1.19847 1.20756 0.93025 0.97885 1.01284 1.20961 1.00055 0.90975 1.07274 1.18208 0.88204 0.85568 1.03285 1.86251 1.15647 1.28109 1.89344 1.22416 0.81885 0.95847 1.03915 1.20087 0.82767 0.90762 0.76172 1.43657 1.06512 1.12890 1.78851 1.90833 1.62734 1.38285 1.46950 0.92299 0.92678 0.88212 0.84413 0.90170 0.93913 0.83903 0.93119 0.90425 0.94438 0.95540 0.92802 0.85461 0.84927 0.88920 0.88844 0.76874 0.76002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.23 16 2 O -0.31 -4.05 10.28 -34.23 -0.35 -4.40 16 3 C 0.10 1.32 6.70 -39.12 -0.26 1.05 16 4 C -0.15 -1.69 8.69 -39.46 -0.34 -2.03 16 5 C -0.07 -0.74 5.39 -104.61 -0.56 -1.31 16 6 C 0.10 1.02 5.81 -4.98 -0.03 1.00 16 7 N -0.69 -8.47 6.19 -115.06 -0.71 -9.18 16 8 C 0.07 0.91 5.05 -3.82 -0.02 0.89 16 9 C 0.01 0.17 2.35 -93.41 -0.22 -0.05 16 10 H 0.10 1.61 8.14 -51.93 -0.42 1.19 16 11 C 0.25 5.27 13.66 -20.80 -0.28 4.99 16 12 N -0.48 -10.86 18.53 42.11 0.78 -10.08 16 13 C 0.03 0.71 4.42 -27.88 -0.12 0.59 16 14 C -0.53 -13.85 8.60 -34.44 -0.30 -14.14 16 15 H 0.06 1.50 7.59 -52.49 -0.40 1.10 16 16 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 17 N -0.89 -25.24 13.29 55.43 0.74 -24.50 16 18 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 20 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 22 C -0.11 -0.99 9.69 -39.57 -0.38 -1.37 16 23 C -0.17 -1.52 9.04 -39.46 -0.36 -1.87 16 24 C 0.09 1.07 6.70 -39.12 -0.26 0.81 16 25 O -0.28 -3.40 9.45 -47.35 -0.45 -3.85 16 26 C 0.04 0.26 5.22 36.00 0.19 0.45 16 27 C 0.52 4.27 8.18 -10.99 -0.09 4.18 16 28 N -0.85 -2.74 8.87 31.22 0.28 -2.47 16 29 O -0.51 -7.19 17.34 -14.36 -0.25 -7.44 16 30 H 0.06 0.55 7.66 -51.93 -0.40 0.15 16 31 H 0.05 0.44 7.66 -51.93 -0.40 0.04 16 32 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.14 1.47 6.30 -52.49 -0.33 1.14 16 34 H 0.08 0.82 8.08 -51.93 -0.42 0.40 16 35 H 0.04 0.38 8.08 -51.93 -0.42 -0.04 16 36 H 0.34 3.87 8.72 -39.29 -0.34 3.53 16 37 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 39 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 42 H 0.13 0.87 8.06 -52.48 -0.42 0.45 16 43 H 0.13 0.70 6.30 -52.48 -0.33 0.37 16 44 H 0.09 0.36 7.66 -51.93 -0.40 -0.04 16 45 H 0.09 0.40 7.66 -51.93 -0.40 0.00 16 46 H 0.40 -0.14 8.83 -40.82 -0.36 -0.50 16 47 H 0.41 1.05 8.93 -40.82 -0.36 0.69 16 LS Contribution 408.29 15.07 6.15 6.15 Total: -1.00 -37.43 408.29 -7.64 -45.07 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: -6.65 Total: -1.45 kcal Atomic # 6 Polarization: -1.83 SS G_CDS: -2.15 Total: -3.98 kcal Atomic # 7 Polarization: -47.31 SS G_CDS: 1.08 Total: -46.23 kcal Atomic # 8 Polarization: -14.65 SS G_CDS: -1.05 Total: -15.70 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -37.43 -7.64 -45.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580947488.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.230 kcal (2) G-P(sol) polarization free energy of solvation -37.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds