Wall clock time and date at job start Wed Apr 1 2020 05:12:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42895 * 1
3 3 C 1.35997 * 117.00138 * 2 1
4 4 C 1.38560 * 120.07232 * 0.02562 * 3 2 1
5 5 C 1.38244 * 119.99927 * 179.97438 * 4 3 2
6 6 C 1.50704 * 119.92643 * 180.02562 * 5 4 3
7 7 N 1.46895 * 109.47030 * 89.99664 * 6 5 4
8 8 C 1.46906 * 110.99789 * 179.97438 * 7 6 5
9 9 C 1.53002 * 109.47053 * 179.97438 * 8 7 6
10 10 H 1.08998 * 109.46957 * 55.00131 * 9 8 7
11 11 C 1.47199 * 109.47124 * 295.00243 * 9 8 7
12 12 N 7.20329 * 64.26314 * 38.36026 * 2 1 3
13 13 C 1.53001 * 109.46964 * 175.00091 * 9 8 7
14 14 C 1.50699 * 109.46841 * 185.00248 * 13 9 8
15 15 H 1.07995 * 120.00262 * 359.97438 * 14 13 9
16 16 C 1.37881 * 119.99856 * 180.02562 * 14 13 9
17 17 N 1.31519 * 120.00103 * 359.97438 * 16 14 13
18 18 Si 1.86791 * 120.00124 * 180.02562 * 16 14 13
19 19 H 1.48503 * 109.47478 * 90.00031 * 18 16 14
20 20 H 1.48507 * 109.47246 * 210.00145 * 18 16 14
21 21 H 1.48501 * 109.47049 * 329.99845 * 18 16 14
22 22 C 1.38251 * 120.14507 * 0.26796 * 5 4 3
23 23 C 1.38247 * 120.14507 * 359.45575 * 22 5 4
24 24 C 1.38563 * 120.00005 * 0.54472 * 23 22 5
25 25 O 1.35994 * 120.07189 * 179.70146 * 24 23 22
26 26 C 1.42899 * 117.00202 * 0.02562 * 25 24 23
27 27 C 1.50696 * 109.47060 * 179.97438 * 26 25 24
28 28 N 1.34774 * 119.99978 * 180.02562 * 27 26 25
29 29 O 1.21282 * 119.99878 * 0.02562 * 27 26 25
30 30 H 1.09007 * 109.46933 * 299.99783 * 1 2 3
31 31 H 1.09002 * 109.47377 * 59.99361 * 1 2 3
32 32 H 1.08996 * 109.47408 * 179.97438 * 1 2 3
33 33 H 1.08002 * 120.00009 * 359.97438 * 4 3 2
34 34 H 1.08996 * 109.46908 * 329.99482 * 6 5 4
35 35 H 1.09002 * 109.46622 * 209.99656 * 6 5 4
36 36 H 1.00899 * 111.00672 * 56.04735 * 7 6 5
37 37 H 1.08992 * 109.47459 * 299.99826 * 8 7 6
38 38 H 1.09004 * 109.47040 * 59.99976 * 8 7 6
39 39 H 1.08995 * 109.47139 * 305.00028 * 13 9 8
40 40 H 1.09005 * 109.47062 * 65.00231 * 13 9 8
41 41 H 0.96994 * 120.00407 * 179.97438 * 17 16 14
42 42 H 1.08003 * 119.92925 * 179.70866 * 22 5 4
43 43 H 1.08004 * 119.99816 * 180.25145 * 23 22 5
44 44 H 1.08995 * 109.46810 * 299.99867 * 26 25 24
45 45 H 1.09001 * 109.46902 * 59.99683 * 26 25 24
46 46 H 0.97000 * 120.00154 * 0.02562 * 28 27 26
47 47 H 0.96995 * 120.00300 * 179.97438 * 28 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0464 1.2117 0.0000
4 6 1.2932 2.3748 0.0005
5 6 1.9225 3.6057 0.0011
6 6 1.1017 4.8696 0.0022
7 7 0.8355 5.2793 1.3876
8 6 0.0363 6.5113 1.4279
9 6 -0.2205 6.9052 2.8838
10 1 0.7300 6.9863 3.4112
11 6 -1.0543 5.8787 3.5302
12 7 -1.6990 5.0880 4.0269
13 6 -0.9446 8.2523 2.9276
14 6 -1.0883 8.6991 4.3596
15 1 -0.7021 8.0836 5.1586
16 6 -1.7136 9.8931 4.6498
17 7 -2.1843 10.6424 3.6768
18 14 -1.8911 10.4473 6.4248
19 1 -0.7087 11.2587 6.8107
20 1 -3.1215 11.2668 6.5669
21 1 -1.9844 9.2571 7.3079
22 6 3.3030 3.6798 -0.0045
23 6 4.0603 2.5232 0.0007
24 6 3.4359 1.2862 0.0001
25 8 4.1795 0.1476 -0.0009
26 6 5.6003 0.3005 -0.0008
27 6 6.2518 -1.0583 -0.0013
28 7 7.5956 -1.1614 -0.0008
29 8 5.5668 -2.0592 -0.0023
30 1 -0.3633 0.5138 0.8901
31 1 -0.3634 0.5139 -0.8899
32 1 -0.3634 -1.0276 -0.0005
33 1 0.2146 2.3196 0.0005
34 1 0.1573 4.6900 -0.5114
35 1 1.6501 5.6594 -0.5113
36 1 1.6955 5.3896 1.9037
37 1 0.5775 7.3122 0.9245
38 1 -0.9157 6.3434 0.9240
39 1 -0.3688 8.9925 2.3721
40 1 -1.9324 8.1486 2.4784
41 1 -2.6246 11.4823 3.8809
42 1 3.7909 4.6433 -0.0088
43 1 5.1386 2.5839 0.0004
44 1 5.9065 0.8510 -0.8902
45 1 5.9065 0.8495 0.8897
46 1 8.1434 -0.3609 0.0003
47 1 8.0150 -2.0360 -0.0008
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000580947488.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:12:59
Heat of formation + Delta-G solvation = -93.487654 kcal
Electronic energy + Delta-G solvation = -28768.201935 eV
Core-core repulsion = 24529.468132 eV
Total energy + Delta-G solvation = -4238.733803 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 347.168 amu
Computer time = 1.12 seconds
Orbital eigenvalues (eV)
-41.67035 -40.57295 -39.16634 -38.97486 -38.07045 -36.31989 -35.32762 -34.78378
-33.50133 -31.48851 -31.30593 -29.41689 -28.56557 -27.93920 -25.80558 -23.91016
-23.55756 -23.42355 -22.28367 -21.59915 -19.63373 -18.82494 -18.56222 -18.31158
-18.08776 -17.42915 -17.36625 -17.24301 -16.64420 -16.55568 -16.13685 -15.72465
-15.61547 -15.48848 -15.26487 -15.23593 -14.81755 -14.56934 -14.44349 -14.17029
-13.79505 -13.66681 -13.48876 -13.37015 -13.18017 -13.00182 -12.77959 -12.56537
-12.46051 -12.40397 -12.20831 -12.12162 -11.99076 -11.88136 -11.84320 -11.35650
-11.10994 -11.10389 -10.74439 -10.53015 -9.65887 -9.28553 -8.75825 -8.17994
-6.25630 0.31542 0.44123 1.40646 1.43308 1.49348 1.52065 1.74276
2.11050 2.17956 2.37811 2.42691 2.67793 2.85998 3.17521 3.34630
3.47979 3.77230 3.83943 3.97868 4.06629 4.13498 4.15586 4.21711
4.24908 4.33560 4.35768 4.43670 4.46661 4.63232 4.67277 4.73951
4.81542 4.86632 4.91961 5.06826 5.18799 5.29501 5.49920 5.65298
5.66014 5.72989 5.81492 5.82725 6.04677 6.06578 6.24268 6.38840
6.57520 6.61879 6.85820 6.96842 7.27568 7.42802 8.92635
Molecular weight = 347.17amu
Principal moments of inertia in cm(-1)
A = 0.017231 B = 0.001744 C = 0.001694
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1624.590622 B =16049.218095 C =16521.501550
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.022 3.978
2 O -0.335 6.335
3 C 0.072 3.928
4 C -0.158 4.158
5 C -0.081 4.081
6 C 0.105 3.895
7 N -0.700 5.700
8 C 0.079 3.921
9 C 0.019 3.981
10 H 0.121 0.879
11 C 0.265 3.735
12 N -0.519 5.519
13 C 0.037 3.963
14 C -0.538 4.538
15 H 0.053 0.947
16 C 0.012 3.988
17 N -0.922 5.922
18 Si 0.947 3.053
19 H -0.266 1.266
20 H -0.286 1.286
21 H -0.278 1.278
22 C -0.104 4.104
23 C -0.164 4.164
24 C 0.078 3.922
25 O -0.318 6.318
26 C 0.031 3.969
27 C 0.515 3.485
28 N -0.825 5.825
29 O -0.586 6.586
30 H 0.053 0.947
31 H 0.065 0.935
32 H 0.113 0.887
33 H 0.134 0.866
34 H 0.075 0.925
35 H 0.066 0.934
36 H 0.351 0.649
37 H 0.074 0.926
38 H 0.069 0.931
39 H 0.039 0.961
40 H 0.000 1.000
41 H 0.263 0.737
42 H 0.157 0.843
43 H 0.173 0.827
44 H 0.128 0.872
45 H 0.124 0.876
46 H 0.424 0.576
47 H 0.413 0.587
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 23.069 -15.592 -14.221 31.266
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.072 4.072
2 O -0.250 6.250
3 C 0.026 3.974
4 C -0.177 4.177
5 C -0.082 4.082
6 C -0.023 4.023
7 N -0.332 5.332
8 C -0.051 4.051
9 C -0.002 4.002
10 H 0.139 0.861
11 C -0.051 4.051
12 N -0.197 5.197
13 C -0.001 4.001
14 C -0.577 4.577
15 H 0.071 0.929
16 C -0.187 4.187
17 N -0.562 5.562
18 Si 0.773 3.227
19 H -0.191 1.191
20 H -0.211 1.211
21 H -0.203 1.203
22 C -0.122 4.122
23 C -0.182 4.182
24 C 0.033 3.967
25 O -0.232 6.232
26 C -0.047 4.047
27 C 0.299 3.701
28 N -0.392 5.392
29 O -0.465 6.465
30 H 0.072 0.928
31 H 0.084 0.916
32 H 0.132 0.868
33 H 0.151 0.849
34 H 0.093 0.907
35 H 0.084 0.916
36 H 0.170 0.830
37 H 0.092 0.908
38 H 0.087 0.913
39 H 0.057 0.943
40 H 0.018 0.982
41 H 0.072 0.928
42 H 0.175 0.825
43 H 0.190 0.810
44 H 0.146 0.854
45 H 0.142 0.858
46 H 0.256 0.744
47 H 0.246 0.754
Dipole moment (debyes) X Y Z Total
from point charges 20.897 -17.938 -13.444 30.646
hybrid contribution 0.383 1.379 0.677 1.584
sum 21.280 -16.559 -12.767 29.833
Atomic orbital electron populations
1.23235 0.77110 1.05069 1.01805 1.86149 1.22710 1.26763 1.89334
1.18625 0.89982 0.85446 1.03314 1.21056 1.00199 0.91080 1.05383
1.19657 0.94329 0.93764 1.00439 1.20813 0.98829 0.93176 0.89466
1.60449 1.24758 1.34121 1.13901 1.21881 0.98819 0.91199 0.93156
1.19219 0.96817 0.89131 0.95081 0.86146 1.29408 0.92366 0.91911
0.91376 1.80933 1.12232 1.14549 1.11941 1.18996 0.95109 0.89990
0.96039 1.21567 1.37387 1.04865 0.93839 0.92891 1.25691 0.95302
0.97061 1.00692 1.70024 1.39539 1.13533 1.33113 0.85716 0.77941
0.78145 0.80879 1.19071 1.21143 1.20320 1.21120 0.92344 0.99260
0.99512 1.21378 1.01994 0.89525 1.05330 1.18526 0.88036 0.86547
1.03623 1.86200 1.18278 1.29121 1.89580 1.22791 0.79489 0.95466
1.06920 1.20515 0.83808 0.90602 0.75177 1.43467 1.05088 1.14320
1.76281 1.90806 1.64538 1.40452 1.50748 0.92807 0.91596 0.86831
0.84852 0.90703 0.91600 0.82978 0.90783 0.91250 0.94276 0.98175
0.92768 0.82500 0.81016 0.85427 0.85802 0.74388 0.75426
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.45 9.81 113.37 1.11 1.56 16
2 O -0.34 -9.46 10.28 -79.65 -0.82 -10.28 16
3 C 0.07 1.84 6.70 22.57 0.15 2.00 16
4 C -0.16 -3.60 8.69 22.35 0.19 -3.40 16
5 C -0.08 -1.53 5.39 -19.86 -0.11 -1.63 16
6 C 0.11 1.88 5.81 85.56 0.50 2.38 16
7 N -0.70 -15.47 6.19 -517.93 -3.21 -18.68 16
8 C 0.08 2.01 5.05 86.30 0.44 2.45 16
9 C 0.02 0.65 2.35 -12.60 -0.03 0.62 16
10 H 0.12 3.61 8.14 -2.39 -0.02 3.59 16
11 C 0.27 10.82 13.66 89.46 1.22 12.04 16
12 N -0.52 -23.58 18.53 19.99 0.37 -23.21 16
13 C 0.04 1.67 4.42 29.85 0.13 1.80 16
14 C -0.54 -28.01 8.60 25.60 0.22 -27.79 16
15 H 0.05 2.74 7.59 -2.91 -0.02 2.72 16
16 C 0.01 0.62 5.46 84.65 0.46 1.08 16
17 N -0.92 -52.13 13.29 21.45 0.28 -51.85 16
18 Si 0.95 43.03 29.54 68.60 2.03 45.05 16
19 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16
20 H -0.29 -12.88 7.11 99.48 0.71 -12.18 16
21 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16
22 C -0.10 -1.48 9.69 22.27 0.22 -1.26 16
23 C -0.16 -2.31 9.04 22.35 0.20 -2.11 16
24 C 0.08 1.74 6.70 22.57 0.15 1.89 16
25 O -0.32 -7.62 9.45 -67.07 -0.63 -8.25 16
26 C 0.03 0.35 5.22 71.23 0.37 0.73 16
27 C 0.51 8.01 8.18 87.66 0.72 8.73 16
28 N -0.82 -3.60 8.87 -173.54 -1.54 -5.14 16
29 O -0.59 -17.08 17.34 16.00 0.28 -16.80 16
30 H 0.05 1.09 7.66 -2.38 -0.02 1.08 16
31 H 0.07 1.12 7.66 -2.39 -0.02 1.11 16
32 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16
33 H 0.13 2.97 6.30 -2.91 -0.02 2.95 16
34 H 0.07 1.42 8.08 -2.39 -0.02 1.40 16
35 H 0.07 0.90 8.08 -2.39 -0.02 0.88 16
36 H 0.35 6.77 8.72 -89.69 -0.78 5.99 16
37 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16
38 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16
39 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16
40 H 0.00 -0.01 8.14 -2.38 -0.02 -0.03 16
41 H 0.26 14.17 8.31 -92.71 -0.77 13.40 16
42 H 0.16 1.30 8.06 -2.91 -0.02 1.28 16
43 H 0.17 0.91 6.30 -2.91 -0.02 0.89 16
44 H 0.13 0.50 7.66 -2.39 -0.02 0.48 16
45 H 0.12 0.61 7.66 -2.39 -0.02 0.59 16
46 H 0.42 -1.70 8.83 -92.71 -0.82 -2.52 16
47 H 0.41 1.49 8.93 -92.71 -0.83 0.66 16
Total: -1.00 -84.86 408.29 1.32 -83.54
By element:
Atomic # 1 Polarization: 7.92 SS G_CDS: -1.39 Total: 6.53 kcal
Atomic # 6 Polarization: -6.87 SS G_CDS: 5.95 Total: -0.93 kcal
Atomic # 7 Polarization: -94.78 SS G_CDS: -4.09 Total: -98.87 kcal
Atomic # 8 Polarization: -34.15 SS G_CDS: -1.18 Total: -35.32 kcal
Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.05 kcal
Total: -84.86 1.32 -83.54 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000580947488.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -9.951 kcal
(2) G-P(sol) polarization free energy of solvation -84.855 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.806 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.318 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.537 kcal
(6) G-S(sol) free energy of system = (1) + (5) -93.488 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.12 seconds