Wall clock time and date at job start Wed Apr 1 2020 05:12:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35997 * 117.00138 * 2 1 4 4 C 1.38560 * 120.07232 * 0.02562 * 3 2 1 5 5 C 1.38244 * 119.99927 * 179.97438 * 4 3 2 6 6 C 1.50704 * 119.92643 * 180.02562 * 5 4 3 7 7 N 1.46895 * 109.47030 * 89.99664 * 6 5 4 8 8 C 1.46906 * 110.99789 * 179.97438 * 7 6 5 9 9 C 1.53002 * 109.47053 * 179.97438 * 8 7 6 10 10 H 1.08998 * 109.46957 * 55.00131 * 9 8 7 11 11 C 1.47199 * 109.47124 * 295.00243 * 9 8 7 12 12 N 7.20329 * 64.26314 * 38.36026 * 2 1 3 13 13 C 1.53001 * 109.46964 * 175.00091 * 9 8 7 14 14 C 1.50699 * 109.46841 * 185.00248 * 13 9 8 15 15 H 1.07995 * 120.00262 * 359.97438 * 14 13 9 16 16 C 1.37881 * 119.99856 * 180.02562 * 14 13 9 17 17 N 1.31519 * 120.00103 * 359.97438 * 16 14 13 18 18 Si 1.86791 * 120.00124 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47478 * 90.00031 * 18 16 14 20 20 H 1.48507 * 109.47246 * 210.00145 * 18 16 14 21 21 H 1.48501 * 109.47049 * 329.99845 * 18 16 14 22 22 C 1.38251 * 120.14507 * 0.26796 * 5 4 3 23 23 C 1.38247 * 120.14507 * 359.45575 * 22 5 4 24 24 C 1.38563 * 120.00005 * 0.54472 * 23 22 5 25 25 O 1.35994 * 120.07189 * 179.70146 * 24 23 22 26 26 C 1.42899 * 117.00202 * 0.02562 * 25 24 23 27 27 C 1.50696 * 109.47060 * 179.97438 * 26 25 24 28 28 N 1.34774 * 119.99978 * 180.02562 * 27 26 25 29 29 O 1.21282 * 119.99878 * 0.02562 * 27 26 25 30 30 H 1.09007 * 109.46933 * 299.99783 * 1 2 3 31 31 H 1.09002 * 109.47377 * 59.99361 * 1 2 3 32 32 H 1.08996 * 109.47408 * 179.97438 * 1 2 3 33 33 H 1.08002 * 120.00009 * 359.97438 * 4 3 2 34 34 H 1.08996 * 109.46908 * 329.99482 * 6 5 4 35 35 H 1.09002 * 109.46622 * 209.99656 * 6 5 4 36 36 H 1.00899 * 111.00672 * 56.04735 * 7 6 5 37 37 H 1.08992 * 109.47459 * 299.99826 * 8 7 6 38 38 H 1.09004 * 109.47040 * 59.99976 * 8 7 6 39 39 H 1.08995 * 109.47139 * 305.00028 * 13 9 8 40 40 H 1.09005 * 109.47062 * 65.00231 * 13 9 8 41 41 H 0.96994 * 120.00407 * 179.97438 * 17 16 14 42 42 H 1.08003 * 119.92925 * 179.70866 * 22 5 4 43 43 H 1.08004 * 119.99816 * 180.25145 * 23 22 5 44 44 H 1.08995 * 109.46810 * 299.99867 * 26 25 24 45 45 H 1.09001 * 109.46902 * 59.99683 * 26 25 24 46 46 H 0.97000 * 120.00154 * 0.02562 * 28 27 26 47 47 H 0.96995 * 120.00300 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2932 2.3748 0.0005 5 6 1.9225 3.6057 0.0011 6 6 1.1017 4.8696 0.0022 7 7 0.8355 5.2793 1.3876 8 6 0.0363 6.5113 1.4279 9 6 -0.2205 6.9052 2.8838 10 1 0.7300 6.9863 3.4112 11 6 -1.0543 5.8787 3.5302 12 7 -1.6990 5.0880 4.0269 13 6 -0.9446 8.2523 2.9276 14 6 -1.0883 8.6991 4.3596 15 1 -0.7021 8.0836 5.1586 16 6 -1.7136 9.8931 4.6498 17 7 -2.1843 10.6424 3.6768 18 14 -1.8911 10.4473 6.4248 19 1 -0.7087 11.2587 6.8107 20 1 -3.1215 11.2668 6.5669 21 1 -1.9844 9.2571 7.3079 22 6 3.3030 3.6798 -0.0045 23 6 4.0603 2.5232 0.0007 24 6 3.4359 1.2862 0.0001 25 8 4.1795 0.1476 -0.0009 26 6 5.6003 0.3005 -0.0008 27 6 6.2518 -1.0583 -0.0013 28 7 7.5956 -1.1614 -0.0008 29 8 5.5668 -2.0592 -0.0023 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 0.2146 2.3196 0.0005 34 1 0.1573 4.6900 -0.5114 35 1 1.6501 5.6594 -0.5113 36 1 1.6955 5.3896 1.9037 37 1 0.5775 7.3122 0.9245 38 1 -0.9157 6.3434 0.9240 39 1 -0.3688 8.9925 2.3721 40 1 -1.9324 8.1486 2.4784 41 1 -2.6246 11.4823 3.8809 42 1 3.7909 4.6433 -0.0088 43 1 5.1386 2.5839 0.0004 44 1 5.9065 0.8510 -0.8902 45 1 5.9065 0.8495 0.8897 46 1 8.1434 -0.3609 0.0003 47 1 8.0150 -2.0360 -0.0008 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000580947488.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:12:59 Heat of formation + Delta-G solvation = -93.487654 kcal Electronic energy + Delta-G solvation = -28768.201935 eV Core-core repulsion = 24529.468132 eV Total energy + Delta-G solvation = -4238.733803 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.67035 -40.57295 -39.16634 -38.97486 -38.07045 -36.31989 -35.32762 -34.78378 -33.50133 -31.48851 -31.30593 -29.41689 -28.56557 -27.93920 -25.80558 -23.91016 -23.55756 -23.42355 -22.28367 -21.59915 -19.63373 -18.82494 -18.56222 -18.31158 -18.08776 -17.42915 -17.36625 -17.24301 -16.64420 -16.55568 -16.13685 -15.72465 -15.61547 -15.48848 -15.26487 -15.23593 -14.81755 -14.56934 -14.44349 -14.17029 -13.79505 -13.66681 -13.48876 -13.37015 -13.18017 -13.00182 -12.77959 -12.56537 -12.46051 -12.40397 -12.20831 -12.12162 -11.99076 -11.88136 -11.84320 -11.35650 -11.10994 -11.10389 -10.74439 -10.53015 -9.65887 -9.28553 -8.75825 -8.17994 -6.25630 0.31542 0.44123 1.40646 1.43308 1.49348 1.52065 1.74276 2.11050 2.17956 2.37811 2.42691 2.67793 2.85998 3.17521 3.34630 3.47979 3.77230 3.83943 3.97868 4.06629 4.13498 4.15586 4.21711 4.24908 4.33560 4.35768 4.43670 4.46661 4.63232 4.67277 4.73951 4.81542 4.86632 4.91961 5.06826 5.18799 5.29501 5.49920 5.65298 5.66014 5.72989 5.81492 5.82725 6.04677 6.06578 6.24268 6.38840 6.57520 6.61879 6.85820 6.96842 7.27568 7.42802 8.92635 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.017231 B = 0.001744 C = 0.001694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.590622 B =16049.218095 C =16521.501550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.335 6.335 3 C 0.072 3.928 4 C -0.158 4.158 5 C -0.081 4.081 6 C 0.105 3.895 7 N -0.700 5.700 8 C 0.079 3.921 9 C 0.019 3.981 10 H 0.121 0.879 11 C 0.265 3.735 12 N -0.519 5.519 13 C 0.037 3.963 14 C -0.538 4.538 15 H 0.053 0.947 16 C 0.012 3.988 17 N -0.922 5.922 18 Si 0.947 3.053 19 H -0.266 1.266 20 H -0.286 1.286 21 H -0.278 1.278 22 C -0.104 4.104 23 C -0.164 4.164 24 C 0.078 3.922 25 O -0.318 6.318 26 C 0.031 3.969 27 C 0.515 3.485 28 N -0.825 5.825 29 O -0.586 6.586 30 H 0.053 0.947 31 H 0.065 0.935 32 H 0.113 0.887 33 H 0.134 0.866 34 H 0.075 0.925 35 H 0.066 0.934 36 H 0.351 0.649 37 H 0.074 0.926 38 H 0.069 0.931 39 H 0.039 0.961 40 H 0.000 1.000 41 H 0.263 0.737 42 H 0.157 0.843 43 H 0.173 0.827 44 H 0.128 0.872 45 H 0.124 0.876 46 H 0.424 0.576 47 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.069 -15.592 -14.221 31.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.250 6.250 3 C 0.026 3.974 4 C -0.177 4.177 5 C -0.082 4.082 6 C -0.023 4.023 7 N -0.332 5.332 8 C -0.051 4.051 9 C -0.002 4.002 10 H 0.139 0.861 11 C -0.051 4.051 12 N -0.197 5.197 13 C -0.001 4.001 14 C -0.577 4.577 15 H 0.071 0.929 16 C -0.187 4.187 17 N -0.562 5.562 18 Si 0.773 3.227 19 H -0.191 1.191 20 H -0.211 1.211 21 H -0.203 1.203 22 C -0.122 4.122 23 C -0.182 4.182 24 C 0.033 3.967 25 O -0.232 6.232 26 C -0.047 4.047 27 C 0.299 3.701 28 N -0.392 5.392 29 O -0.465 6.465 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.132 0.868 33 H 0.151 0.849 34 H 0.093 0.907 35 H 0.084 0.916 36 H 0.170 0.830 37 H 0.092 0.908 38 H 0.087 0.913 39 H 0.057 0.943 40 H 0.018 0.982 41 H 0.072 0.928 42 H 0.175 0.825 43 H 0.190 0.810 44 H 0.146 0.854 45 H 0.142 0.858 46 H 0.256 0.744 47 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 20.897 -17.938 -13.444 30.646 hybrid contribution 0.383 1.379 0.677 1.584 sum 21.280 -16.559 -12.767 29.833 Atomic orbital electron populations 1.23235 0.77110 1.05069 1.01805 1.86149 1.22710 1.26763 1.89334 1.18625 0.89982 0.85446 1.03314 1.21056 1.00199 0.91080 1.05383 1.19657 0.94329 0.93764 1.00439 1.20813 0.98829 0.93176 0.89466 1.60449 1.24758 1.34121 1.13901 1.21881 0.98819 0.91199 0.93156 1.19219 0.96817 0.89131 0.95081 0.86146 1.29408 0.92366 0.91911 0.91376 1.80933 1.12232 1.14549 1.11941 1.18996 0.95109 0.89990 0.96039 1.21567 1.37387 1.04865 0.93839 0.92891 1.25691 0.95302 0.97061 1.00692 1.70024 1.39539 1.13533 1.33113 0.85716 0.77941 0.78145 0.80879 1.19071 1.21143 1.20320 1.21120 0.92344 0.99260 0.99512 1.21378 1.01994 0.89525 1.05330 1.18526 0.88036 0.86547 1.03623 1.86200 1.18278 1.29121 1.89580 1.22791 0.79489 0.95466 1.06920 1.20515 0.83808 0.90602 0.75177 1.43467 1.05088 1.14320 1.76281 1.90806 1.64538 1.40452 1.50748 0.92807 0.91596 0.86831 0.84852 0.90703 0.91600 0.82978 0.90783 0.91250 0.94276 0.98175 0.92768 0.82500 0.81016 0.85427 0.85802 0.74388 0.75426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.45 9.81 113.37 1.11 1.56 16 2 O -0.34 -9.46 10.28 -79.65 -0.82 -10.28 16 3 C 0.07 1.84 6.70 22.57 0.15 2.00 16 4 C -0.16 -3.60 8.69 22.35 0.19 -3.40 16 5 C -0.08 -1.53 5.39 -19.86 -0.11 -1.63 16 6 C 0.11 1.88 5.81 85.56 0.50 2.38 16 7 N -0.70 -15.47 6.19 -517.93 -3.21 -18.68 16 8 C 0.08 2.01 5.05 86.30 0.44 2.45 16 9 C 0.02 0.65 2.35 -12.60 -0.03 0.62 16 10 H 0.12 3.61 8.14 -2.39 -0.02 3.59 16 11 C 0.27 10.82 13.66 89.46 1.22 12.04 16 12 N -0.52 -23.58 18.53 19.99 0.37 -23.21 16 13 C 0.04 1.67 4.42 29.85 0.13 1.80 16 14 C -0.54 -28.01 8.60 25.60 0.22 -27.79 16 15 H 0.05 2.74 7.59 -2.91 -0.02 2.72 16 16 C 0.01 0.62 5.46 84.65 0.46 1.08 16 17 N -0.92 -52.13 13.29 21.45 0.28 -51.85 16 18 Si 0.95 43.03 29.54 68.60 2.03 45.05 16 19 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 20 H -0.29 -12.88 7.11 99.48 0.71 -12.18 16 21 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 22 C -0.10 -1.48 9.69 22.27 0.22 -1.26 16 23 C -0.16 -2.31 9.04 22.35 0.20 -2.11 16 24 C 0.08 1.74 6.70 22.57 0.15 1.89 16 25 O -0.32 -7.62 9.45 -67.07 -0.63 -8.25 16 26 C 0.03 0.35 5.22 71.23 0.37 0.73 16 27 C 0.51 8.01 8.18 87.66 0.72 8.73 16 28 N -0.82 -3.60 8.87 -173.54 -1.54 -5.14 16 29 O -0.59 -17.08 17.34 16.00 0.28 -16.80 16 30 H 0.05 1.09 7.66 -2.38 -0.02 1.08 16 31 H 0.07 1.12 7.66 -2.39 -0.02 1.11 16 32 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.13 2.97 6.30 -2.91 -0.02 2.95 16 34 H 0.07 1.42 8.08 -2.39 -0.02 1.40 16 35 H 0.07 0.90 8.08 -2.39 -0.02 0.88 16 36 H 0.35 6.77 8.72 -89.69 -0.78 5.99 16 37 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 39 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.00 -0.01 8.14 -2.38 -0.02 -0.03 16 41 H 0.26 14.17 8.31 -92.71 -0.77 13.40 16 42 H 0.16 1.30 8.06 -2.91 -0.02 1.28 16 43 H 0.17 0.91 6.30 -2.91 -0.02 0.89 16 44 H 0.13 0.50 7.66 -2.39 -0.02 0.48 16 45 H 0.12 0.61 7.66 -2.39 -0.02 0.59 16 46 H 0.42 -1.70 8.83 -92.71 -0.82 -2.52 16 47 H 0.41 1.49 8.93 -92.71 -0.83 0.66 16 Total: -1.00 -84.86 408.29 1.32 -83.54 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -1.39 Total: 6.53 kcal Atomic # 6 Polarization: -6.87 SS G_CDS: 5.95 Total: -0.93 kcal Atomic # 7 Polarization: -94.78 SS G_CDS: -4.09 Total: -98.87 kcal Atomic # 8 Polarization: -34.15 SS G_CDS: -1.18 Total: -35.32 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.05 kcal Total: -84.86 1.32 -83.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580947488.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.951 kcal (2) G-P(sol) polarization free energy of solvation -84.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds