Wall clock time and date at job start Wed Apr 1 2020 05:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35958 * 116.99790 * 2 1 4 4 C 1.38558 * 120.08814 * 359.97438 * 3 2 1 5 5 C 1.38239 * 120.01739 * 180.02562 * 4 3 2 6 6 C 1.38300 * 120.19748 * 359.96319 * 5 4 3 7 7 C 1.38163 * 120.17571 * 0.02562 * 6 5 4 8 8 C 1.38803 * 119.97750 * 359.97438 * 7 6 5 9 9 N 1.39882 * 120.09681 * 179.73048 * 8 7 6 10 10 C 1.34777 * 119.99950 * 24.28491 * 9 8 7 11 11 O 1.21387 * 119.99949 * 5.37068 * 10 9 8 12 12 C 1.49330 * 119.99909 * 185.36898 * 10 9 8 13 13 O 1.21369 * 119.99700 * 6.88299 * 12 10 9 14 14 N 1.34773 * 120.00318 * 186.88093 * 12 10 9 15 15 C 1.47085 * 120.87971 * 356.97065 * 14 12 10 16 16 C 1.53702 * 108.27732 * 128.75200 * 15 14 12 17 17 N 1.46903 * 109.25313 * 54.08245 * 16 15 14 18 18 C 1.46891 * 110.99710 * 172.60572 * 17 16 15 19 19 C 1.50705 * 109.47689 * 294.30415 * 18 17 16 20 20 H 1.08001 * 119.99444 * 0.02562 * 19 18 17 21 21 C 1.37873 * 120.00585 * 179.97438 * 19 18 17 22 22 N 1.31513 * 119.99688 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00200 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47133 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.46934 * 120.00063 * 23 21 19 26 26 H 1.48495 * 109.47214 * 240.00153 * 23 21 19 27 27 C 1.46897 * 111.26898 * 296.75802 * 17 16 15 28 28 C 1.47080 * 120.88667 * 177.24715 * 14 12 10 29 29 H 1.08998 * 109.47513 * 299.99920 * 1 2 3 30 30 H 1.09004 * 109.47470 * 60.00297 * 1 2 3 31 31 H 1.09008 * 109.46840 * 180.02562 * 1 2 3 32 32 H 1.07999 * 119.98755 * 0.02562 * 4 3 2 33 33 H 1.08002 * 119.90034 * 179.97438 * 5 4 3 34 34 H 1.07998 * 119.90985 * 180.02562 * 6 5 4 35 35 H 1.07997 * 120.01391 * 179.97438 * 7 6 5 36 36 H 0.96995 * 119.99820 * 204.28815 * 9 8 7 37 37 H 1.08994 * 109.63249 * 248.52286 * 15 14 12 38 38 H 1.09008 * 109.62534 * 9.10623 * 15 14 12 39 39 H 1.08993 * 109.64796 * 294.08324 * 16 15 14 40 40 H 1.08995 * 109.42268 * 173.94880 * 16 15 14 41 41 H 1.08998 * 109.47387 * 54.30551 * 18 17 16 42 42 H 1.09001 * 109.47358 * 174.30619 * 18 17 16 43 43 H 0.96998 * 120.00043 * 179.97438 * 22 21 19 44 44 H 1.08994 * 109.49257 * 303.14167 * 27 17 16 45 45 H 1.09005 * 109.48770 * 183.06276 * 27 17 16 46 46 H 1.09005 * 109.62443 * 350.90138 * 28 14 12 47 47 H 1.09004 * 109.62702 * 111.47612 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2933 2.3746 -0.0005 5 6 1.9223 3.6056 -0.0011 6 6 3.3033 3.6810 -0.0003 7 6 4.0619 2.5263 0.0005 8 6 3.4379 1.2865 0.0010 9 7 4.2035 0.1158 -0.0039 10 6 5.4647 0.1334 0.4711 11 8 5.9030 1.1384 0.9920 12 6 6.3227 -1.0834 0.3566 13 8 5.9316 -2.0446 -0.2728 14 7 7.5313 -1.1142 0.9521 15 6 8.0525 0.0628 1.6637 16 6 8.5007 -0.3806 3.0654 17 7 9.4451 -1.4990 2.9408 18 6 10.0325 -1.8395 4.2434 19 6 10.8842 -0.6934 4.7255 20 1 10.9791 0.1988 4.1245 21 6 11.5412 -0.7836 5.9343 22 7 11.4251 -1.8699 6.6663 23 14 12.5974 0.6367 6.5315 24 1 12.5634 1.7337 5.5311 25 1 12.0714 1.1336 7.8282 26 1 13.9965 0.1723 6.7101 27 6 8.8050 -2.6713 2.3293 28 6 8.3667 -2.3237 0.9027 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0278 0.0005 32 1 0.2147 2.3195 -0.0005 33 1 1.3336 4.5110 -0.0019 34 1 3.7899 4.6452 -0.0003 35 1 5.1401 2.5883 0.0006 36 1 3.8268 -0.7086 -0.3492 37 1 8.9013 0.4746 1.1177 38 1 7.2687 0.8155 1.7495 39 1 7.6336 -0.6995 3.6436 40 1 8.9887 0.4529 3.5705 41 1 9.2359 -2.0280 4.9631 42 1 10.6491 -2.7326 4.1416 43 1 11.8876 -1.9335 7.5166 44 1 7.9337 -2.9583 2.9178 45 1 9.5138 -3.4989 2.3005 46 1 7.7908 -3.1496 0.4851 47 1 9.2452 -2.1369 0.2849 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602080603.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:05 Heat of formation + Delta-G solvation = -33.979610 kcal Electronic energy + Delta-G solvation = -30415.338217 eV Core-core repulsion = 26179.184876 eV Total energy + Delta-G solvation = -4236.153341 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.49607 -40.34737 -38.95767 -37.64521 -37.54142 -35.45487 -34.22523 -32.40224 -30.82434 -30.56652 -30.17597 -28.42377 -27.65304 -26.15694 -24.63340 -23.43470 -22.79335 -22.42975 -21.58363 -20.60661 -19.56469 -18.64960 -17.77401 -17.50179 -16.66723 -16.39776 -16.33158 -16.14565 -15.97166 -15.36324 -15.04838 -14.78663 -14.62366 -14.50862 -14.33858 -14.08537 -13.79552 -13.74924 -13.52017 -13.15322 -12.89002 -12.63311 -12.34542 -11.99628 -11.94605 -11.67695 -11.51085 -11.36791 -11.26529 -11.05321 -10.90524 -10.83112 -10.72299 -10.61044 -10.50352 -9.91536 -9.27017 -9.10271 -8.85970 -8.62470 -8.45378 -8.15117 -7.31641 -6.04964 -4.06613 0.73267 1.07124 1.48505 2.12716 2.81427 3.03904 3.30423 3.37485 3.38160 3.42796 3.50229 4.13110 4.40784 4.44600 4.53448 4.74403 4.75885 4.83082 4.89975 5.07709 5.09389 5.16278 5.28872 5.30433 5.39791 5.42564 5.60443 5.66183 5.71031 5.83820 5.86522 5.93319 5.98401 6.20069 6.23393 6.30585 6.43696 6.46425 6.54295 6.62488 6.82700 6.98482 7.22672 7.28087 7.32485 7.58178 7.76138 7.86938 8.02820 8.13394 8.49050 9.01033 9.57962 11.05975 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.014966 B = 0.002343 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.506738 B =11946.685476 C =12941.207803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.319 6.319 3 C 0.101 3.899 4 C -0.189 4.189 5 C -0.097 4.097 6 C -0.133 4.133 7 C -0.094 4.094 8 C 0.118 3.882 9 N -0.632 5.632 10 C 0.512 3.488 11 O -0.488 6.488 12 C 0.506 3.494 13 O -0.532 6.532 14 N -0.566 5.566 15 C 0.054 3.946 16 C 0.052 3.948 17 N -0.537 5.537 18 C 0.193 3.807 19 C -0.508 4.508 20 H 0.065 0.935 21 C 0.055 3.945 22 N -0.898 5.898 23 Si 0.898 3.102 24 H -0.271 1.271 25 H -0.285 1.285 26 H -0.284 1.284 27 C 0.041 3.959 28 C 0.114 3.886 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.101 0.899 32 H 0.132 0.868 33 H 0.126 0.874 34 H 0.130 0.870 35 H 0.156 0.844 36 H 0.426 0.574 37 H 0.076 0.924 38 H 0.149 0.851 39 H 0.023 0.977 40 H 0.098 0.902 41 H -0.009 1.009 42 H 0.031 0.969 43 H 0.261 0.739 44 H 0.027 0.973 45 H 0.084 0.916 46 H 0.090 0.910 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.200 7.090 -16.078 28.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.233 6.233 3 C 0.054 3.946 4 C -0.208 4.208 5 C -0.116 4.116 6 C -0.152 4.152 7 C -0.114 4.114 8 C 0.023 3.977 9 N -0.277 5.277 10 C 0.296 3.704 11 O -0.364 6.364 12 C 0.287 3.713 13 O -0.411 6.411 14 N -0.298 5.298 15 C -0.067 4.067 16 C -0.077 4.077 17 N -0.263 5.263 18 C 0.068 3.932 19 C -0.546 4.546 20 H 0.083 0.917 21 C -0.147 4.147 22 N -0.538 5.538 23 Si 0.726 3.274 24 H -0.196 1.196 25 H -0.211 1.211 26 H -0.210 1.210 27 C -0.088 4.088 28 C -0.008 4.008 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.120 0.880 32 H 0.150 0.850 33 H 0.144 0.856 34 H 0.148 0.852 35 H 0.173 0.827 36 H 0.265 0.735 37 H 0.094 0.906 38 H 0.165 0.835 39 H 0.041 0.959 40 H 0.116 0.884 41 H 0.009 0.991 42 H 0.050 0.950 43 H 0.070 0.930 44 H 0.045 0.955 45 H 0.102 0.898 46 H 0.109 0.891 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -21.499 7.097 -16.175 27.825 hybrid contribution -0.411 0.036 0.974 1.058 sum -21.910 7.133 -15.201 27.604 Atomic orbital electron populations 1.23072 0.77848 1.04189 1.01402 1.86029 1.21828 1.26359 1.89042 1.18690 0.90163 0.85226 1.00487 1.21046 0.99913 0.91730 1.08160 1.20980 0.94769 0.96964 0.98876 1.21028 0.93596 0.98350 1.02189 1.21405 1.02168 0.89562 0.98302 1.17142 0.86842 0.86893 1.06834 1.43013 1.12620 1.12314 1.59770 1.20496 0.82458 0.89300 0.78121 1.90352 1.71005 1.34178 1.40825 1.19609 0.82819 0.87345 0.81515 1.90751 1.72716 1.36110 1.41492 1.48185 1.15344 1.16085 1.50193 1.23626 1.02484 0.87859 0.92750 1.22425 0.94249 0.96696 0.94284 1.62128 1.31056 1.04948 1.28134 1.19733 0.93616 0.97436 0.82411 1.21181 1.28136 1.01879 1.03427 0.91699 1.24999 0.96879 0.96107 0.96666 1.69968 1.43560 1.27110 1.13141 0.86435 0.80058 0.82323 0.78579 1.19578 1.21127 1.21022 1.22395 0.97807 0.95152 0.93457 1.21977 0.94071 0.86471 0.98309 0.92502 0.92540 0.88030 0.85004 0.85567 0.85191 0.82654 0.73532 0.90611 0.83494 0.95871 0.88364 0.99119 0.95044 0.92951 0.95483 0.89754 0.89126 0.90115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.81 101.05 0.99 1.15 16 2 O -0.32 -2.99 9.90 -19.61 -0.19 -3.18 16 3 C 0.10 1.02 6.70 -39.04 -0.26 0.76 16 4 C -0.19 -1.53 9.04 -39.46 -0.36 -1.89 16 5 C -0.10 -0.75 10.04 -39.56 -0.40 -1.15 16 6 C -0.13 -1.18 10.04 -39.59 -0.40 -1.57 16 7 C -0.09 -1.04 8.73 -39.40 -0.34 -1.38 16 8 C 0.12 1.36 6.45 -83.55 -0.54 0.82 16 9 N -0.63 -7.60 5.27 -10.19 -0.05 -7.65 16 10 C 0.51 7.02 7.62 -11.64 -0.09 6.94 16 11 O -0.49 -7.05 10.16 5.46 0.06 -7.00 16 12 C 0.51 7.66 7.76 -11.64 -0.09 7.57 16 13 O -0.53 -8.68 15.97 5.48 0.09 -8.60 16 14 N -0.57 -8.91 3.00 -172.73 -0.52 -9.43 16 15 C 0.05 0.86 6.41 -3.36 -0.02 0.84 16 16 C 0.05 1.02 5.47 -3.46 -0.02 1.00 16 17 N -0.54 -11.41 4.62 -235.48 -1.09 -12.50 16 18 C 0.19 4.97 4.72 -4.98 -0.02 4.95 16 19 C -0.51 -14.04 8.41 -34.44 -0.29 -14.33 16 20 H 0.06 1.77 7.13 -52.49 -0.37 1.40 16 21 C 0.05 1.54 5.46 -17.82 -0.10 1.45 16 22 N -0.90 -26.58 13.29 55.43 0.74 -25.84 16 23 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 24 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 25 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 26 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 27 C 0.04 0.74 5.62 -3.71 -0.02 0.72 16 28 C 0.11 1.75 6.59 -3.61 -0.02 1.73 16 29 H 0.06 0.26 7.66 -51.93 -0.40 -0.14 16 30 H 0.06 0.23 7.66 -51.93 -0.40 -0.17 16 31 H 0.10 0.38 8.14 -51.92 -0.42 -0.04 16 32 H 0.13 0.73 6.30 -52.49 -0.33 0.40 16 33 H 0.13 0.66 8.06 -52.49 -0.42 0.23 16 34 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 35 H 0.16 1.82 5.73 -52.49 -0.30 1.52 16 36 H 0.43 4.78 7.84 -40.82 -0.32 4.46 16 37 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.15 2.30 3.87 -56.68 -0.22 2.08 16 39 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.10 2.03 6.67 -51.93 -0.35 1.69 16 41 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 42 H 0.03 0.86 7.97 -51.93 -0.41 0.45 16 43 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 44 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.08 1.44 7.99 -51.93 -0.41 1.03 16 46 H 0.09 1.31 7.08 -51.93 -0.37 0.95 16 47 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 LS Contribution 381.10 15.07 5.74 5.74 Total: -1.00 -32.20 381.10 -8.63 -40.83 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -6.40 Total: 3.58 kcal Atomic # 6 Polarization: 9.57 SS G_CDS: -1.98 Total: 7.59 kcal Atomic # 7 Polarization: -54.50 SS G_CDS: -0.92 Total: -55.43 kcal Atomic # 8 Polarization: -18.72 SS G_CDS: -0.05 Total: -18.77 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.20 -8.63 -40.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602080603.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.848 kcal (2) G-P(sol) polarization free energy of solvation -32.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds