Wall clock time and date at job start Wed Apr 1 2020 05:10:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35958 * 116.99790 * 2 1 4 4 C 1.38558 * 120.08814 * 359.97438 * 3 2 1 5 5 C 1.38239 * 120.01739 * 180.02562 * 4 3 2 6 6 C 1.38300 * 120.19748 * 359.96319 * 5 4 3 7 7 C 1.38163 * 120.17571 * 0.02562 * 6 5 4 8 8 C 1.38803 * 119.97750 * 359.97438 * 7 6 5 9 9 N 1.39882 * 120.09681 * 179.73048 * 8 7 6 10 10 C 1.34777 * 119.99950 * 24.28491 * 9 8 7 11 11 O 1.21387 * 119.99949 * 5.37068 * 10 9 8 12 12 C 1.49330 * 119.99909 * 185.36898 * 10 9 8 13 13 O 1.21369 * 119.99700 * 6.88299 * 12 10 9 14 14 N 1.34773 * 120.00318 * 186.88093 * 12 10 9 15 15 C 1.47085 * 120.87971 * 356.97065 * 14 12 10 16 16 C 1.53702 * 108.27732 * 128.75200 * 15 14 12 17 17 N 1.46903 * 109.25313 * 54.08245 * 16 15 14 18 18 C 1.46891 * 110.99710 * 172.60572 * 17 16 15 19 19 C 1.50705 * 109.47689 * 294.30415 * 18 17 16 20 20 H 1.08001 * 119.99444 * 0.02562 * 19 18 17 21 21 C 1.37873 * 120.00585 * 179.97438 * 19 18 17 22 22 N 1.31513 * 119.99688 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00200 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47133 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.46934 * 120.00063 * 23 21 19 26 26 H 1.48495 * 109.47214 * 240.00153 * 23 21 19 27 27 C 1.46897 * 111.26898 * 296.75802 * 17 16 15 28 28 C 1.47080 * 120.88667 * 177.24715 * 14 12 10 29 29 H 1.08998 * 109.47513 * 299.99920 * 1 2 3 30 30 H 1.09004 * 109.47470 * 60.00297 * 1 2 3 31 31 H 1.09008 * 109.46840 * 180.02562 * 1 2 3 32 32 H 1.07999 * 119.98755 * 0.02562 * 4 3 2 33 33 H 1.08002 * 119.90034 * 179.97438 * 5 4 3 34 34 H 1.07998 * 119.90985 * 180.02562 * 6 5 4 35 35 H 1.07997 * 120.01391 * 179.97438 * 7 6 5 36 36 H 0.96995 * 119.99820 * 204.28815 * 9 8 7 37 37 H 1.08994 * 109.63249 * 248.52286 * 15 14 12 38 38 H 1.09008 * 109.62534 * 9.10623 * 15 14 12 39 39 H 1.08993 * 109.64796 * 294.08324 * 16 15 14 40 40 H 1.08995 * 109.42268 * 173.94880 * 16 15 14 41 41 H 1.08998 * 109.47387 * 54.30551 * 18 17 16 42 42 H 1.09001 * 109.47358 * 174.30619 * 18 17 16 43 43 H 0.96998 * 120.00043 * 179.97438 * 22 21 19 44 44 H 1.08994 * 109.49257 * 303.14167 * 27 17 16 45 45 H 1.09005 * 109.48770 * 183.06276 * 27 17 16 46 46 H 1.09005 * 109.62443 * 350.90138 * 28 14 12 47 47 H 1.09004 * 109.62702 * 111.47612 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2933 2.3746 -0.0005 5 6 1.9223 3.6056 -0.0011 6 6 3.3033 3.6810 -0.0003 7 6 4.0619 2.5263 0.0005 8 6 3.4379 1.2865 0.0010 9 7 4.2035 0.1158 -0.0039 10 6 5.4647 0.1334 0.4711 11 8 5.9030 1.1384 0.9920 12 6 6.3227 -1.0834 0.3566 13 8 5.9316 -2.0446 -0.2728 14 7 7.5313 -1.1142 0.9521 15 6 8.0525 0.0628 1.6637 16 6 8.5007 -0.3806 3.0654 17 7 9.4451 -1.4990 2.9408 18 6 10.0325 -1.8395 4.2434 19 6 10.8842 -0.6934 4.7255 20 1 10.9791 0.1988 4.1245 21 6 11.5412 -0.7836 5.9343 22 7 11.4251 -1.8699 6.6663 23 14 12.5974 0.6367 6.5315 24 1 12.5634 1.7337 5.5311 25 1 12.0714 1.1336 7.8282 26 1 13.9965 0.1723 6.7101 27 6 8.8050 -2.6713 2.3293 28 6 8.3667 -2.3237 0.9027 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0278 0.0005 32 1 0.2147 2.3195 -0.0005 33 1 1.3336 4.5110 -0.0019 34 1 3.7899 4.6452 -0.0003 35 1 5.1401 2.5883 0.0006 36 1 3.8268 -0.7086 -0.3492 37 1 8.9013 0.4746 1.1177 38 1 7.2687 0.8155 1.7495 39 1 7.6336 -0.6995 3.6436 40 1 8.9887 0.4529 3.5705 41 1 9.2359 -2.0280 4.9631 42 1 10.6491 -2.7326 4.1416 43 1 11.8876 -1.9335 7.5166 44 1 7.9337 -2.9583 2.9178 45 1 9.5138 -3.4989 2.3005 46 1 7.7908 -3.1496 0.4851 47 1 9.2452 -2.1369 0.2849 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602080603.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:04 Heat of formation + Delta-G solvation = -56.821468 kcal Electronic energy + Delta-G solvation = -30416.328714 eV Core-core repulsion = 26179.184876 eV Total energy + Delta-G solvation = -4237.143838 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.51475 -41.23626 -40.04167 -39.08899 -38.25926 -36.58599 -35.65732 -34.38804 -32.22864 -31.30296 -30.90543 -30.14153 -28.19387 -27.73779 -25.95707 -24.82403 -23.99151 -23.38815 -22.94904 -21.82408 -20.80209 -19.50508 -18.73716 -18.56140 -18.42266 -17.76371 -17.34823 -17.05822 -16.71530 -16.67255 -16.27914 -16.03562 -15.82796 -15.73544 -15.62381 -15.40115 -15.15173 -14.88351 -14.50551 -14.32850 -14.11310 -13.79949 -13.68550 -13.24646 -13.06438 -12.86584 -12.75004 -12.61196 -12.55899 -12.36844 -12.19382 -12.13906 -12.10492 -12.04179 -11.80392 -11.71557 -11.29078 -10.63420 -10.23642 -9.98551 -9.62471 -9.10463 -8.90457 -8.21191 -6.31182 -0.19113 0.38419 0.55746 1.04530 1.42221 1.42784 1.56557 1.91745 2.16720 2.32529 2.40923 2.78762 3.01778 3.11330 3.22608 3.83225 3.88887 3.97032 3.99026 4.16646 4.18875 4.27426 4.33982 4.39067 4.39746 4.41909 4.48096 4.56320 4.63266 4.75162 4.76461 4.87662 4.94511 4.99306 5.06963 5.09837 5.17408 5.26322 5.28996 5.43278 5.57501 5.63592 5.78093 5.83163 6.01034 6.05620 6.25221 6.32709 6.51519 6.54354 6.71599 6.84509 7.38673 8.90389 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.014966 B = 0.002343 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.506738 B =11946.685476 C =12941.207803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.338 6.338 3 C 0.096 3.904 4 C -0.189 4.189 5 C -0.089 4.089 6 C -0.140 4.140 7 C -0.110 4.110 8 C 0.085 3.915 9 N -0.621 5.621 10 C 0.513 3.487 11 O -0.499 6.499 12 C 0.509 3.491 13 O -0.543 6.543 14 N -0.573 5.573 15 C 0.070 3.930 16 C 0.055 3.945 17 N -0.540 5.540 18 C 0.208 3.792 19 C -0.521 4.521 20 H 0.067 0.933 21 C 0.000 4.000 22 N -0.936 5.936 23 Si 0.970 3.030 24 H -0.261 1.261 25 H -0.280 1.280 26 H -0.279 1.279 27 C 0.041 3.959 28 C 0.122 3.878 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.115 0.885 32 H 0.160 0.840 33 H 0.158 0.842 34 H 0.148 0.852 35 H 0.142 0.858 36 H 0.428 0.572 37 H 0.083 0.917 38 H 0.158 0.842 39 H 0.010 0.990 40 H 0.083 0.917 41 H -0.042 1.042 42 H 0.009 0.991 43 H 0.264 0.736 44 H 0.017 0.983 45 H 0.090 0.910 46 H 0.104 0.896 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.810 9.052 -17.301 30.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.253 6.253 3 C 0.049 3.951 4 C -0.207 4.207 5 C -0.107 4.107 6 C -0.158 4.158 7 C -0.130 4.130 8 C -0.009 4.009 9 N -0.266 5.266 10 C 0.296 3.704 11 O -0.377 6.377 12 C 0.291 3.709 13 O -0.422 6.422 14 N -0.305 5.305 15 C -0.051 4.051 16 C -0.074 4.074 17 N -0.265 5.265 18 C 0.082 3.918 19 C -0.559 4.559 20 H 0.085 0.915 21 C -0.198 4.198 22 N -0.576 5.576 23 Si 0.795 3.205 24 H -0.184 1.184 25 H -0.206 1.206 26 H -0.205 1.205 27 C -0.088 4.088 28 C 0.000 4.000 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.133 0.867 32 H 0.178 0.822 33 H 0.176 0.824 34 H 0.166 0.834 35 H 0.160 0.840 36 H 0.267 0.733 37 H 0.101 0.899 38 H 0.174 0.826 39 H 0.028 0.972 40 H 0.101 0.899 41 H -0.024 1.024 42 H 0.027 0.973 43 H 0.073 0.927 44 H 0.036 0.964 45 H 0.109 0.891 46 H 0.122 0.878 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -23.155 9.061 -17.435 30.368 hybrid contribution -0.089 -0.598 1.310 1.442 sum -23.244 8.463 -16.126 29.529 Atomic orbital electron populations 1.23368 0.75831 1.05606 1.02606 1.86008 1.23978 1.26329 1.88951 1.18856 0.89814 0.86249 1.00225 1.21426 1.01301 0.91088 1.06931 1.21393 0.94487 0.98112 0.96751 1.21305 0.94357 0.98358 1.01796 1.21422 1.01856 0.90373 0.99309 1.17396 0.87712 0.86614 1.09213 1.42905 1.11951 1.12860 1.58854 1.20169 0.82982 0.88566 0.78645 1.90324 1.71341 1.34198 1.41787 1.19825 0.82481 0.87674 0.80871 1.90740 1.72807 1.36720 1.41886 1.48206 1.15776 1.15988 1.50507 1.23490 1.03012 0.88024 0.90570 1.22408 0.93085 0.95461 0.96421 1.62065 1.32401 1.06610 1.25415 1.19390 0.92351 0.96201 0.83903 1.21482 1.28337 1.02313 1.03802 0.91489 1.25931 0.98188 0.98840 0.96802 1.70095 1.44636 1.29240 1.13650 0.85313 0.78047 0.79010 0.78139 1.18436 1.20603 1.20458 1.22475 0.97369 0.94203 0.94728 1.21917 0.94756 0.86956 0.96332 0.91549 0.90957 0.86706 0.82221 0.82404 0.83399 0.84020 0.73290 0.89857 0.82572 0.97155 0.89854 1.02387 0.97275 0.92708 0.96445 0.89126 0.87794 0.88842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.81 113.37 1.11 1.28 16 2 O -0.34 -5.91 9.90 -93.08 -0.92 -6.83 16 3 C 0.10 1.80 6.70 22.62 0.15 1.95 16 4 C -0.19 -2.53 9.04 22.35 0.20 -2.33 16 5 C -0.09 -1.11 10.04 22.28 0.22 -0.88 16 6 C -0.14 -2.23 10.04 22.27 0.22 -2.00 16 7 C -0.11 -2.37 8.73 22.39 0.20 -2.17 16 8 C 0.08 1.91 6.45 38.26 0.25 2.16 16 9 N -0.62 -14.92 5.27 -304.49 -1.60 -16.52 16 10 C 0.51 14.05 7.62 87.23 0.66 14.71 16 11 O -0.50 -14.47 10.16 -3.36 -0.03 -14.51 16 12 C 0.51 15.21 7.76 87.23 0.68 15.88 16 13 O -0.54 -17.33 15.97 -3.31 -0.05 -17.39 16 14 N -0.57 -17.74 3.00 -818.74 -2.46 -20.20 16 15 C 0.07 2.24 6.41 86.50 0.55 2.79 16 16 C 0.06 2.19 5.47 86.54 0.47 2.66 16 17 N -0.54 -23.47 4.62 -898.92 -4.15 -27.63 16 18 C 0.21 11.15 4.72 85.56 0.40 11.55 16 19 C -0.52 -29.41 8.41 25.60 0.22 -29.20 16 20 H 0.07 3.68 7.13 -2.91 -0.02 3.66 16 21 C 0.00 0.02 5.46 84.65 0.46 0.48 16 22 N -0.94 -56.56 13.29 21.45 0.28 -56.28 16 23 Si 0.97 44.26 29.54 68.60 2.03 46.28 16 24 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 25 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 26 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 27 C 0.04 1.50 5.62 86.38 0.49 1.98 16 28 C 0.12 3.66 6.59 86.35 0.57 4.23 16 29 H 0.07 0.43 7.66 -2.39 -0.02 0.41 16 30 H 0.07 0.37 7.66 -2.39 -0.02 0.35 16 31 H 0.11 0.63 8.14 -2.38 -0.02 0.61 16 32 H 0.16 1.16 6.30 -2.91 -0.02 1.14 16 33 H 0.16 0.95 8.06 -2.91 -0.02 0.92 16 34 H 0.15 1.72 8.06 -2.91 -0.02 1.69 16 35 H 0.14 3.38 5.73 -2.91 -0.02 3.36 16 36 H 0.43 9.61 7.84 -92.71 -0.73 8.88 16 37 H 0.08 2.56 8.14 -2.39 -0.02 2.55 16 38 H 0.16 4.86 3.87 -77.64 -0.30 4.56 16 39 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 40 H 0.08 3.54 6.67 -2.39 -0.02 3.52 16 41 H -0.04 -2.46 8.12 -2.39 -0.02 -2.48 16 42 H 0.01 0.52 7.97 -2.39 -0.02 0.51 16 43 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 44 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 45 H 0.09 3.14 7.99 -2.38 -0.02 3.13 16 46 H 0.10 2.89 7.08 -2.38 -0.02 2.87 16 47 H 0.09 2.60 8.14 -2.38 -0.02 2.58 16 Total: -1.00 -70.50 381.10 -0.05 -70.56 By element: Atomic # 1 Polarization: 19.41 SS G_CDS: 0.00 Total: 19.40 kcal Atomic # 6 Polarization: 16.25 SS G_CDS: 6.86 Total: 23.11 kcal Atomic # 7 Polarization: -112.70 SS G_CDS: -7.93 Total: -120.63 kcal Atomic # 8 Polarization: -37.71 SS G_CDS: -1.01 Total: -38.72 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.28 kcal Total: -70.50 -0.05 -70.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602080603.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.738 kcal (2) G-P(sol) polarization free energy of solvation -70.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds