Wall clock time and date at job start Wed Apr 1 2020 05:04:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35900 * 116.99814 * 2 1 4 4 C 1.38751 * 120.06081 * 0.24792 * 3 2 1 5 5 C 1.38119 * 119.94756 * 180.31903 * 4 3 2 6 6 C 1.38290 * 120.05255 * 359.68544 * 5 4 3 7 7 C 1.38245 * 120.11274 * 0.02562 * 6 5 4 8 8 C 1.38166 * 120.05641 * 0.02562 * 7 6 5 9 9 C 1.50695 * 120.03111 * 179.97438 * 8 7 6 10 10 O 1.42901 * 109.46957 * 359.97438 * 9 8 7 11 11 C 1.42907 * 114.00225 * 180.02562 * 10 9 8 12 12 C 1.52997 * 109.47014 * 179.97438 * 11 10 9 13 13 H 1.08996 * 109.47350 * 304.99913 * 12 11 10 14 14 O 1.42897 * 109.47282 * 65.00272 * 12 11 10 15 15 C 1.53002 * 109.46760 * 184.99892 * 12 11 10 16 16 N 1.46503 * 109.47069 * 174.99969 * 15 12 11 17 17 C 1.35312 * 125.86851 * 125.00004 * 16 15 12 18 18 C 1.35341 * 106.17598 * 180.02562 * 17 16 15 19 19 C 1.50700 * 126.75090 * 179.97438 * 18 17 16 20 20 C 1.50702 * 109.46869 * 125.00400 * 19 18 17 21 21 H 1.08002 * 120.00299 * 0.02562 * 20 19 18 22 22 C 1.37884 * 119.99942 * 179.72213 * 20 19 18 23 23 N 1.31514 * 119.99698 * 0.28408 * 22 20 19 24 24 Si 1.86794 * 119.99837 * 180.27476 * 22 20 19 25 25 H 1.48501 * 109.47188 * 90.00793 * 24 22 20 26 26 H 1.48501 * 109.47085 * 210.00372 * 24 22 20 27 27 H 1.48498 * 109.47634 * 330.00608 * 24 22 20 28 28 N 1.33772 * 106.49948 * 0.26771 * 18 17 16 29 29 N 1.28637 * 108.88114 * 359.55958 * 28 18 17 30 30 H 1.09005 * 109.47024 * 300.00416 * 1 2 3 31 31 H 1.09002 * 109.47512 * 59.99928 * 1 2 3 32 32 H 1.09003 * 109.47456 * 180.02562 * 1 2 3 33 33 H 1.08006 * 120.02560 * 0.03492 * 4 3 2 34 34 H 1.07995 * 119.97505 * 179.70572 * 5 4 3 35 35 H 1.07997 * 119.94330 * 180.02562 * 6 5 4 36 36 H 1.07999 * 119.97239 * 179.97438 * 7 6 5 37 37 H 1.08997 * 109.47433 * 239.99522 * 9 8 7 38 38 H 1.09001 * 109.47316 * 119.99357 * 9 8 7 39 39 H 1.09001 * 109.46756 * 60.00098 * 11 10 9 40 40 H 1.08998 * 109.46971 * 300.00326 * 11 10 9 41 41 H 0.96701 * 114.00126 * 59.99304 * 14 12 11 42 42 H 1.09004 * 109.46852 * 55.00332 * 15 12 11 43 43 H 1.08991 * 109.47483 * 295.00213 * 15 12 11 44 44 H 1.08001 * 126.90658 * 359.97438 * 17 16 15 45 45 H 1.09004 * 109.47210 * 5.00693 * 19 18 17 46 46 H 1.08994 * 109.47551 * 245.00345 * 19 18 17 47 47 H 0.97005 * 119.99651 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2915 2.3753 0.0052 5 6 1.9209 3.6048 -0.0015 6 6 3.3019 3.6758 -0.0068 7 6 4.0560 2.5171 -0.0059 8 6 3.4312 1.2848 -0.0003 9 6 4.2537 0.0221 0.0000 10 8 5.6425 0.3584 -0.0066 11 6 6.5147 -0.7737 -0.0074 12 6 7.9686 -0.2973 -0.0153 13 1 8.1266 0.3737 -0.8597 14 8 8.2495 0.3954 1.2026 15 6 8.9001 -1.5044 -0.1419 16 7 10.2843 -1.0419 -0.2695 17 6 11.3198 -1.4121 0.5189 18 6 12.4046 -0.7512 0.0516 19 6 13.8086 -0.8255 0.5941 20 6 14.7554 -1.2100 -0.5135 21 1 14.3782 -1.3828 -1.5107 22 6 16.1040 -1.3350 -0.2553 23 7 16.5633 -1.1242 0.9589 24 14 17.2786 -1.8040 -1.6300 25 1 17.7739 -0.5742 -2.2990 26 1 18.4271 -2.5565 -1.0645 27 1 16.5687 -2.6540 -2.6193 28 7 11.9841 -0.0142 -0.9825 29 7 10.7243 -0.2131 -1.1505 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 0.2128 2.3204 0.0098 34 1 1.3340 4.5114 -0.0022 35 1 3.7923 4.6380 -0.0116 36 1 5.1344 2.5751 -0.0105 37 1 4.0181 -0.5652 -0.8874 38 1 4.0248 -0.5604 0.8925 39 1 6.3257 -1.3772 -0.8952 40 1 6.3331 -1.3729 0.8848 41 1 8.1296 -0.1420 1.9974 42 1 8.6274 -2.0827 -1.0247 43 1 8.8065 -2.1302 0.7455 44 1 11.2870 -2.0965 1.3537 45 1 13.8530 -1.5733 1.3860 46 1 14.0948 0.1464 0.9958 47 1 17.5121 -1.2125 1.1406 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603256550.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:52 Heat of formation + Delta-G solvation = -8.116161 kcal Electronic energy + Delta-G solvation = -28686.328086 eV Core-core repulsion = 24451.296269 eV Total energy + Delta-G solvation = -4235.031818 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.48580 -40.68736 -38.98914 -37.85878 -36.98236 -34.28292 -33.09664 -32.55749 -31.01427 -30.53075 -30.48668 -27.96173 -27.49968 -26.82078 -25.73527 -23.43468 -22.69135 -22.27191 -21.84240 -21.20051 -20.06119 -18.53138 -17.68990 -16.97698 -16.82912 -16.55517 -16.45891 -16.26104 -15.99620 -15.72408 -15.66335 -15.09436 -14.75805 -14.50683 -14.43680 -14.04176 -13.95562 -13.62928 -13.40216 -12.91875 -12.65968 -12.45055 -12.43160 -12.38120 -12.03361 -11.79834 -11.64994 -11.57886 -11.29484 -11.19742 -10.94887 -10.71403 -10.64550 -10.52336 -10.19159 -10.04206 -9.65397 -9.37313 -9.23467 -9.18687 -8.55220 -8.40045 -8.08244 -5.95826 -3.96208 0.92999 1.05240 2.22206 2.62738 2.78903 3.18390 3.36950 3.39372 3.44274 3.47695 3.56707 4.00312 4.21344 4.37177 4.48753 4.50627 4.54328 4.58186 4.62244 4.63704 4.70039 4.73745 4.86676 4.92116 4.98611 5.00575 5.03588 5.09917 5.11789 5.21179 5.40923 5.41147 5.60085 5.62605 5.88493 5.89752 6.01491 6.12402 6.18538 6.33771 6.42007 6.76868 6.90809 7.16423 7.19540 7.38306 7.56966 7.66973 8.02038 8.41078 9.07226 9.35075 9.66421 11.15289 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.030608 B = 0.001502 C = 0.001473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.584044 B =18631.870309 C =18999.739195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.318 6.318 3 C 0.129 3.871 4 C -0.210 4.210 5 C -0.082 4.082 6 C -0.156 4.156 7 C -0.056 4.056 8 C -0.121 4.121 9 C 0.115 3.885 10 O -0.371 6.371 11 C 0.036 3.964 12 C 0.099 3.901 13 H 0.124 0.876 14 O -0.539 6.539 15 C 0.093 3.907 16 N -0.299 5.299 17 C -0.080 4.080 18 C 0.036 3.964 19 C 0.092 3.908 20 C -0.503 4.503 21 H 0.059 0.941 22 C 0.056 3.944 23 N -0.898 5.898 24 Si 0.897 3.103 25 H -0.279 1.279 26 H -0.287 1.287 27 H -0.275 1.275 28 N -0.259 5.259 29 N -0.105 5.105 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.100 0.900 33 H 0.128 0.872 34 H 0.124 0.876 35 H 0.126 0.874 36 H 0.143 0.857 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.064 0.936 40 H 0.058 0.942 41 H 0.372 0.628 42 H 0.103 0.897 43 H 0.105 0.895 44 H 0.180 0.820 45 H 0.036 0.964 46 H 0.039 0.961 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -37.122 0.531 1.964 37.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.232 6.232 3 C 0.083 3.917 4 C -0.228 4.228 5 C -0.100 4.100 6 C -0.174 4.174 7 C -0.074 4.074 8 C -0.121 4.121 9 C 0.038 3.962 10 O -0.290 6.290 11 C -0.041 4.041 12 C 0.038 3.962 13 H 0.142 0.858 14 O -0.343 6.343 15 C -0.030 4.030 16 N -0.094 5.094 17 C -0.228 4.228 18 C -0.101 4.101 19 C 0.053 3.947 20 C -0.542 4.542 21 H 0.077 0.923 22 C -0.144 4.144 23 N -0.538 5.538 24 Si 0.725 3.275 25 H -0.206 1.206 26 H -0.213 1.213 27 H -0.200 1.200 28 N -0.126 5.126 29 N -0.084 5.084 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.119 0.881 33 H 0.146 0.854 34 H 0.142 0.858 35 H 0.144 0.856 36 H 0.161 0.839 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.076 0.924 41 H 0.218 0.782 42 H 0.121 0.879 43 H 0.123 0.877 44 H 0.197 0.803 45 H 0.054 0.946 46 H 0.057 0.943 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -37.068 1.884 0.447 37.118 hybrid contribution 0.185 -1.699 0.615 1.816 sum -36.882 0.186 1.062 36.898 Atomic orbital electron populations 1.23067 0.78215 1.04036 1.01423 1.86051 1.21529 1.26863 1.88728 1.18699 0.91147 0.84459 0.97358 1.21147 0.99884 0.92234 1.09582 1.20985 0.94809 0.96949 0.97250 1.21168 0.93824 0.98787 1.03665 1.20988 1.01160 0.90395 0.94826 1.18980 0.89845 0.95604 1.07702 1.20965 0.80386 0.93860 1.00947 1.87904 1.15063 1.30585 1.95482 1.23113 0.90525 0.89055 1.01455 1.22220 0.89667 0.93932 0.90347 0.85785 1.86782 1.91158 1.41563 1.14791 1.22445 0.78214 0.97212 1.05168 1.46858 1.08480 1.31650 1.22432 1.23299 0.87633 1.08978 1.02927 1.22999 0.98680 0.94736 0.93727 1.17724 0.82454 0.98421 0.96072 1.21061 0.91513 1.46123 0.95504 0.92299 1.24973 0.98223 0.95577 0.95644 1.69951 1.14174 1.50095 1.19575 0.86509 0.80333 0.78572 0.82100 1.20553 1.21322 1.19982 1.75072 1.00420 1.20534 1.16610 1.78153 1.07646 1.09361 1.13245 0.92591 0.92576 0.88149 0.85402 0.85768 0.85583 0.83936 0.91895 0.91936 0.91740 0.92421 0.78163 0.87903 0.87686 0.80272 0.94582 0.94268 0.92952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.11 9.81 101.05 0.99 1.10 16 2 O -0.32 -2.48 9.92 -19.43 -0.19 -2.68 16 3 C 0.13 1.13 6.66 -39.22 -0.26 0.87 16 4 C -0.21 -1.56 9.04 -39.44 -0.36 -1.91 16 5 C -0.08 -0.60 10.04 -39.61 -0.40 -1.00 16 6 C -0.16 -1.31 10.04 -39.56 -0.40 -1.70 16 7 C -0.06 -0.54 9.37 -39.61 -0.37 -0.92 16 8 C -0.12 -1.16 5.89 -104.47 -0.62 -1.78 16 9 C 0.11 0.99 5.80 36.00 0.21 1.20 16 10 O -0.37 -3.65 8.79 -40.08 -0.35 -4.00 16 11 C 0.04 0.27 5.57 37.16 0.21 0.47 16 12 C 0.10 0.99 3.33 -26.73 -0.09 0.91 16 13 H 0.12 1.58 8.00 -51.93 -0.42 1.17 16 14 O -0.54 -6.40 13.25 -40.08 -0.53 -6.93 16 15 C 0.09 0.90 6.09 -4.04 -0.02 0.88 16 16 N -0.30 -4.91 3.39 -61.26 -0.21 -5.12 16 17 C -0.08 -1.46 11.49 -17.05 -0.20 -1.65 16 18 C 0.04 0.83 6.44 -82.78 -0.53 0.30 16 19 C 0.09 2.45 5.55 -29.03 -0.16 2.28 16 20 C -0.50 -14.73 9.09 -34.44 -0.31 -15.04 16 21 H 0.06 1.76 7.74 -52.49 -0.41 1.35 16 22 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 23 N -0.90 -26.88 13.29 55.43 0.74 -26.15 16 24 Si 0.90 22.33 29.54 -169.99 -5.02 17.31 16 25 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 26 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 27 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 28 N -0.26 -6.34 12.40 33.29 0.41 -5.93 16 29 N -0.11 -2.19 12.82 60.35 0.77 -1.41 16 30 H 0.06 0.18 7.65 -51.93 -0.40 -0.22 16 31 H 0.06 0.18 7.67 -51.93 -0.40 -0.22 16 32 H 0.10 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.13 0.65 6.30 -52.48 -0.33 0.32 16 34 H 0.12 0.62 8.06 -52.49 -0.42 0.20 16 35 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 36 H 0.14 1.48 7.00 -52.49 -0.37 1.11 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.37 2.79 9.05 45.56 0.41 3.20 16 42 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.10 0.66 8.07 -51.93 -0.42 0.24 16 44 H 0.18 2.54 8.06 -52.49 -0.42 2.11 16 45 H 0.04 0.94 8.12 -51.93 -0.42 0.52 16 46 H 0.04 1.11 8.14 -51.93 -0.42 0.69 16 47 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 403.48 15.07 6.08 6.08 Total: -1.00 -37.84 403.48 -6.81 -44.66 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: -6.11 Total: -1.39 kcal Atomic # 6 Polarization: -12.04 SS G_CDS: -2.41 Total: -14.45 kcal Atomic # 7 Polarization: -40.32 SS G_CDS: 1.72 Total: -38.61 kcal Atomic # 8 Polarization: -12.53 SS G_CDS: -1.08 Total: -13.61 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -37.84 -6.81 -44.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603256550.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.541 kcal (2) G-P(sol) polarization free energy of solvation -37.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds