Wall clock time and date at job start Wed Apr 1 2020 05:04:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35900 * 116.99814 * 2 1 4 4 C 1.38751 * 120.06081 * 0.24792 * 3 2 1 5 5 C 1.38119 * 119.94756 * 180.31903 * 4 3 2 6 6 C 1.38290 * 120.05255 * 359.68544 * 5 4 3 7 7 C 1.38245 * 120.11274 * 0.02562 * 6 5 4 8 8 C 1.38166 * 120.05641 * 0.02562 * 7 6 5 9 9 C 1.50695 * 120.03111 * 179.97438 * 8 7 6 10 10 O 1.42901 * 109.46957 * 359.97438 * 9 8 7 11 11 C 1.42907 * 114.00225 * 180.02562 * 10 9 8 12 12 C 1.52997 * 109.47014 * 179.97438 * 11 10 9 13 13 H 1.08996 * 109.47350 * 304.99913 * 12 11 10 14 14 O 1.42897 * 109.47282 * 65.00272 * 12 11 10 15 15 C 1.53002 * 109.46760 * 184.99892 * 12 11 10 16 16 N 1.46503 * 109.47069 * 174.99969 * 15 12 11 17 17 C 1.35312 * 125.86851 * 125.00004 * 16 15 12 18 18 C 1.35341 * 106.17598 * 180.02562 * 17 16 15 19 19 C 1.50700 * 126.75090 * 179.97438 * 18 17 16 20 20 C 1.50702 * 109.46869 * 125.00400 * 19 18 17 21 21 H 1.08002 * 120.00299 * 0.02562 * 20 19 18 22 22 C 1.37884 * 119.99942 * 179.72213 * 20 19 18 23 23 N 1.31514 * 119.99698 * 0.28408 * 22 20 19 24 24 Si 1.86794 * 119.99837 * 180.27476 * 22 20 19 25 25 H 1.48501 * 109.47188 * 90.00793 * 24 22 20 26 26 H 1.48501 * 109.47085 * 210.00372 * 24 22 20 27 27 H 1.48498 * 109.47634 * 330.00608 * 24 22 20 28 28 N 1.33772 * 106.49948 * 0.26771 * 18 17 16 29 29 N 1.28637 * 108.88114 * 359.55958 * 28 18 17 30 30 H 1.09005 * 109.47024 * 300.00416 * 1 2 3 31 31 H 1.09002 * 109.47512 * 59.99928 * 1 2 3 32 32 H 1.09003 * 109.47456 * 180.02562 * 1 2 3 33 33 H 1.08006 * 120.02560 * 0.03492 * 4 3 2 34 34 H 1.07995 * 119.97505 * 179.70572 * 5 4 3 35 35 H 1.07997 * 119.94330 * 180.02562 * 6 5 4 36 36 H 1.07999 * 119.97239 * 179.97438 * 7 6 5 37 37 H 1.08997 * 109.47433 * 239.99522 * 9 8 7 38 38 H 1.09001 * 109.47316 * 119.99357 * 9 8 7 39 39 H 1.09001 * 109.46756 * 60.00098 * 11 10 9 40 40 H 1.08998 * 109.46971 * 300.00326 * 11 10 9 41 41 H 0.96701 * 114.00126 * 59.99304 * 14 12 11 42 42 H 1.09004 * 109.46852 * 55.00332 * 15 12 11 43 43 H 1.08991 * 109.47483 * 295.00213 * 15 12 11 44 44 H 1.08001 * 126.90658 * 359.97438 * 17 16 15 45 45 H 1.09004 * 109.47210 * 5.00693 * 19 18 17 46 46 H 1.08994 * 109.47551 * 245.00345 * 19 18 17 47 47 H 0.97005 * 119.99651 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2915 2.3753 0.0052 5 6 1.9209 3.6048 -0.0015 6 6 3.3019 3.6758 -0.0068 7 6 4.0560 2.5171 -0.0059 8 6 3.4312 1.2848 -0.0003 9 6 4.2537 0.0221 0.0000 10 8 5.6425 0.3584 -0.0066 11 6 6.5147 -0.7737 -0.0074 12 6 7.9686 -0.2973 -0.0153 13 1 8.1266 0.3737 -0.8597 14 8 8.2495 0.3954 1.2026 15 6 8.9001 -1.5044 -0.1419 16 7 10.2843 -1.0419 -0.2695 17 6 11.3198 -1.4121 0.5189 18 6 12.4046 -0.7512 0.0516 19 6 13.8086 -0.8255 0.5941 20 6 14.7554 -1.2100 -0.5135 21 1 14.3782 -1.3828 -1.5107 22 6 16.1040 -1.3350 -0.2553 23 7 16.5633 -1.1242 0.9589 24 14 17.2786 -1.8040 -1.6300 25 1 17.7739 -0.5742 -2.2990 26 1 18.4271 -2.5565 -1.0645 27 1 16.5687 -2.6540 -2.6193 28 7 11.9841 -0.0142 -0.9825 29 7 10.7243 -0.2131 -1.1505 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 0.2128 2.3204 0.0098 34 1 1.3340 4.5114 -0.0022 35 1 3.7923 4.6380 -0.0116 36 1 5.1344 2.5751 -0.0105 37 1 4.0181 -0.5652 -0.8874 38 1 4.0248 -0.5604 0.8925 39 1 6.3257 -1.3772 -0.8952 40 1 6.3331 -1.3729 0.8848 41 1 8.1296 -0.1420 1.9974 42 1 8.6274 -2.0827 -1.0247 43 1 8.8065 -2.1302 0.7455 44 1 11.2870 -2.0965 1.3537 45 1 13.8530 -1.5733 1.3860 46 1 14.0948 0.1464 0.9958 47 1 17.5121 -1.2125 1.1406 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603256550.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:51 Heat of formation + Delta-G solvation = -36.437871 kcal Electronic energy + Delta-G solvation = -28687.556208 eV Core-core repulsion = 24451.296269 eV Total energy + Delta-G solvation = -4236.259939 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -44.01064 -41.23758 -39.70421 -38.47172 -37.71614 -35.85583 -34.89901 -33.19467 -32.84438 -31.47327 -31.08293 -29.37354 -28.33208 -27.64628 -26.49637 -25.45455 -23.55703 -22.91272 -22.67153 -22.41891 -21.54580 -19.09472 -18.75777 -18.38731 -17.66676 -17.52765 -17.38711 -17.22438 -16.77957 -16.62913 -16.50224 -16.25395 -15.84046 -15.56162 -15.38003 -15.27560 -14.55780 -14.48450 -14.43801 -14.23388 -13.87199 -13.71237 -13.35648 -13.25543 -12.96298 -12.84070 -12.82595 -12.65975 -12.48171 -12.35418 -12.07319 -12.02500 -11.87520 -11.74112 -11.65533 -11.44061 -11.28345 -10.80681 -10.66877 -10.56586 -9.81625 -9.80219 -9.13437 -8.17677 -6.26380 0.32053 0.43990 0.79491 1.40566 1.43258 1.52039 1.54586 1.81071 2.33925 2.45439 2.46387 2.75879 3.14963 3.29019 3.51556 3.67914 3.80012 3.83640 3.92012 4.00672 4.11297 4.13220 4.23436 4.31309 4.34080 4.36228 4.40084 4.45919 4.46543 4.50883 4.51984 4.55334 4.71042 4.74582 4.81548 4.96761 5.03556 5.30295 5.32073 5.41799 5.47523 5.56186 5.57818 5.77987 5.82369 5.85947 6.19732 6.24261 6.39607 6.77645 6.81912 7.40177 7.75280 8.93227 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.030608 B = 0.001502 C = 0.001473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.584044 B =18631.870309 C =18999.739195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.332 6.332 3 C 0.120 3.880 4 C -0.211 4.211 5 C -0.084 4.084 6 C -0.168 4.168 7 C -0.075 4.075 8 C -0.142 4.142 9 C 0.119 3.881 10 O -0.397 6.397 11 C 0.040 3.960 12 C 0.104 3.896 13 H 0.088 0.912 14 O -0.569 6.569 15 C 0.081 3.919 16 N -0.278 5.278 17 C -0.046 4.046 18 C -0.012 4.012 19 C 0.103 3.897 20 C -0.525 4.525 21 H 0.044 0.956 22 C 0.008 3.992 23 N -0.927 5.927 24 Si 0.963 3.037 25 H -0.277 1.277 26 H -0.273 1.273 27 H -0.271 1.271 28 N -0.312 5.312 29 N -0.121 5.121 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.118 0.882 33 H 0.153 0.847 34 H 0.150 0.850 35 H 0.135 0.865 36 H 0.126 0.874 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.084 0.916 40 H 0.089 0.911 41 H 0.390 0.610 42 H 0.130 0.870 43 H 0.155 0.845 44 H 0.228 0.772 45 H 0.036 0.964 46 H 0.004 0.996 47 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -39.792 -1.482 2.245 39.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.246 6.246 3 C 0.075 3.925 4 C -0.229 4.229 5 C -0.102 4.102 6 C -0.186 4.186 7 C -0.093 4.093 8 C -0.142 4.142 9 C 0.043 3.957 10 O -0.316 6.316 11 C -0.037 4.037 12 C 0.044 3.956 13 H 0.106 0.894 14 O -0.377 6.377 15 C -0.039 4.039 16 N -0.073 5.073 17 C -0.196 4.196 18 C -0.150 4.150 19 C 0.064 3.936 20 C -0.563 4.563 21 H 0.062 0.938 22 C -0.190 4.190 23 N -0.567 5.567 24 Si 0.788 3.212 25 H -0.203 1.203 26 H -0.198 1.198 27 H -0.196 1.196 28 N -0.179 5.179 29 N -0.100 5.100 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.136 0.864 33 H 0.170 0.830 34 H 0.168 0.832 35 H 0.153 0.847 36 H 0.144 0.856 37 H 0.086 0.914 38 H 0.089 0.911 39 H 0.102 0.898 40 H 0.107 0.893 41 H 0.240 0.760 42 H 0.148 0.852 43 H 0.173 0.827 44 H 0.244 0.756 45 H 0.054 0.946 46 H 0.022 0.978 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -39.789 -0.135 0.721 39.796 hybrid contribution 0.813 -1.079 0.583 1.472 sum -38.976 -1.214 1.304 39.016 Atomic orbital electron populations 1.23351 0.76341 1.05609 1.02294 1.86027 1.23499 1.26475 1.88602 1.18828 0.91064 0.85334 0.97313 1.21485 1.01171 0.91785 1.08499 1.21308 0.94476 0.98096 0.96272 1.21375 0.94651 0.98787 1.03813 1.20952 1.00562 0.91406 0.96426 1.19206 0.90775 0.95890 1.08372 1.20972 0.79683 0.93572 1.01484 1.87884 1.15883 1.32157 1.95722 1.23143 0.88098 0.88594 1.03886 1.22068 0.91697 0.93149 0.88718 0.89446 1.86741 1.91498 1.43271 1.16164 1.23116 0.74185 0.97667 1.08924 1.47314 1.10584 1.29254 1.20185 1.23734 0.86184 1.07123 1.02593 1.22677 0.98819 0.97930 0.95621 1.17373 0.84578 0.96274 0.95375 1.21301 0.92729 1.46705 0.95595 0.93769 1.25797 0.99772 0.95283 0.98127 1.70045 1.14820 1.50514 1.21296 0.85486 0.78283 0.78369 0.79094 1.20311 1.19780 1.19551 1.74972 1.02295 1.22464 1.18126 1.78020 1.06394 1.10855 1.14680 0.91640 0.91711 0.86360 0.82963 0.83247 0.84672 0.85649 0.91389 0.91095 0.89778 0.89329 0.76012 0.85171 0.82703 0.75587 0.94605 0.97760 0.92508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.81 113.37 1.11 1.22 16 2 O -0.33 -4.68 9.92 -92.43 -0.92 -5.59 16 3 C 0.12 1.99 6.66 22.51 0.15 2.14 16 4 C -0.21 -2.79 9.04 22.36 0.20 -2.58 16 5 C -0.08 -1.12 10.04 22.25 0.22 -0.89 16 6 C -0.17 -2.82 10.04 22.28 0.22 -2.60 16 7 C -0.08 -1.54 9.37 22.25 0.21 -1.33 16 8 C -0.14 -2.72 5.89 -19.77 -0.12 -2.83 16 9 C 0.12 1.95 5.80 71.23 0.41 2.36 16 10 O -0.40 -7.56 8.79 -144.34 -1.27 -8.83 16 11 C 0.04 0.48 5.57 71.98 0.40 0.89 16 12 C 0.10 1.92 3.33 30.59 0.10 2.02 16 13 H 0.09 2.27 8.00 -2.39 -0.02 2.25 16 14 O -0.57 -12.85 13.25 -144.34 -1.91 -14.76 16 15 C 0.08 1.28 6.09 86.38 0.53 1.81 16 16 N -0.28 -8.62 3.39 -347.73 -1.18 -9.80 16 17 C -0.05 -1.59 11.49 83.49 0.96 -0.63 16 18 C -0.01 -0.58 6.44 41.59 0.27 -0.32 16 19 C 0.10 5.67 5.55 29.10 0.16 5.83 16 20 C -0.52 -31.63 9.09 25.60 0.23 -31.40 16 21 H 0.04 2.73 7.74 -2.91 -0.02 2.70 16 22 C 0.01 0.49 5.46 84.66 0.46 0.96 16 23 N -0.93 -56.27 13.29 21.45 0.28 -55.98 16 24 Si 0.96 46.24 29.54 68.60 2.03 48.27 16 25 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 26 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 27 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 28 N -0.31 -15.79 12.40 -48.60 -0.60 -16.40 16 29 N -0.12 -5.05 12.82 37.02 0.47 -4.57 16 30 H 0.06 0.26 7.65 -2.38 -0.02 0.24 16 31 H 0.06 0.26 7.67 -2.39 -0.02 0.25 16 32 H 0.12 0.23 8.14 -2.39 -0.02 0.21 16 33 H 0.15 1.14 6.30 -2.91 -0.02 1.12 16 34 H 0.15 1.15 8.06 -2.91 -0.02 1.13 16 35 H 0.14 1.86 8.06 -2.91 -0.02 1.84 16 36 H 0.13 2.87 7.00 -2.91 -0.02 2.85 16 37 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.09 0.55 8.14 -2.39 -0.02 0.54 16 41 H 0.39 4.92 9.05 -74.06 -0.67 4.25 16 42 H 0.13 1.49 8.14 -2.38 -0.02 1.47 16 43 H 0.16 1.00 8.07 -2.39 -0.02 0.98 16 44 H 0.23 5.42 8.06 -2.91 -0.02 5.39 16 45 H 0.04 1.92 8.12 -2.38 -0.02 1.90 16 46 H 0.00 0.26 8.14 -2.39 -0.02 0.24 16 47 H 0.27 15.10 8.31 -92.70 -0.77 14.33 16 Total: -1.00 -87.59 403.48 2.75 -84.83 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: 0.32 Total: 8.19 kcal Atomic # 6 Polarization: -30.89 SS G_CDS: 5.53 Total: -25.36 kcal Atomic # 7 Polarization: -85.73 SS G_CDS: -1.02 Total: -86.75 kcal Atomic # 8 Polarization: -25.08 SS G_CDS: -4.10 Total: -29.18 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.27 kcal Total: -87.59 2.75 -84.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603256550.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.394 kcal (2) G-P(sol) polarization free energy of solvation -87.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds