Wall clock time and date at job start Wed Apr 1 2020 05:08:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35659 * 117.00035 * 2 1 4 4 C 1.38707 * 120.14617 * 359.97438 * 3 2 1 5 5 C 1.38054 * 120.08138 * 180.02562 * 4 3 2 6 6 C 1.38550 * 120.39268 * 359.97438 * 5 4 3 7 7 C 1.37783 * 120.29843 * 0.02562 * 6 5 4 8 8 C 1.39710 * 119.90700 * 359.73083 * 7 6 5 9 9 C 1.47537 * 120.19445 * 180.24991 * 8 7 6 10 10 O 1.21585 * 120.00437 * 180.26853 * 9 8 7 11 11 N 1.34780 * 119.99775 * 0.27128 * 9 8 7 12 12 N 1.40104 * 120.00036 * 180.02562 * 11 9 8 13 13 C 1.34779 * 119.99800 * 174.99355 * 12 11 9 14 14 O 1.21581 * 120.00008 * 5.15755 * 13 12 11 15 15 N 1.34774 * 119.99714 * 185.14915 * 13 12 11 16 16 C 1.46928 * 120.62983 * 185.00753 * 15 13 12 17 17 C 1.52763 * 109.00983 * 233.58907 * 16 15 13 18 18 C 1.53045 * 109.38040 * 305.59204 * 17 16 15 19 19 C 1.50695 * 109.44564 * 181.25692 * 18 17 16 20 20 H 1.08006 * 120.00134 * 239.93778 * 19 18 17 21 21 C 1.37876 * 120.00702 * 59.93474 * 19 18 17 22 22 N 1.31518 * 119.99775 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00443 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47244 * 59.99684 * 23 21 19 25 25 H 1.48504 * 109.47123 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.46983 * 299.99883 * 23 21 19 27 27 C 1.53038 * 109.54119 * 61.23913 * 18 17 16 28 28 C 1.46931 * 120.63192 * 5.29609 * 15 13 12 29 29 H 1.09003 * 109.47993 * 300.00766 * 1 2 3 30 30 H 1.09005 * 109.46952 * 60.00950 * 1 2 3 31 31 H 1.09002 * 109.47326 * 180.02562 * 1 2 3 32 32 H 1.08001 * 119.96418 * 359.97438 * 4 3 2 33 33 H 1.08004 * 119.80356 * 179.97438 * 5 4 3 34 34 H 1.07998 * 119.84869 * 180.02562 * 6 5 4 35 35 H 1.08001 * 120.04597 * 179.97438 * 7 6 5 36 36 H 0.96999 * 119.99892 * 0.02562 * 11 9 8 37 37 H 0.96995 * 120.00213 * 354.98795 * 12 11 9 38 38 H 1.09001 * 109.58728 * 353.42644 * 16 15 13 39 39 H 1.08996 * 109.58517 * 113.84734 * 16 15 13 40 40 H 1.08995 * 109.56723 * 185.55426 * 17 16 15 41 41 H 1.08995 * 109.35687 * 65.49651 * 17 16 15 42 42 H 1.09000 * 109.45672 * 301.21535 * 18 17 16 43 43 H 0.96995 * 120.00365 * 180.02562 * 22 21 19 44 44 H 1.08995 * 109.49714 * 178.68389 * 27 18 17 45 45 H 1.08999 * 109.52162 * 58.60311 * 27 18 17 46 46 H 1.08999 * 109.58347 * 246.15373 * 28 15 13 47 47 H 1.09000 * 109.58309 * 6.43164 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 1.2924 2.3739 -0.0005 5 6 1.9205 3.6033 -0.0011 6 6 3.3037 3.6837 -0.0005 7 6 4.0667 2.5365 0.0000 8 6 3.4440 1.2858 0.0057 9 6 4.2549 0.0532 0.0119 10 8 3.7094 -1.0334 0.0119 11 7 5.6004 0.1318 0.0175 12 7 6.3704 -1.0386 0.0228 13 6 7.7126 -0.9626 -0.0734 14 8 8.2619 0.1221 -0.0702 15 7 8.4459 -2.0890 -0.1728 16 6 9.9140 -2.0294 -0.1683 17 6 10.4455 -2.7606 -1.3997 18 6 9.8737 -4.1798 -1.4338 19 6 10.4213 -4.9127 -2.6313 20 1 9.7485 -5.2938 -3.3854 21 6 11.7812 -5.0967 -2.7645 22 7 12.6006 -4.6330 -1.8462 23 14 12.4601 -6.0045 -4.2493 24 1 12.0723 -5.2852 -5.4892 25 1 13.9408 -6.0685 -4.1560 26 1 11.9067 -7.3821 -4.2827 27 6 8.3477 -4.1147 -1.5298 28 6 7.7924 -3.3994 -0.2943 29 1 -0.3635 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3634 -1.0277 0.0005 32 1 0.2137 2.3195 -0.0014 33 1 1.3302 4.5078 -0.0019 34 1 3.7859 4.6501 -0.0005 35 1 5.1446 2.6039 0.0000 36 1 6.0355 0.9987 0.0179 37 1 5.9376 -1.9036 0.0958 38 1 10.2375 -0.9889 -0.1948 39 1 10.2963 -2.5102 0.7321 40 1 11.5335 -2.8077 -1.3549 41 1 10.1407 -2.2239 -2.2981 42 1 10.1581 -4.7079 -0.5237 43 1 13.5573 -4.7621 -1.9400 44 1 7.9428 -5.1255 -1.5777 45 1 8.0623 -3.5656 -2.4271 46 1 7.9983 -3.9942 0.5957 47 1 6.7164 -3.2626 -0.4014 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000781802801.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:31 Heat of formation + Delta-G solvation = -29.111644 kcal Electronic energy + Delta-G solvation = -30084.917460 eV Core-core repulsion = 25848.975210 eV Total energy + Delta-G solvation = -4235.942250 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.98850 -40.19092 -38.94657 -37.68396 -37.00538 -35.17423 -33.66720 -32.46433 -31.25650 -30.64312 -30.53804 -29.48579 -27.61913 -26.14659 -24.35287 -23.14306 -22.55611 -22.22982 -21.33042 -20.72203 -19.32435 -18.48783 -18.05264 -17.47716 -16.87626 -16.38976 -16.26930 -16.18135 -15.49115 -15.38891 -15.12156 -14.94301 -14.63019 -14.54359 -14.07689 -13.81981 -13.73013 -13.13686 -13.05072 -12.85120 -12.66922 -12.62934 -12.36480 -12.05693 -11.86440 -11.59948 -11.52251 -11.22173 -11.12292 -10.90995 -10.68113 -10.45360 -10.19110 -10.06786 -9.98985 -9.56593 -9.53475 -9.21022 -8.93476 -8.69960 -8.42533 -8.32834 -7.88635 -6.01173 -4.07597 0.44773 0.96332 1.72667 2.58378 2.87161 3.31245 3.32918 3.36279 3.38986 3.51697 3.57823 4.08427 4.30425 4.40975 4.42289 4.63942 4.66231 4.78736 4.84415 4.91790 5.06038 5.16530 5.28605 5.31857 5.34895 5.66742 5.73684 5.77075 5.81229 5.98549 6.00810 6.19978 6.22560 6.41108 6.45501 6.52760 6.63654 6.76664 6.85056 6.96189 6.98287 7.19667 7.27321 7.48899 7.70609 7.93251 8.02548 8.04239 8.12199 8.40986 8.79985 8.95312 9.57359 11.04334 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.021378 B = 0.002031 C = 0.001940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.425501 B =13786.050848 C =14428.864627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.280 6.280 3 C 0.189 3.811 4 C -0.221 4.221 5 C -0.050 4.050 6 C -0.165 4.165 7 C -0.046 4.046 8 C -0.162 4.162 9 C 0.559 3.441 10 O -0.522 6.522 11 N -0.504 5.504 12 N -0.545 5.545 13 C 0.711 3.289 14 O -0.600 6.600 15 N -0.607 5.607 16 C 0.128 3.872 17 C -0.124 4.124 18 C 0.049 3.951 19 C -0.513 4.513 20 H 0.054 0.946 21 C 0.062 3.938 22 N -0.890 5.890 23 Si 0.891 3.109 24 H -0.278 1.278 25 H -0.288 1.288 26 H -0.278 1.278 27 C -0.123 4.123 28 C 0.108 3.892 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.104 0.896 32 H 0.136 0.864 33 H 0.131 0.869 34 H 0.133 0.867 35 H 0.136 0.864 36 H 0.428 0.572 37 H 0.427 0.573 38 H 0.079 0.921 39 H 0.060 0.940 40 H 0.106 0.894 41 H 0.039 0.961 42 H 0.029 0.971 43 H 0.261 0.739 44 H 0.063 0.937 45 H 0.054 0.946 46 H 0.068 0.932 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.962 15.426 6.379 28.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.190 6.190 3 C 0.140 3.860 4 C -0.240 4.240 5 C -0.069 4.069 6 C -0.183 4.183 7 C -0.065 4.065 8 C -0.168 4.168 9 C 0.346 3.654 10 O -0.398 6.398 11 N -0.253 5.253 12 N -0.300 5.300 13 C 0.412 3.588 14 O -0.479 6.479 15 N -0.344 5.344 16 C 0.006 3.994 17 C -0.163 4.163 18 C 0.031 3.969 19 C -0.552 4.552 20 H 0.072 0.928 21 C -0.140 4.140 22 N -0.529 5.529 23 Si 0.719 3.281 24 H -0.204 1.204 25 H -0.213 1.213 26 H -0.203 1.203 27 C -0.162 4.162 28 C -0.015 4.015 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.122 0.878 32 H 0.154 0.846 33 H 0.149 0.851 34 H 0.151 0.849 35 H 0.154 0.846 36 H 0.271 0.729 37 H 0.272 0.728 38 H 0.097 0.903 39 H 0.078 0.922 40 H 0.124 0.876 41 H 0.058 0.942 42 H 0.047 0.953 43 H 0.071 0.929 44 H 0.081 0.919 45 H 0.072 0.928 46 H 0.086 0.914 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -22.638 15.175 6.417 27.999 hybrid contribution 0.143 -0.348 -0.846 0.926 sum -22.495 14.827 5.571 27.512 Atomic orbital electron populations 1.23190 0.78525 1.04533 1.01202 1.86391 1.20931 1.25285 1.86438 1.18986 0.90652 0.85103 0.91210 1.21256 1.00442 0.91948 1.10325 1.21170 0.94762 0.97157 0.93796 1.21018 0.93799 0.98609 1.04895 1.21270 1.00221 0.90798 0.94181 1.18981 0.90547 0.92977 1.14258 1.17990 0.79874 0.89631 0.77886 1.90844 1.70944 1.28285 1.49694 1.44418 1.02888 1.01868 1.76170 1.43898 1.02880 1.01543 1.81691 1.15558 0.79459 0.85273 0.78524 1.90868 1.70475 1.26658 1.59890 1.47392 1.07608 1.04370 1.75040 1.21785 0.75282 1.01814 1.00488 1.21972 1.04090 0.96712 0.93526 1.18631 0.88004 0.92702 0.97594 1.21143 0.91774 1.35301 1.06943 0.92768 1.24961 0.97142 0.95638 0.96222 1.69824 1.03204 1.45944 1.33962 0.86671 0.77755 0.80326 0.83310 1.20356 1.21319 1.20338 1.22009 1.00345 0.98722 0.95083 1.21832 0.95146 0.83881 1.00616 0.92524 0.92496 0.87809 0.84614 0.85134 0.84904 0.84642 0.72918 0.72791 0.90300 0.92161 0.87598 0.94230 0.95338 0.92882 0.91869 0.92758 0.91355 0.92065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.81 101.05 0.99 1.12 16 2 O -0.28 -3.22 8.57 -40.56 -0.35 -3.57 16 3 C 0.19 1.99 6.70 -38.70 -0.26 1.73 16 4 C -0.22 -1.62 9.03 -39.48 -0.36 -1.98 16 5 C -0.05 -0.31 10.03 -39.53 -0.40 -0.71 16 6 C -0.16 -1.10 10.02 -39.63 -0.40 -1.49 16 7 C -0.05 -0.39 9.54 -39.20 -0.37 -0.76 16 8 C -0.16 -1.83 5.89 -104.85 -0.62 -2.44 16 9 C 0.56 7.87 7.88 -12.47 -0.10 7.77 16 10 O -0.52 -8.88 15.01 -16.59 -0.25 -9.13 16 11 N -0.50 -7.00 6.21 30.46 0.19 -6.81 16 12 N -0.54 -8.52 6.12 27.63 0.17 -8.35 16 13 C 0.71 12.88 8.41 -86.92 -0.73 12.15 16 14 O -0.60 -12.20 15.61 5.29 0.08 -12.12 16 15 N -0.61 -11.04 2.98 -178.76 -0.53 -11.57 16 16 C 0.13 2.52 6.41 -3.93 -0.03 2.50 16 17 C -0.12 -2.85 5.14 -26.83 -0.14 -2.99 16 18 C 0.05 1.16 2.07 -91.73 -0.19 0.97 16 19 C -0.51 -13.66 8.56 -34.44 -0.29 -13.96 16 20 H 0.05 1.43 7.74 -52.48 -0.41 1.03 16 21 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 22 N -0.89 -24.64 11.31 55.43 0.63 -24.02 16 23 Si 0.89 21.01 29.54 -169.99 -5.02 15.99 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 25 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 26 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 27 C -0.12 -2.41 5.30 -26.62 -0.14 -2.56 16 28 C 0.11 1.78 6.35 -3.71 -0.02 1.76 16 29 H 0.06 0.27 7.66 -51.93 -0.40 -0.13 16 30 H 0.06 0.27 7.66 -51.93 -0.40 -0.12 16 31 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.14 0.66 6.30 -52.49 -0.33 0.33 16 33 H 0.13 0.44 8.06 -52.48 -0.42 0.02 16 34 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 35 H 0.14 0.93 6.40 -52.49 -0.34 0.60 16 36 H 0.43 5.27 6.04 -182.60 -1.10 4.17 16 37 H 0.43 6.37 5.60 -182.60 -1.02 5.35 16 38 H 0.08 1.57 6.99 -51.93 -0.36 1.21 16 39 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 40 H 0.11 2.69 6.03 -51.93 -0.31 2.38 16 41 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 44 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 45 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 46 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 47 H 0.06 0.87 5.74 -51.93 -0.30 0.57 16 LS Contribution 380.68 15.07 5.74 5.74 Total: -1.00 -33.40 380.68 -10.40 -43.80 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: -7.91 Total: 7.35 kcal Atomic # 6 Polarization: 5.84 SS G_CDS: -3.14 Total: 2.69 kcal Atomic # 7 Polarization: -51.20 SS G_CDS: 0.45 Total: -50.75 kcal Atomic # 8 Polarization: -24.30 SS G_CDS: -0.51 Total: -24.81 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.40 -10.40 -43.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781802801.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.688 kcal (2) G-P(sol) polarization free energy of solvation -33.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds