Wall clock time and date at job start Wed Apr 1 2020 05:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35659 * 117.00035 * 2 1 4 4 C 1.38707 * 120.14617 * 359.97438 * 3 2 1 5 5 C 1.38054 * 120.08138 * 180.02562 * 4 3 2 6 6 C 1.38550 * 120.39268 * 359.97438 * 5 4 3 7 7 C 1.37783 * 120.29843 * 0.02562 * 6 5 4 8 8 C 1.39710 * 119.90700 * 359.73083 * 7 6 5 9 9 C 1.47537 * 120.19445 * 180.24991 * 8 7 6 10 10 O 1.21585 * 120.00437 * 180.26853 * 9 8 7 11 11 N 1.34780 * 119.99775 * 0.27128 * 9 8 7 12 12 N 1.40104 * 120.00036 * 180.02562 * 11 9 8 13 13 C 1.34779 * 119.99800 * 174.99355 * 12 11 9 14 14 O 1.21581 * 120.00008 * 5.15755 * 13 12 11 15 15 N 1.34774 * 119.99714 * 185.14915 * 13 12 11 16 16 C 1.46928 * 120.62983 * 185.00753 * 15 13 12 17 17 C 1.52763 * 109.00983 * 233.58907 * 16 15 13 18 18 C 1.53045 * 109.38040 * 305.59204 * 17 16 15 19 19 C 1.50695 * 109.44564 * 181.25692 * 18 17 16 20 20 H 1.08006 * 120.00134 * 239.93778 * 19 18 17 21 21 C 1.37876 * 120.00702 * 59.93474 * 19 18 17 22 22 N 1.31518 * 119.99775 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00443 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47244 * 59.99684 * 23 21 19 25 25 H 1.48504 * 109.47123 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.46983 * 299.99883 * 23 21 19 27 27 C 1.53038 * 109.54119 * 61.23913 * 18 17 16 28 28 C 1.46931 * 120.63192 * 5.29609 * 15 13 12 29 29 H 1.09003 * 109.47993 * 300.00766 * 1 2 3 30 30 H 1.09005 * 109.46952 * 60.00950 * 1 2 3 31 31 H 1.09002 * 109.47326 * 180.02562 * 1 2 3 32 32 H 1.08001 * 119.96418 * 359.97438 * 4 3 2 33 33 H 1.08004 * 119.80356 * 179.97438 * 5 4 3 34 34 H 1.07998 * 119.84869 * 180.02562 * 6 5 4 35 35 H 1.08001 * 120.04597 * 179.97438 * 7 6 5 36 36 H 0.96999 * 119.99892 * 0.02562 * 11 9 8 37 37 H 0.96995 * 120.00213 * 354.98795 * 12 11 9 38 38 H 1.09001 * 109.58728 * 353.42644 * 16 15 13 39 39 H 1.08996 * 109.58517 * 113.84734 * 16 15 13 40 40 H 1.08995 * 109.56723 * 185.55426 * 17 16 15 41 41 H 1.08995 * 109.35687 * 65.49651 * 17 16 15 42 42 H 1.09000 * 109.45672 * 301.21535 * 18 17 16 43 43 H 0.96995 * 120.00365 * 180.02562 * 22 21 19 44 44 H 1.08995 * 109.49714 * 178.68389 * 27 18 17 45 45 H 1.08999 * 109.52162 * 58.60311 * 27 18 17 46 46 H 1.08999 * 109.58347 * 246.15373 * 28 15 13 47 47 H 1.09000 * 109.58309 * 6.43164 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 1.2924 2.3739 -0.0005 5 6 1.9205 3.6033 -0.0011 6 6 3.3037 3.6837 -0.0005 7 6 4.0667 2.5365 0.0000 8 6 3.4440 1.2858 0.0057 9 6 4.2549 0.0532 0.0119 10 8 3.7094 -1.0334 0.0119 11 7 5.6004 0.1318 0.0175 12 7 6.3704 -1.0386 0.0228 13 6 7.7126 -0.9626 -0.0734 14 8 8.2619 0.1221 -0.0702 15 7 8.4459 -2.0890 -0.1728 16 6 9.9140 -2.0294 -0.1683 17 6 10.4455 -2.7606 -1.3997 18 6 9.8737 -4.1798 -1.4338 19 6 10.4213 -4.9127 -2.6313 20 1 9.7485 -5.2938 -3.3854 21 6 11.7812 -5.0967 -2.7645 22 7 12.6006 -4.6330 -1.8462 23 14 12.4601 -6.0045 -4.2493 24 1 12.0723 -5.2852 -5.4892 25 1 13.9408 -6.0685 -4.1560 26 1 11.9067 -7.3821 -4.2827 27 6 8.3477 -4.1147 -1.5298 28 6 7.7924 -3.3994 -0.2943 29 1 -0.3635 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3634 -1.0277 0.0005 32 1 0.2137 2.3195 -0.0014 33 1 1.3302 4.5078 -0.0019 34 1 3.7859 4.6501 -0.0005 35 1 5.1446 2.6039 0.0000 36 1 6.0355 0.9987 0.0179 37 1 5.9376 -1.9036 0.0958 38 1 10.2375 -0.9889 -0.1948 39 1 10.2963 -2.5102 0.7321 40 1 11.5335 -2.8077 -1.3549 41 1 10.1407 -2.2239 -2.2981 42 1 10.1581 -4.7079 -0.5237 43 1 13.5573 -4.7621 -1.9400 44 1 7.9428 -5.1255 -1.5777 45 1 8.0623 -3.5656 -2.4271 46 1 7.9983 -3.9942 0.5957 47 1 6.7164 -3.2626 -0.4014 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000781802801.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:30 Heat of formation + Delta-G solvation = -49.613643 kcal Electronic energy + Delta-G solvation = -30085.806494 eV Core-core repulsion = 25848.975210 eV Total energy + Delta-G solvation = -4236.831284 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.96734 -41.33460 -40.02688 -38.59361 -38.30407 -36.45992 -35.45952 -33.59627 -32.81358 -32.01335 -31.13110 -30.80077 -28.20251 -27.90409 -25.31015 -24.71879 -23.93326 -23.06397 -22.46541 -22.05563 -20.72847 -19.56050 -19.20792 -18.62832 -18.36842 -17.79272 -17.11135 -16.98877 -16.66953 -16.59265 -16.43603 -16.03346 -15.80830 -15.66793 -15.23303 -14.91934 -14.79472 -14.61682 -14.48249 -14.29560 -14.07150 -13.56715 -13.47393 -13.11966 -13.01574 -12.80481 -12.60069 -12.52633 -12.45802 -12.18275 -12.15229 -12.04261 -11.96044 -11.59462 -11.42655 -11.18729 -10.99269 -10.81154 -10.39633 -10.16661 -9.84943 -9.37275 -9.17501 -8.06699 -6.19937 -0.22340 0.38732 0.51687 1.43040 1.43745 1.50983 1.63749 1.98617 2.22901 2.31425 2.44747 2.79529 3.05375 3.19961 3.60983 3.76486 3.94683 3.99305 4.20354 4.22636 4.27839 4.34734 4.39367 4.39502 4.47350 4.48722 4.55521 4.71855 4.73335 4.79121 4.86010 4.94834 5.08403 5.13762 5.18441 5.29359 5.32174 5.43106 5.45348 5.53039 5.60516 5.72543 5.73020 5.99462 6.12036 6.18199 6.39674 6.40518 6.71853 6.89965 6.90462 7.42937 7.47697 8.96675 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.021378 B = 0.002031 C = 0.001940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.425501 B =13786.050848 C =14428.864627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.317 6.317 3 C 0.170 3.830 4 C -0.220 4.220 5 C -0.039 4.039 6 C -0.163 4.163 7 C -0.050 4.050 8 C -0.194 4.194 9 C 0.559 3.441 10 O -0.559 6.559 11 N -0.502 5.502 12 N -0.539 5.539 13 C 0.712 3.288 14 O -0.623 6.623 15 N -0.610 5.610 16 C 0.140 3.860 17 C -0.113 4.113 18 C 0.046 3.954 19 C -0.534 4.534 20 H 0.050 0.950 21 C 0.015 3.985 22 N -0.913 5.913 23 Si 0.949 3.051 24 H -0.277 1.277 25 H -0.285 1.285 26 H -0.272 1.272 27 C -0.116 4.116 28 C 0.113 3.887 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.107 0.893 32 H 0.161 0.839 33 H 0.167 0.833 34 H 0.161 0.839 35 H 0.144 0.856 36 H 0.434 0.566 37 H 0.431 0.569 38 H 0.076 0.924 39 H 0.069 0.931 40 H 0.078 0.922 41 H 0.021 0.979 42 H 0.009 0.991 43 H 0.261 0.739 44 H 0.074 0.926 45 H 0.043 0.957 46 H 0.086 0.914 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.180 17.140 6.511 31.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.229 6.229 3 C 0.121 3.879 4 C -0.238 4.238 5 C -0.057 4.057 6 C -0.181 4.181 7 C -0.069 4.069 8 C -0.199 4.199 9 C 0.349 3.651 10 O -0.436 6.436 11 N -0.252 5.252 12 N -0.293 5.293 13 C 0.413 3.587 14 O -0.504 6.504 15 N -0.346 5.346 16 C 0.018 3.982 17 C -0.152 4.152 18 C 0.027 3.973 19 C -0.572 4.572 20 H 0.068 0.932 21 C -0.184 4.184 22 N -0.552 5.552 23 Si 0.775 3.225 24 H -0.202 1.202 25 H -0.210 1.210 26 H -0.197 1.197 27 C -0.154 4.154 28 C -0.009 4.009 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.126 0.874 32 H 0.178 0.822 33 H 0.185 0.815 34 H 0.178 0.822 35 H 0.162 0.838 36 H 0.279 0.721 37 H 0.277 0.723 38 H 0.094 0.906 39 H 0.087 0.913 40 H 0.096 0.904 41 H 0.040 0.960 42 H 0.027 0.973 43 H 0.070 0.930 44 H 0.092 0.908 45 H 0.062 0.938 46 H 0.104 0.896 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -24.890 16.893 6.551 30.787 hybrid contribution 0.736 -0.804 -0.893 1.409 sum -24.155 16.089 5.658 29.569 Atomic orbital electron populations 1.23439 0.76464 1.05453 1.02806 1.86329 1.23329 1.26496 1.86754 1.19302 0.90694 0.85902 0.91985 1.21576 1.01612 0.91253 1.09397 1.21657 0.94889 0.97967 0.91234 1.21407 0.94246 0.98989 1.03477 1.21448 1.00949 0.90470 0.94005 1.18993 0.90895 0.92519 1.17522 1.18583 0.79615 0.90349 0.76575 1.90807 1.71472 1.29841 1.51525 1.44590 1.02847 1.01418 1.76367 1.43732 1.02243 1.02609 1.80680 1.15539 0.80067 0.84735 0.78377 1.90847 1.71132 1.27480 1.60969 1.47306 1.06988 1.05140 1.75209 1.21486 0.76483 1.01140 0.99106 1.21729 1.02424 0.96708 0.94309 1.18606 0.90801 0.92300 0.95587 1.21532 0.92149 1.35641 1.07855 0.93159 1.25676 0.97581 0.96499 0.98671 1.69949 1.03249 1.46724 1.35324 0.85751 0.77108 0.79356 0.80244 1.20205 1.21029 1.19671 1.21864 0.97518 0.99781 0.96245 1.21880 0.96357 0.82921 0.99732 0.90765 0.90902 0.87421 0.82152 0.81540 0.82172 0.83804 0.72143 0.72321 0.90566 0.91258 0.90354 0.96008 0.97284 0.92983 0.90752 0.93812 0.89614 0.89304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.15 9.81 113.37 1.11 1.26 16 2 O -0.32 -7.29 8.57 -68.83 -0.59 -7.88 16 3 C 0.17 3.44 6.70 22.84 0.15 3.59 16 4 C -0.22 -2.64 9.03 22.34 0.20 -2.44 16 5 C -0.04 -0.33 10.03 22.30 0.22 -0.11 16 6 C -0.16 -1.66 10.02 22.24 0.22 -1.43 16 7 C -0.05 -0.77 9.54 22.52 0.21 -0.56 16 8 C -0.19 -4.30 5.89 -20.01 -0.12 -4.42 16 9 C 0.56 15.92 7.88 86.70 0.68 16.60 16 10 O -0.56 -19.41 15.01 16.93 0.25 -19.16 16 11 N -0.50 -13.87 6.21 -175.81 -1.09 -14.96 16 12 N -0.54 -16.58 6.12 -184.75 -1.13 -17.71 16 13 C 0.71 25.45 8.41 179.05 1.51 26.95 16 14 O -0.62 -25.19 15.61 -3.97 -0.06 -25.25 16 15 N -0.61 -21.84 2.98 -837.75 -2.50 -24.34 16 16 C 0.14 5.57 6.41 86.22 0.55 6.13 16 17 C -0.11 -5.31 5.14 30.53 0.16 -5.16 16 18 C 0.05 2.19 2.07 -11.51 -0.02 2.17 16 19 C -0.53 -28.83 8.56 25.60 0.22 -28.62 16 20 H 0.05 2.68 7.74 -2.91 -0.02 2.66 16 21 C 0.01 0.80 5.30 84.65 0.45 1.25 16 22 N -0.91 -51.54 11.31 21.45 0.24 -51.30 16 23 Si 0.95 43.42 29.54 68.60 2.03 45.45 16 24 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 25 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 26 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 27 C -0.12 -4.49 5.30 30.67 0.16 -4.33 16 28 C 0.11 3.60 6.35 86.36 0.55 4.15 16 29 H 0.07 0.56 7.66 -2.39 -0.02 0.54 16 30 H 0.07 0.58 7.66 -2.38 -0.02 0.56 16 31 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.16 1.02 6.30 -2.91 -0.02 1.00 16 33 H 0.17 0.22 8.06 -2.91 -0.02 0.20 16 34 H 0.16 0.73 8.06 -2.91 -0.02 0.71 16 35 H 0.14 1.83 6.40 -2.91 -0.02 1.81 16 36 H 0.43 10.60 6.04 -213.32 -1.29 9.31 16 37 H 0.43 12.53 5.60 -213.32 -1.20 11.33 16 38 H 0.08 3.07 6.99 -2.39 -0.02 3.06 16 39 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 40 H 0.08 4.14 6.03 -2.39 -0.01 4.12 16 41 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 43 H 0.26 14.14 8.31 -92.71 -0.77 13.37 16 44 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 45 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 46 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 47 H 0.09 2.36 5.74 -2.39 -0.01 2.35 16 Total: -1.00 -74.26 380.68 1.96 -72.30 By element: Atomic # 1 Polarization: 29.28 SS G_CDS: -1.46 Total: 27.82 kcal Atomic # 6 Polarization: 8.76 SS G_CDS: 6.26 Total: 15.02 kcal Atomic # 7 Polarization: -103.83 SS G_CDS: -4.47 Total: -108.31 kcal Atomic # 8 Polarization: -51.89 SS G_CDS: -0.40 Total: -52.29 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Total: -74.26 1.96 -72.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781802801.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.688 kcal (2) G-P(sol) polarization free energy of solvation -74.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds