Wall clock time and date at job start Wed Apr 1 2020 04:16:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46901 * 111.00384 * 2 1 4 4 C 1.38876 * 110.99896 * 123.95577 * 2 1 3 5 5 C 1.38960 * 120.17395 * 299.99984 * 4 2 1 6 6 C 1.37955 * 120.05933 * 179.70666 * 5 4 2 7 7 C 1.38612 * 120.42550 * 359.97438 * 6 5 4 8 8 N 1.48024 * 119.82355 * 180.02562 * 7 6 5 9 9 O 1.21802 * 119.99697 * 0.02562 * 8 7 6 10 10 O 1.21798 * 120.00346 * 180.02562 * 8 7 6 11 11 C 1.37740 * 120.35263 * 0.02658 * 7 6 5 12 12 C 1.39739 * 119.92951 * 359.97438 * 11 7 6 13 13 C 1.47424 * 120.21057 * 180.02562 * 12 11 7 14 14 O 1.21597 * 120.00099 * 233.91471 * 13 12 11 15 15 N 1.34781 * 120.00174 * 53.91239 * 13 12 11 16 16 C 1.46922 * 120.63009 * 5.50157 * 15 13 12 17 17 C 1.53629 * 108.54459 * 126.36655 * 16 15 13 18 18 C 1.53037 * 109.23607 * 54.85893 * 17 16 15 19 19 C 1.50701 * 109.44553 * 178.49929 * 18 17 16 20 20 H 1.08004 * 120.00260 * 120.06459 * 19 18 17 21 21 C 1.37876 * 119.99833 * 300.05930 * 19 18 17 22 22 N 1.31520 * 119.99739 * 180.02562 * 21 19 18 23 23 Si 1.86794 * 120.00366 * 0.02562 * 21 19 18 24 24 H 1.48498 * 109.47150 * 89.99607 * 23 21 19 25 25 H 1.48499 * 109.47646 * 210.00193 * 23 21 19 26 26 H 1.48504 * 109.46897 * 330.00064 * 23 21 19 27 27 C 1.53039 * 109.54228 * 298.50588 * 18 17 16 28 28 C 1.46921 * 120.62995 * 185.78155 * 15 13 12 29 29 H 1.09008 * 109.46737 * 296.04581 * 1 2 3 30 30 H 1.08999 * 109.46966 * 56.04103 * 1 2 3 31 31 H 1.09000 * 109.47445 * 176.04443 * 1 2 3 32 32 H 1.08994 * 109.47054 * 183.95002 * 3 2 1 33 33 H 1.08996 * 109.47326 * 303.95761 * 3 2 1 34 34 H 1.09008 * 109.46914 * 63.95101 * 3 2 1 35 35 H 1.07997 * 119.96664 * 359.72200 * 5 4 2 36 36 H 1.07998 * 119.78525 * 180.02562 * 6 5 4 37 37 H 1.08006 * 120.03731 * 179.97438 * 11 7 6 38 38 H 1.08992 * 109.59315 * 246.20490 * 16 15 13 39 39 H 1.09001 * 109.58499 * 6.62817 * 16 15 13 40 40 H 1.08998 * 109.63503 * 294.86680 * 17 16 15 41 41 H 1.08995 * 109.43328 * 174.72803 * 17 16 15 42 42 H 1.08992 * 109.46283 * 58.53524 * 18 17 16 43 43 H 0.97007 * 119.99519 * 179.97438 * 22 21 19 44 44 H 1.08997 * 109.49901 * 301.42395 * 27 18 17 45 45 H 1.08993 * 109.50414 * 181.31694 * 27 18 17 46 46 H 1.08992 * 109.59261 * 353.37633 * 28 15 13 47 47 H 1.09005 * 109.58478 * 113.65646 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.9667 -0.7242 1.0754 5 6 1.6562 -0.3457 2.3759 6 6 2.1469 -1.0703 3.4424 7 6 2.9507 -2.1789 3.2272 8 7 3.4696 -2.9471 4.3813 9 8 3.1894 -2.6048 5.5161 10 8 4.1765 -3.9215 4.1960 11 6 3.2694 -2.5694 1.9454 12 6 2.7804 -1.8461 0.8543 13 6 3.1170 -2.2589 -0.5203 14 8 3.6128 -1.4597 -1.2910 15 7 2.8753 -3.5223 -0.9229 16 6 2.1683 -4.4652 -0.0456 17 6 0.9750 -5.0495 -0.8169 18 6 1.4734 -5.6635 -2.1270 19 6 0.3117 -6.2708 -2.8704 20 1 0.0584 -5.9167 -3.8588 21 6 -0.4279 -7.2786 -2.2887 22 7 -1.4415 -7.8089 -2.9377 23 14 0.0096 -7.8908 -0.5790 24 1 -0.7325 -7.0994 0.4350 25 1 -0.3604 -9.3237 -0.4565 26 1 1.4696 -7.7357 -0.3564 27 6 2.1179 -4.5760 -2.9895 28 6 3.3192 -3.9846 -2.2450 29 1 -0.3633 0.4513 0.9234 30 1 -0.3633 0.5740 -0.8524 31 1 -0.3634 -1.0252 -0.0709 32 1 3.0828 1.3431 -0.0708 33 1 1.5899 1.9164 -0.8524 34 1 1.7044 1.8724 0.9234 35 1 1.0300 0.5164 2.5519 36 1 1.9025 -0.7725 4.4513 37 1 3.8964 -3.4338 1.7836 38 1 2.8445 -5.2675 0.2492 39 1 1.8109 -3.9415 0.8411 40 1 0.2575 -4.2586 -1.0355 41 1 0.4952 -5.8199 -0.2133 42 1 2.2092 -6.4374 -1.9086 43 1 -1.9616 -8.5182 -2.5285 44 1 1.3897 -3.7895 -3.1876 45 1 2.4517 -5.0093 -3.9323 46 1 3.7215 -3.1438 -2.8100 47 1 4.0893 -4.7467 -2.1259 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000782055016.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:39 Heat of formation + Delta-G solvation = 13.456498 kcal Electronic energy + Delta-G solvation = -31901.407582 eV Core-core repulsion = 27667.311225 eV Total energy + Delta-G solvation = -4234.096357 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.44259 -41.04869 -39.35737 -37.25180 -37.06083 -36.77876 -33.71611 -32.44689 -31.42275 -31.31643 -30.49019 -28.00204 -27.03937 -26.74939 -24.64795 -24.38531 -22.93395 -22.61833 -21.71647 -20.71821 -19.54874 -18.92741 -18.30241 -17.75620 -17.35691 -17.11443 -16.74743 -16.46376 -15.88945 -15.46586 -15.01973 -14.88896 -14.58450 -14.25800 -13.89655 -13.80029 -13.51731 -13.42157 -13.12366 -12.73263 -12.69725 -12.67024 -12.48425 -12.19627 -12.14723 -12.06859 -11.96544 -11.77666 -11.44593 -11.34036 -11.09531 -10.83109 -10.28112 -10.25803 -9.97642 -9.85868 -9.79665 -9.60406 -9.39147 -9.15154 -8.99137 -8.62540 -8.31010 -6.14971 -4.14513 -0.52701 0.27738 0.95068 1.09622 2.46702 2.80923 3.14302 3.17195 3.21203 3.28522 3.32554 3.90353 3.98523 4.31155 4.31741 4.34120 4.57465 4.75782 4.85164 4.92210 5.04757 5.06619 5.09386 5.14523 5.20256 5.23082 5.40446 5.51168 5.54603 5.56466 5.57281 5.69929 5.73878 5.74111 5.89733 6.08729 6.10499 6.21481 6.36684 6.51112 6.57119 6.66268 6.69887 6.80711 7.10736 7.40453 7.40771 7.52249 7.67291 8.19769 8.44310 8.89536 9.46916 10.98330 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.009684 B = 0.004169 C = 0.003448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2890.737951 B = 6714.788787 C = 8119.052977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.510 5.510 3 C 0.033 3.967 4 C 0.191 3.809 5 C -0.155 4.155 6 C -0.031 4.031 7 C -0.054 4.054 8 N 0.031 4.969 9 O -0.160 6.160 10 O -0.155 6.155 11 C -0.019 4.019 12 C -0.097 4.097 13 C 0.571 3.429 14 O -0.519 6.519 15 N -0.594 5.594 16 C 0.098 3.902 17 C -0.132 4.132 18 C 0.015 3.985 19 C -0.513 4.513 20 H 0.074 0.926 21 C 0.070 3.930 22 N -0.899 5.899 23 Si 0.883 3.117 24 H -0.280 1.280 25 H -0.296 1.296 26 H -0.264 1.264 27 C -0.112 4.112 28 C 0.111 3.889 29 H 0.035 0.965 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.032 0.968 35 H 0.151 0.849 36 H 0.157 0.843 37 H 0.162 0.838 38 H 0.070 0.930 39 H 0.066 0.934 40 H 0.065 0.935 41 H 0.058 0.942 42 H 0.029 0.971 43 H 0.264 0.736 44 H 0.060 0.940 45 H 0.070 0.930 46 H 0.086 0.914 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.605 17.282 11.462 21.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.231 5.231 3 C -0.112 4.112 4 C 0.095 3.905 5 C -0.176 4.176 6 C -0.051 4.051 7 C -0.137 4.137 8 N 0.551 4.449 9 O -0.376 6.376 10 O -0.371 6.371 11 C -0.039 4.039 12 C -0.102 4.102 13 C 0.357 3.643 14 O -0.395 6.395 15 N -0.327 5.327 16 C -0.025 4.025 17 C -0.170 4.170 18 C -0.004 4.004 19 C -0.551 4.551 20 H 0.092 0.908 21 C -0.132 4.132 22 N -0.537 5.537 23 Si 0.713 3.287 24 H -0.207 1.207 25 H -0.223 1.223 26 H -0.189 1.189 27 C -0.150 4.150 28 C -0.011 4.011 29 H 0.053 0.947 30 H 0.103 0.897 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.100 0.900 34 H 0.050 0.950 35 H 0.168 0.832 36 H 0.175 0.825 37 H 0.180 0.820 38 H 0.088 0.912 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.076 0.924 42 H 0.047 0.953 43 H 0.074 0.926 44 H 0.079 0.921 45 H 0.088 0.912 46 H 0.104 0.896 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.617 17.727 9.998 21.401 hybrid contribution -0.280 -0.366 2.127 2.177 sum 6.338 17.361 12.126 22.105 Atomic orbital electron populations 1.22579 0.84230 1.03814 1.01531 1.59283 1.09188 1.15212 1.39394 1.22468 1.01810 0.85819 1.01145 1.19089 0.90804 0.91153 0.89476 1.21704 1.02501 1.01718 0.91650 1.20980 0.91746 0.90659 1.01740 1.20939 1.07677 0.98917 0.86121 1.43524 0.98932 1.00303 1.02184 1.94532 1.62308 1.72760 1.07957 1.94579 1.33832 1.16686 1.92047 1.21159 0.95627 0.98252 0.88840 1.19984 1.00139 0.95820 0.94275 1.17533 0.79128 0.82017 0.85647 1.90774 1.44162 1.50885 1.53666 1.48054 1.56105 1.10441 1.18079 1.22136 0.95553 0.92171 0.92643 1.22447 0.95685 1.00053 0.98847 1.19136 0.96623 0.93306 0.91356 1.21030 1.12047 1.18377 1.03654 0.90769 1.25035 0.94659 0.96021 0.97492 1.69899 1.19146 1.26632 1.38069 0.86918 0.79465 0.77247 0.85056 1.20692 1.22298 1.18863 1.21815 0.95663 0.98878 0.98648 1.21832 0.97653 0.99327 0.82254 0.94663 0.89740 0.90436 0.90426 0.89967 0.94953 0.83182 0.82515 0.82009 0.91207 0.91548 0.91604 0.92393 0.95267 0.92613 0.92149 0.91160 0.89556 0.91643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.34 60.07 0.56 0.78 16 2 N -0.51 -5.52 4.07 -186.63 -0.76 -6.28 16 3 C 0.03 0.28 9.38 60.07 0.56 0.84 16 4 C 0.19 2.08 4.71 -83.61 -0.39 1.68 16 5 C -0.15 -1.26 8.55 -39.42 -0.34 -1.60 16 6 C -0.03 -0.27 9.54 -39.55 -0.38 -0.65 16 7 C -0.05 -0.60 6.84 -79.99 -0.55 -1.14 16 8 N 0.03 0.40 4.45 33.94 0.15 0.55 16 9 O -0.16 -2.09 18.43 -29.46 -0.54 -2.64 16 10 O -0.15 -2.19 18.43 -29.46 -0.54 -2.73 16 11 C -0.02 -0.22 7.26 -39.20 -0.28 -0.50 16 12 C -0.10 -1.24 4.62 -104.80 -0.48 -1.72 16 13 C 0.57 8.85 6.79 -12.52 -0.08 8.76 16 14 O -0.52 -9.25 16.10 5.28 0.09 -9.17 16 15 N -0.59 -9.39 2.97 -173.77 -0.52 -9.91 16 16 C 0.10 1.54 5.59 -3.49 -0.02 1.52 16 17 C -0.13 -2.60 4.86 -26.39 -0.13 -2.73 16 18 C 0.01 0.32 1.65 -91.73 -0.15 0.17 16 19 C -0.51 -13.68 9.14 -34.44 -0.31 -13.99 16 20 H 0.07 2.16 7.99 -52.48 -0.42 1.74 16 21 C 0.07 1.93 5.45 -17.82 -0.10 1.83 16 22 N -0.90 -26.75 13.96 55.43 0.77 -25.98 16 23 Si 0.88 20.90 24.38 -169.99 -4.14 16.76 16 24 H -0.28 -6.42 6.86 56.52 0.39 -6.03 16 25 H -0.30 -7.13 7.11 56.52 0.40 -6.73 16 26 H -0.26 -5.86 6.53 56.52 0.37 -5.49 16 27 C -0.11 -2.08 5.30 -26.61 -0.14 -2.22 16 28 C 0.11 1.77 6.44 -3.71 -0.02 1.74 16 29 H 0.03 0.24 7.12 -51.92 -0.37 -0.13 16 30 H 0.08 0.67 8.12 -51.93 -0.42 0.25 16 31 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.08 0.61 8.12 -51.93 -0.42 0.19 16 34 H 0.03 0.20 7.33 -51.92 -0.38 -0.18 16 35 H 0.15 0.81 7.01 -52.49 -0.37 0.44 16 36 H 0.16 1.04 7.59 -52.49 -0.40 0.64 16 37 H 0.16 1.84 7.28 -52.48 -0.38 1.46 16 38 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.07 0.94 5.37 -51.93 -0.28 0.66 16 40 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 41 H 0.06 1.22 3.24 -51.93 -0.17 1.05 16 42 H 0.03 0.65 7.20 -51.93 -0.37 0.27 16 43 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 44 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 45 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 46 H 0.09 1.37 7.00 -51.93 -0.36 1.00 16 47 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 377.39 15.07 5.69 5.69 Total: -1.00 -31.82 377.39 -8.56 -40.38 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -6.49 Total: 0.55 kcal Atomic # 6 Polarization: -4.97 SS G_CDS: -2.26 Total: -7.23 kcal Atomic # 7 Polarization: -41.27 SS G_CDS: -0.35 Total: -41.62 kcal Atomic # 8 Polarization: -13.53 SS G_CDS: -1.00 Total: -14.53 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -4.14 Total: 16.76 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.82 -8.56 -40.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782055016.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.835 kcal (2) G-P(sol) polarization free energy of solvation -31.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds