Wall clock time and date at job start Wed Apr 1 2020 04:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46901 * 111.00384 * 2 1 4 4 C 1.38876 * 110.99896 * 123.95577 * 2 1 3 5 5 C 1.38960 * 120.17395 * 299.99984 * 4 2 1 6 6 C 1.37955 * 120.05933 * 179.70666 * 5 4 2 7 7 C 1.38612 * 120.42550 * 359.97438 * 6 5 4 8 8 N 1.48024 * 119.82355 * 180.02562 * 7 6 5 9 9 O 1.21802 * 119.99697 * 0.02562 * 8 7 6 10 10 O 1.21798 * 120.00346 * 180.02562 * 8 7 6 11 11 C 1.37740 * 120.35263 * 0.02658 * 7 6 5 12 12 C 1.39739 * 119.92951 * 359.97438 * 11 7 6 13 13 C 1.47424 * 120.21057 * 180.02562 * 12 11 7 14 14 O 1.21597 * 120.00099 * 233.91471 * 13 12 11 15 15 N 1.34781 * 120.00174 * 53.91239 * 13 12 11 16 16 C 1.46922 * 120.63009 * 5.50157 * 15 13 12 17 17 C 1.53629 * 108.54459 * 126.36655 * 16 15 13 18 18 C 1.53037 * 109.23607 * 54.85893 * 17 16 15 19 19 C 1.50701 * 109.44553 * 178.49929 * 18 17 16 20 20 H 1.08004 * 120.00260 * 120.06459 * 19 18 17 21 21 C 1.37876 * 119.99833 * 300.05930 * 19 18 17 22 22 N 1.31520 * 119.99739 * 180.02562 * 21 19 18 23 23 Si 1.86794 * 120.00366 * 0.02562 * 21 19 18 24 24 H 1.48498 * 109.47150 * 89.99607 * 23 21 19 25 25 H 1.48499 * 109.47646 * 210.00193 * 23 21 19 26 26 H 1.48504 * 109.46897 * 330.00064 * 23 21 19 27 27 C 1.53039 * 109.54228 * 298.50588 * 18 17 16 28 28 C 1.46921 * 120.62995 * 185.78155 * 15 13 12 29 29 H 1.09008 * 109.46737 * 296.04581 * 1 2 3 30 30 H 1.08999 * 109.46966 * 56.04103 * 1 2 3 31 31 H 1.09000 * 109.47445 * 176.04443 * 1 2 3 32 32 H 1.08994 * 109.47054 * 183.95002 * 3 2 1 33 33 H 1.08996 * 109.47326 * 303.95761 * 3 2 1 34 34 H 1.09008 * 109.46914 * 63.95101 * 3 2 1 35 35 H 1.07997 * 119.96664 * 359.72200 * 5 4 2 36 36 H 1.07998 * 119.78525 * 180.02562 * 6 5 4 37 37 H 1.08006 * 120.03731 * 179.97438 * 11 7 6 38 38 H 1.08992 * 109.59315 * 246.20490 * 16 15 13 39 39 H 1.09001 * 109.58499 * 6.62817 * 16 15 13 40 40 H 1.08998 * 109.63503 * 294.86680 * 17 16 15 41 41 H 1.08995 * 109.43328 * 174.72803 * 17 16 15 42 42 H 1.08992 * 109.46283 * 58.53524 * 18 17 16 43 43 H 0.97007 * 119.99519 * 179.97438 * 22 21 19 44 44 H 1.08997 * 109.49901 * 301.42395 * 27 18 17 45 45 H 1.08993 * 109.50414 * 181.31694 * 27 18 17 46 46 H 1.08992 * 109.59261 * 353.37633 * 28 15 13 47 47 H 1.09005 * 109.58478 * 113.65646 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.9667 -0.7242 1.0754 5 6 1.6562 -0.3457 2.3759 6 6 2.1469 -1.0703 3.4424 7 6 2.9507 -2.1789 3.2272 8 7 3.4696 -2.9471 4.3813 9 8 3.1894 -2.6048 5.5161 10 8 4.1765 -3.9215 4.1960 11 6 3.2694 -2.5694 1.9454 12 6 2.7804 -1.8461 0.8543 13 6 3.1170 -2.2589 -0.5203 14 8 3.6128 -1.4597 -1.2910 15 7 2.8753 -3.5223 -0.9229 16 6 2.1683 -4.4652 -0.0456 17 6 0.9750 -5.0495 -0.8169 18 6 1.4734 -5.6635 -2.1270 19 6 0.3117 -6.2708 -2.8704 20 1 0.0584 -5.9167 -3.8588 21 6 -0.4279 -7.2786 -2.2887 22 7 -1.4415 -7.8089 -2.9377 23 14 0.0096 -7.8908 -0.5790 24 1 -0.7325 -7.0994 0.4350 25 1 -0.3604 -9.3237 -0.4565 26 1 1.4696 -7.7357 -0.3564 27 6 2.1179 -4.5760 -2.9895 28 6 3.3192 -3.9846 -2.2450 29 1 -0.3633 0.4513 0.9234 30 1 -0.3633 0.5740 -0.8524 31 1 -0.3634 -1.0252 -0.0709 32 1 3.0828 1.3431 -0.0708 33 1 1.5899 1.9164 -0.8524 34 1 1.7044 1.8724 0.9234 35 1 1.0300 0.5164 2.5519 36 1 1.9025 -0.7725 4.4513 37 1 3.8964 -3.4338 1.7836 38 1 2.8445 -5.2675 0.2492 39 1 1.8109 -3.9415 0.8411 40 1 0.2575 -4.2586 -1.0355 41 1 0.4952 -5.8199 -0.2133 42 1 2.2092 -6.4374 -1.9086 43 1 -1.9616 -8.5182 -2.5285 44 1 1.3897 -3.7895 -3.1876 45 1 2.4517 -5.0093 -3.9323 46 1 3.7215 -3.1438 -2.8100 47 1 4.0893 -4.7467 -2.1259 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000782055016.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:38 Heat of formation + Delta-G solvation = -5.860827 kcal Electronic energy + Delta-G solvation = -31902.245245 eV Core-core repulsion = 27667.311225 eV Total energy + Delta-G solvation = -4234.934019 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -43.36068 -42.00847 -40.46846 -38.50559 -38.00103 -37.73494 -35.38382 -33.80375 -32.85263 -32.20559 -31.80963 -28.63715 -28.39987 -27.87705 -25.85702 -25.14566 -24.31238 -24.06802 -22.58226 -21.92440 -20.85833 -19.85743 -19.50000 -18.87962 -18.67891 -18.21204 -18.03542 -17.37522 -17.01755 -16.66389 -16.18541 -15.95177 -15.71791 -15.22512 -15.12446 -14.97464 -14.85945 -14.51983 -14.35836 -14.21365 -13.94174 -13.75348 -13.48756 -13.35441 -13.25446 -12.96774 -12.85549 -12.75058 -12.74080 -12.38857 -12.34028 -12.33615 -12.13494 -11.89015 -11.53718 -11.26778 -11.08011 -11.04562 -10.70905 -10.58548 -10.47705 -9.70205 -9.63257 -8.29894 -6.34140 -1.40158 -0.52055 0.07053 0.22076 1.28278 1.36261 1.43924 1.47061 1.77980 2.10849 2.31585 2.49909 3.00990 3.05805 3.22245 3.52320 3.60089 3.73872 3.84749 4.01220 4.06072 4.11428 4.20684 4.27178 4.29425 4.32859 4.38399 4.44189 4.48163 4.50046 4.52339 4.65904 4.74221 4.77255 4.90484 4.91290 4.93484 4.96872 4.97914 5.09501 5.20198 5.34904 5.52143 5.65856 5.70583 5.72783 5.98431 6.28827 6.30816 6.41347 6.73139 6.99709 7.31263 8.87124 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.009684 B = 0.004169 C = 0.003448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2890.737951 B = 6714.788787 C = 8119.052977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.540 5.540 3 C 0.035 3.965 4 C 0.192 3.808 5 C -0.138 4.138 6 C -0.014 4.014 7 C -0.063 4.063 8 N 0.032 4.968 9 O -0.151 6.151 10 O -0.193 6.193 11 C -0.018 4.018 12 C -0.121 4.121 13 C 0.574 3.426 14 O -0.548 6.548 15 N -0.599 5.599 16 C 0.107 3.893 17 C -0.128 4.128 18 C 0.014 3.986 19 C -0.518 4.518 20 H 0.030 0.970 21 C 0.011 3.989 22 N -0.952 5.952 23 Si 0.943 3.057 24 H -0.265 1.265 25 H -0.302 1.302 26 H -0.236 1.236 27 C -0.104 4.104 28 C 0.118 3.882 29 H 0.064 0.936 30 H 0.088 0.912 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.087 0.913 34 H 0.061 0.939 35 H 0.188 0.812 36 H 0.185 0.815 37 H 0.160 0.840 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.053 0.947 41 H 0.050 0.950 42 H 0.034 0.966 43 H 0.265 0.735 44 H 0.042 0.958 45 H 0.069 0.931 46 H 0.087 0.913 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.208 19.350 14.759 25.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.262 5.262 3 C -0.110 4.110 4 C 0.095 3.905 5 C -0.159 4.159 6 C -0.033 4.033 7 C -0.146 4.146 8 N 0.549 4.451 9 O -0.371 6.371 10 O -0.401 6.401 11 C -0.038 4.038 12 C -0.126 4.126 13 C 0.362 3.638 14 O -0.426 6.426 15 N -0.331 5.331 16 C -0.015 4.015 17 C -0.166 4.166 18 C -0.005 4.005 19 C -0.556 4.556 20 H 0.048 0.952 21 C -0.186 4.186 22 N -0.592 5.592 23 Si 0.770 3.230 24 H -0.191 1.191 25 H -0.230 1.230 26 H -0.159 1.159 27 C -0.142 4.142 28 C -0.003 4.003 29 H 0.083 0.917 30 H 0.107 0.893 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.106 0.894 34 H 0.080 0.920 35 H 0.205 0.795 36 H 0.202 0.798 37 H 0.178 0.822 38 H 0.104 0.896 39 H 0.106 0.894 40 H 0.072 0.928 41 H 0.068 0.932 42 H 0.052 0.948 43 H 0.074 0.926 44 H 0.061 0.939 45 H 0.087 0.913 46 H 0.106 0.894 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 7.276 19.774 13.273 24.902 hybrid contribution -0.556 -0.861 0.977 1.416 sum 6.720 18.912 14.250 24.615 Atomic orbital electron populations 1.22584 0.83234 1.02865 1.03321 1.59222 1.10250 1.16566 1.40137 1.22484 1.00698 0.84900 1.02945 1.19280 0.90043 0.90341 0.90787 1.21999 1.01822 1.02161 0.89875 1.21360 0.89723 0.88990 1.03272 1.21016 1.08744 0.99744 0.85123 1.43747 0.98610 1.00187 1.02547 1.94506 1.61673 1.72376 1.08581 1.94587 1.35398 1.17921 1.92225 1.21061 0.95592 0.98232 0.88949 1.19786 1.02554 0.97588 0.92700 1.17904 0.78069 0.81242 0.86634 1.90752 1.45350 1.51440 1.55018 1.48088 1.56267 1.10871 1.17889 1.22059 0.94178 0.92767 0.92536 1.22267 0.97064 0.99455 0.97862 1.19097 0.94771 0.94138 0.92458 1.21361 1.13497 1.18326 1.02393 0.95195 1.25906 0.94421 0.96287 1.01938 1.70065 1.20962 1.27813 1.40387 0.85927 0.80982 0.76145 0.79973 1.19116 1.23015 1.15902 1.21677 0.96335 0.97551 0.98679 1.21710 0.96490 0.99745 0.82385 0.91713 0.89297 0.92552 0.92125 0.89431 0.92027 0.79481 0.79774 0.82202 0.89567 0.89417 0.92813 0.93213 0.94797 0.92650 0.93944 0.91273 0.89423 0.89641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 9.34 127.69 1.19 1.58 16 2 N -0.54 -10.44 4.07 -744.36 -3.03 -13.47 16 3 C 0.03 0.49 9.38 127.69 1.20 1.69 16 4 C 0.19 3.61 4.71 38.71 0.18 3.79 16 5 C -0.14 -1.59 8.55 22.38 0.19 -1.40 16 6 C -0.01 -0.18 9.54 22.29 0.21 0.03 16 7 C -0.06 -1.22 6.84 36.35 0.25 -0.97 16 8 N 0.03 0.76 4.45 -46.53 -0.21 0.56 16 9 O -0.15 -3.52 18.43 18.88 0.35 -3.18 16 10 O -0.19 -5.22 18.43 18.89 0.35 -4.87 16 11 C -0.02 -0.39 7.26 22.51 0.16 -0.22 16 12 C -0.12 -2.85 4.62 -19.98 -0.09 -2.94 16 13 C 0.57 17.14 6.79 86.66 0.59 17.72 16 14 O -0.55 -19.27 16.10 -4.02 -0.06 -19.34 16 15 N -0.60 -18.12 2.97 -821.95 -2.44 -20.56 16 16 C 0.11 3.15 5.59 86.51 0.48 3.63 16 17 C -0.13 -4.89 4.86 30.82 0.15 -4.74 16 18 C 0.01 0.61 1.65 -11.51 -0.02 0.59 16 19 C -0.52 -28.57 9.14 25.60 0.23 -28.34 16 20 H 0.03 1.85 7.99 -2.91 -0.02 1.83 16 21 C 0.01 0.64 5.45 84.65 0.46 1.10 16 22 N -0.95 -58.76 13.96 21.45 0.30 -58.46 16 23 Si 0.94 42.79 24.38 68.60 1.67 44.46 16 24 H -0.27 -11.34 6.86 99.48 0.68 -10.65 16 25 H -0.30 -13.97 7.11 99.48 0.71 -13.27 16 26 H -0.24 -9.54 6.53 99.48 0.65 -8.89 16 27 C -0.10 -3.91 5.30 30.67 0.16 -3.75 16 28 C 0.12 3.67 6.44 86.37 0.56 4.22 16 29 H 0.06 0.58 7.12 -2.38 -0.02 0.57 16 30 H 0.09 1.24 8.12 -2.39 -0.02 1.22 16 31 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.09 1.11 8.12 -2.39 -0.02 1.09 16 34 H 0.06 0.49 7.33 -2.38 -0.02 0.48 16 35 H 0.19 0.79 7.01 -2.91 -0.02 0.77 16 36 H 0.19 1.40 7.59 -2.91 -0.02 1.38 16 37 H 0.16 3.37 7.28 -2.91 -0.02 3.35 16 38 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 39 H 0.09 2.25 5.37 -2.39 -0.01 2.23 16 40 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 41 H 0.05 1.98 3.24 -2.39 -0.01 1.98 16 42 H 0.03 1.45 7.20 -2.39 -0.02 1.43 16 43 H 0.26 15.34 8.31 -92.70 -0.77 14.57 16 44 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 45 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 46 H 0.09 2.73 7.00 -2.39 -0.02 2.71 16 47 H 0.09 2.33 8.14 -2.38 -0.02 2.31 16 Total: -1.00 -72.74 377.39 3.76 -68.98 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: 0.92 Total: 13.86 kcal Atomic # 6 Polarization: -13.91 SS G_CDS: 5.91 Total: -7.99 kcal Atomic # 7 Polarization: -86.55 SS G_CDS: -5.37 Total: -91.93 kcal Atomic # 8 Polarization: -28.01 SS G_CDS: 0.63 Total: -27.38 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 1.67 Total: 44.46 kcal Total: -72.74 3.76 -68.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782055016.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.117 kcal (2) G-P(sol) polarization free energy of solvation -72.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds