Wall clock time and date at job start Wed Apr 1 2020 04:47:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34775 * 119.99667 * 2 1 4 4 O 1.21550 * 120.00328 * 0.02562 * 3 2 1 5 5 C 1.47850 * 120.00003 * 180.27806 * 3 2 1 6 6 C 1.39575 * 120.13951 * 359.45098 * 5 3 2 7 7 C 1.37962 * 119.85231 * 179.74629 * 6 5 3 8 8 C 1.38365 * 120.13983 * 0.53155 * 7 6 5 9 9 C 1.50707 * 119.85008 * 179.76761 * 8 7 6 10 10 N 1.46500 * 109.46638 * 269.97853 * 9 8 7 11 11 C 1.34775 * 119.99582 * 180.02562 * 10 9 8 12 12 O 1.21585 * 120.00599 * 359.97438 * 11 10 9 13 13 N 1.34778 * 120.00100 * 180.02562 * 11 10 9 14 14 C 1.47021 * 125.64573 * 359.68226 * 13 11 10 15 15 C 1.54338 * 107.26900 * 178.85585 * 14 13 11 16 16 C 1.55163 * 103.01512 * 338.14327 * 15 14 13 17 17 O 1.42905 * 111.00189 * 277.23061 * 16 15 14 18 18 C 1.50699 * 111.03362 * 153.39723 * 16 15 14 19 19 H 1.07998 * 119.99739 * 272.60275 * 18 16 15 20 20 C 1.37879 * 120.00061 * 92.61456 * 18 16 15 21 21 N 1.31519 * 119.99878 * 173.52042 * 20 18 16 22 22 Si 1.86797 * 120.00170 * 353.50824 * 20 18 16 23 23 H 1.48498 * 109.46952 * 87.32610 * 22 20 18 24 24 H 1.48497 * 109.47403 * 207.32901 * 22 20 18 25 25 H 1.48506 * 109.47273 * 327.33296 * 22 20 18 26 26 C 1.47425 * 125.65205 * 179.97438 * 13 11 10 27 27 C 1.38350 * 120.29419 * 359.74286 * 8 7 6 28 28 C 1.37957 * 120.14855 * 359.97438 * 27 8 7 29 29 H 1.09004 * 109.46941 * 299.99173 * 1 2 3 30 30 H 1.08999 * 109.47551 * 59.99293 * 1 2 3 31 31 H 1.08997 * 109.46752 * 179.97438 * 1 2 3 32 32 H 0.97000 * 119.99894 * 180.02562 * 2 1 3 33 33 H 1.08002 * 120.07560 * 359.97438 * 6 5 3 34 34 H 1.08003 * 119.93211 * 180.27692 * 7 6 5 35 35 H 1.09000 * 109.47031 * 29.97696 * 9 8 7 36 36 H 1.08993 * 109.46728 * 149.97728 * 9 8 7 37 37 H 0.97002 * 120.00716 * 359.97438 * 10 9 8 38 38 H 1.09004 * 109.88756 * 298.39901 * 14 13 11 39 39 H 1.08998 * 109.88388 * 59.56376 * 14 13 11 40 40 H 1.09000 * 110.85487 * 219.67917 * 15 14 13 41 41 H 1.08992 * 110.51845 * 96.44886 * 15 14 13 42 42 H 0.96703 * 113.99979 * 168.40255 * 17 16 15 43 43 H 0.97000 * 119.99518 * 179.97438 * 21 20 18 44 44 H 1.08997 * 110.36319 * 322.92614 * 26 13 11 45 45 H 1.09003 * 110.36726 * 85.13959 * 26 13 11 46 46 H 1.08006 * 119.92833 * 179.97438 * 27 8 7 47 47 H 1.08001 * 120.07847 * 180.02562 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5311 2.2199 0.0005 5 6 3.6173 1.1673 -0.0062 6 6 4.3182 -0.0397 -0.0005 7 6 5.6978 -0.0327 -0.0117 8 6 6.3865 1.1674 -0.0174 9 6 7.8935 1.1674 -0.0242 10 7 8.3880 1.1708 1.3548 11 6 9.7142 1.1719 1.5950 12 8 10.5002 1.1696 0.6674 13 7 10.1693 1.1746 2.8637 14 6 9.3340 1.1831 4.0735 15 6 10.2861 1.1537 5.2878 16 6 11.5937 0.5676 4.6926 17 8 11.5380 -0.8594 4.6404 18 6 12.7977 1.0302 5.4719 19 1 13.2814 1.9613 5.2160 20 6 13.2818 0.2648 6.5115 21 7 14.4043 0.6011 7.1086 22 14 12.3432 -1.2499 7.0721 23 1 12.7673 -2.4219 6.2648 24 1 12.6294 -1.5070 8.5063 25 1 10.8865 -1.0250 6.8905 26 6 11.5870 1.1755 3.2680 27 6 5.6977 2.3673 -0.0173 28 6 4.3182 2.3743 -0.0120 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.9500 -0.8400 -0.0004 33 1 3.7818 -0.9770 0.0089 34 1 6.2414 -0.9659 -0.0118 35 1 8.2545 0.2761 -0.5375 36 1 8.2544 2.0560 -0.5419 37 1 7.7611 1.1730 2.0950 38 1 8.7264 2.0877 4.0983 39 1 8.6919 0.3024 4.0869 40 1 9.8950 0.5056 6.0720 41 1 10.4531 2.1619 5.6668 42 1 12.2466 -1.2618 4.1197 43 1 14.7446 0.0628 7.8402 44 1 12.1754 0.5582 2.5893 45 1 11.9755 2.1938 3.2867 46 1 6.2413 3.3006 -0.0213 47 1 3.7817 3.3116 -0.0124 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000825697235.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:45 Heat of formation + Delta-G solvation = -77.100071 kcal Electronic energy + Delta-G solvation = -29620.221263 eV Core-core repulsion = 25382.198078 eV Total energy + Delta-G solvation = -4238.023185 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.70599 -39.98331 -38.94460 -37.77920 -35.19301 -34.91869 -34.74042 -32.39280 -31.95878 -31.44730 -30.25027 -28.47351 -27.86982 -26.24047 -24.84394 -23.13911 -22.77963 -22.35394 -20.78892 -19.92551 -19.78272 -18.77072 -18.05325 -17.42446 -16.70204 -16.14795 -15.76422 -15.69299 -15.54949 -15.35530 -15.20027 -15.09632 -14.72103 -14.26462 -14.03803 -13.87034 -13.72593 -13.58066 -13.51598 -12.82282 -12.75024 -12.72059 -12.65777 -12.42488 -12.02078 -11.87989 -11.63603 -11.58040 -11.47924 -11.05107 -10.52767 -10.45599 -10.40724 -10.23053 -9.98067 -9.70472 -9.45952 -9.29362 -9.24199 -9.09780 -8.69209 -8.54643 -8.03914 -6.20900 -4.33051 0.28980 0.91371 2.32537 2.68153 2.93413 3.43727 3.44844 3.45582 3.50435 3.67016 4.11135 4.26211 4.27945 4.37094 4.47867 4.50235 4.71780 4.87440 4.91906 4.99571 5.00583 5.11747 5.21897 5.29207 5.31554 5.35028 5.52880 5.54547 5.57309 5.74773 5.76708 5.83140 5.84898 5.87938 6.06279 6.11614 6.38034 6.45750 6.48080 6.51045 6.62751 6.70085 6.93134 7.02787 7.27611 7.45823 7.70159 8.10601 8.22339 8.60054 8.79855 8.82682 9.40399 10.87876 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018608 B = 0.001998 C = 0.001896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.336014 B =14010.224095 C =14765.729373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.733 5.733 3 C 0.558 3.442 4 O -0.535 6.535 5 C -0.134 4.134 6 C -0.088 4.088 7 C -0.106 4.106 8 C -0.076 4.076 9 C 0.177 3.823 10 N -0.746 5.746 11 C 0.720 3.280 12 O -0.597 6.597 13 N -0.627 5.627 14 C 0.101 3.899 15 C -0.120 4.120 16 C 0.219 3.781 17 O -0.559 6.559 18 C -0.552 4.552 19 H 0.082 0.918 20 C 0.074 3.926 21 N -0.887 5.887 22 Si 0.952 3.048 23 H -0.293 1.293 24 H -0.327 1.327 25 H -0.270 1.270 26 C 0.108 3.892 27 C -0.106 4.106 28 C -0.060 4.060 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.077 0.923 32 H 0.402 0.598 33 H 0.127 0.873 34 H 0.133 0.867 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.396 0.604 38 H 0.055 0.945 39 H 0.057 0.943 40 H 0.080 0.920 41 H 0.085 0.915 42 H 0.371 0.629 43 H 0.267 0.733 44 H 0.070 0.930 45 H 0.070 0.930 46 H 0.134 0.866 47 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.818 -2.862 -14.055 28.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.385 5.385 3 C 0.346 3.654 4 O -0.412 6.412 5 C -0.137 4.137 6 C -0.107 4.107 7 C -0.125 4.125 8 C -0.077 4.077 9 C 0.053 3.947 10 N -0.403 5.403 11 C 0.422 3.578 12 O -0.476 6.476 13 N -0.364 5.364 14 C -0.022 4.022 15 C -0.158 4.158 16 C 0.179 3.821 17 O -0.367 6.367 18 C -0.590 4.590 19 H 0.100 0.900 20 C -0.131 4.131 21 N -0.522 5.522 22 Si 0.788 3.212 23 H -0.221 1.221 24 H -0.258 1.258 25 H -0.196 1.196 26 C -0.014 4.014 27 C -0.125 4.125 28 C -0.079 4.079 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.096 0.904 32 H 0.237 0.763 33 H 0.145 0.855 34 H 0.151 0.849 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.230 0.770 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.098 0.902 41 H 0.104 0.896 42 H 0.219 0.781 43 H 0.076 0.924 44 H 0.088 0.912 45 H 0.088 0.912 46 H 0.152 0.848 47 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -25.100 -2.021 -14.335 28.976 hybrid contribution -0.073 -1.297 0.384 1.354 sum -25.173 -3.318 -13.951 28.970 Atomic orbital electron populations 1.21577 0.79040 1.02473 1.02601 1.45721 1.08033 1.08663 1.76061 1.18354 0.87336 0.83737 0.75996 1.90786 1.69959 1.31152 1.49348 1.19936 0.92508 0.94714 1.06566 1.21258 0.94476 0.96806 0.98146 1.21095 0.93766 0.98163 0.99449 1.20212 0.95530 0.93462 0.98490 1.20024 0.87744 1.03463 0.83447 1.45090 1.05663 1.81654 1.07917 1.15429 0.81974 0.78054 0.82361 1.90898 1.55239 1.59105 1.42403 1.47712 1.09233 1.76346 1.03123 1.22059 0.94404 0.99708 0.86047 1.22952 0.95018 1.02207 0.95622 1.20250 0.94142 0.77668 0.90056 1.86107 1.55240 1.21863 1.73503 1.21103 1.11822 1.09645 1.16391 0.90034 1.25120 0.94248 0.98472 0.95256 1.69973 1.19383 1.39753 1.23067 0.85632 0.80528 0.81321 0.73744 1.22093 1.25826 1.19614 1.22995 0.79108 1.01704 0.97613 1.21169 0.93777 0.98176 0.99329 1.21287 0.93787 0.97780 0.95032 0.91958 0.92004 0.90419 0.76287 0.85524 0.84874 0.90552 0.90519 0.76971 0.92718 0.92504 0.90179 0.89602 0.78056 0.92400 0.91178 0.91178 0.84763 0.84398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.41 10.70 59.85 0.64 1.05 16 2 N -0.73 -4.35 5.66 -68.04 -0.39 -4.73 16 3 C 0.56 5.22 7.77 -12.33 -0.10 5.12 16 4 O -0.54 -6.97 16.35 5.32 0.09 -6.88 16 5 C -0.13 -1.12 5.87 -104.97 -0.62 -1.73 16 6 C -0.09 -0.56 9.54 -39.18 -0.37 -0.94 16 7 C -0.11 -0.76 9.68 -39.64 -0.38 -1.14 16 8 C -0.08 -0.63 5.25 -104.53 -0.55 -1.18 16 9 C 0.18 1.83 5.79 -5.19 -0.03 1.80 16 10 N -0.75 -9.37 5.51 -66.41 -0.37 -9.74 16 11 C 0.72 12.40 8.49 -86.92 -0.74 11.66 16 12 O -0.60 -12.39 16.60 5.29 0.09 -12.30 16 13 N -0.63 -11.04 3.33 -176.24 -0.59 -11.62 16 14 C 0.10 1.56 6.15 -3.06 -0.02 1.55 16 15 C -0.12 -2.24 5.90 -24.89 -0.15 -2.39 16 16 C 0.22 4.70 0.70 -89.63 -0.06 4.63 16 17 O -0.56 -11.87 8.52 -35.23 -0.30 -12.17 16 18 C -0.55 -14.28 8.89 -34.44 -0.31 -14.59 16 19 H 0.08 2.30 8.00 -52.49 -0.42 1.88 16 20 C 0.07 2.02 5.46 -17.82 -0.10 1.92 16 21 N -0.89 -25.87 13.96 55.43 0.77 -25.10 16 22 Si 0.95 22.90 24.93 -169.99 -4.24 18.66 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 24 H -0.33 -8.10 7.11 56.52 0.40 -7.70 16 25 H -0.27 -6.31 5.42 56.52 0.31 -6.00 16 26 C 0.11 2.16 6.07 -2.54 -0.02 2.14 16 27 C -0.11 -0.86 9.68 -39.64 -0.38 -1.24 16 28 C -0.06 -0.52 9.60 -39.19 -0.38 -0.90 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.08 0.14 8.14 -51.93 -0.42 -0.28 16 32 H 0.40 1.25 6.86 -40.82 -0.28 0.97 16 33 H 0.13 0.43 6.41 -52.49 -0.34 0.09 16 34 H 0.13 0.80 8.06 -52.48 -0.42 0.38 16 35 H 0.08 0.81 8.08 -51.93 -0.42 0.39 16 36 H 0.08 0.82 8.08 -51.93 -0.42 0.40 16 37 H 0.40 4.32 7.45 -40.82 -0.30 4.02 16 38 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.08 1.54 6.65 -51.93 -0.35 1.19 16 41 H 0.09 1.58 8.03 -51.93 -0.42 1.16 16 42 H 0.37 7.10 8.98 45.56 0.41 7.51 16 43 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 44 H 0.07 1.43 8.02 -51.93 -0.42 1.02 16 45 H 0.07 1.43 7.99 -51.93 -0.41 1.02 16 46 H 0.13 0.95 8.06 -52.48 -0.42 0.52 16 47 H 0.14 1.20 7.65 -52.49 -0.40 0.80 16 LS Contribution 387.37 15.07 5.84 5.84 Total: -1.00 -35.32 387.37 -8.60 -43.92 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: -5.95 Total: 8.34 kcal Atomic # 6 Polarization: 9.34 SS G_CDS: -3.55 Total: 5.78 kcal Atomic # 7 Polarization: -50.63 SS G_CDS: -0.56 Total: -51.19 kcal Atomic # 8 Polarization: -31.23 SS G_CDS: -0.13 Total: -31.35 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -4.24 Total: 18.66 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -35.32 -8.60 -43.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000825697235.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.182 kcal (2) G-P(sol) polarization free energy of solvation -35.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds