Wall clock time and date at job start Wed Apr 1 2020 04:47:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34775 * 119.99667 * 2 1 4 4 O 1.21550 * 120.00328 * 0.02562 * 3 2 1 5 5 C 1.47850 * 120.00003 * 180.27806 * 3 2 1 6 6 C 1.39575 * 120.13951 * 359.45098 * 5 3 2 7 7 C 1.37962 * 119.85231 * 179.74629 * 6 5 3 8 8 C 1.38365 * 120.13983 * 0.53155 * 7 6 5 9 9 C 1.50707 * 119.85008 * 179.76761 * 8 7 6 10 10 N 1.46500 * 109.46638 * 269.97853 * 9 8 7 11 11 C 1.34775 * 119.99582 * 180.02562 * 10 9 8 12 12 O 1.21585 * 120.00599 * 359.97438 * 11 10 9 13 13 N 1.34778 * 120.00100 * 180.02562 * 11 10 9 14 14 C 1.47021 * 125.64573 * 359.68226 * 13 11 10 15 15 C 1.54338 * 107.26900 * 178.85585 * 14 13 11 16 16 C 1.55163 * 103.01512 * 338.14327 * 15 14 13 17 17 O 1.42905 * 111.00189 * 277.23061 * 16 15 14 18 18 C 1.50699 * 111.03362 * 153.39723 * 16 15 14 19 19 H 1.07998 * 119.99739 * 272.60275 * 18 16 15 20 20 C 1.37879 * 120.00061 * 92.61456 * 18 16 15 21 21 N 1.31519 * 119.99878 * 173.52042 * 20 18 16 22 22 Si 1.86797 * 120.00170 * 353.50824 * 20 18 16 23 23 H 1.48498 * 109.46952 * 87.32610 * 22 20 18 24 24 H 1.48497 * 109.47403 * 207.32901 * 22 20 18 25 25 H 1.48506 * 109.47273 * 327.33296 * 22 20 18 26 26 C 1.47425 * 125.65205 * 179.97438 * 13 11 10 27 27 C 1.38350 * 120.29419 * 359.74286 * 8 7 6 28 28 C 1.37957 * 120.14855 * 359.97438 * 27 8 7 29 29 H 1.09004 * 109.46941 * 299.99173 * 1 2 3 30 30 H 1.08999 * 109.47551 * 59.99293 * 1 2 3 31 31 H 1.08997 * 109.46752 * 179.97438 * 1 2 3 32 32 H 0.97000 * 119.99894 * 180.02562 * 2 1 3 33 33 H 1.08002 * 120.07560 * 359.97438 * 6 5 3 34 34 H 1.08003 * 119.93211 * 180.27692 * 7 6 5 35 35 H 1.09000 * 109.47031 * 29.97696 * 9 8 7 36 36 H 1.08993 * 109.46728 * 149.97728 * 9 8 7 37 37 H 0.97002 * 120.00716 * 359.97438 * 10 9 8 38 38 H 1.09004 * 109.88756 * 298.39901 * 14 13 11 39 39 H 1.08998 * 109.88388 * 59.56376 * 14 13 11 40 40 H 1.09000 * 110.85487 * 219.67917 * 15 14 13 41 41 H 1.08992 * 110.51845 * 96.44886 * 15 14 13 42 42 H 0.96703 * 113.99979 * 168.40255 * 17 16 15 43 43 H 0.97000 * 119.99518 * 179.97438 * 21 20 18 44 44 H 1.08997 * 110.36319 * 322.92614 * 26 13 11 45 45 H 1.09003 * 110.36726 * 85.13959 * 26 13 11 46 46 H 1.08006 * 119.92833 * 179.97438 * 27 8 7 47 47 H 1.08001 * 120.07847 * 180.02562 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5311 2.2199 0.0005 5 6 3.6173 1.1673 -0.0062 6 6 4.3182 -0.0397 -0.0005 7 6 5.6978 -0.0327 -0.0117 8 6 6.3865 1.1674 -0.0174 9 6 7.8935 1.1674 -0.0242 10 7 8.3880 1.1708 1.3548 11 6 9.7142 1.1719 1.5950 12 8 10.5002 1.1696 0.6674 13 7 10.1693 1.1746 2.8637 14 6 9.3340 1.1831 4.0735 15 6 10.2861 1.1537 5.2878 16 6 11.5937 0.5676 4.6926 17 8 11.5380 -0.8594 4.6404 18 6 12.7977 1.0302 5.4719 19 1 13.2814 1.9613 5.2160 20 6 13.2818 0.2648 6.5115 21 7 14.4043 0.6011 7.1086 22 14 12.3432 -1.2499 7.0721 23 1 12.7673 -2.4219 6.2648 24 1 12.6294 -1.5070 8.5063 25 1 10.8865 -1.0250 6.8905 26 6 11.5870 1.1755 3.2680 27 6 5.6977 2.3673 -0.0173 28 6 4.3182 2.3743 -0.0120 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.9500 -0.8400 -0.0004 33 1 3.7818 -0.9770 0.0089 34 1 6.2414 -0.9659 -0.0118 35 1 8.2545 0.2761 -0.5375 36 1 8.2544 2.0560 -0.5419 37 1 7.7611 1.1730 2.0950 38 1 8.7264 2.0877 4.0983 39 1 8.6919 0.3024 4.0869 40 1 9.8950 0.5056 6.0720 41 1 10.4531 2.1619 5.6668 42 1 12.2466 -1.2618 4.1197 43 1 14.7446 0.0628 7.8402 44 1 12.1754 0.5582 2.5893 45 1 11.9755 2.1938 3.2867 46 1 6.2413 3.3006 -0.0213 47 1 3.7817 3.3116 -0.0124 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000825697235.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:44 Heat of formation + Delta-G solvation = -105.363981 kcal Electronic energy + Delta-G solvation = -29621.446878 eV Core-core repulsion = 25382.198078 eV Total energy + Delta-G solvation = -4239.248800 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.49337 -41.16626 -39.77881 -39.17327 -36.32885 -35.98638 -35.75584 -34.43724 -32.86940 -32.02392 -31.65281 -29.95704 -28.67844 -27.29928 -26.23031 -24.10330 -23.66277 -23.20293 -21.56480 -21.41346 -21.10991 -19.64701 -19.31454 -18.98846 -17.42033 -17.35336 -17.04058 -16.90919 -16.64597 -16.31085 -16.23885 -15.97771 -15.88683 -15.40973 -15.21774 -15.07747 -14.58946 -14.52611 -14.28916 -14.10031 -13.99368 -13.80338 -13.68110 -13.38881 -13.22996 -13.17749 -13.11102 -12.73021 -12.59955 -12.28833 -12.19706 -12.06659 -11.93488 -11.40909 -11.22254 -11.17543 -10.62189 -10.40201 -10.31123 -10.24611 -10.00852 -9.89269 -9.41677 -8.31991 -6.45758 -0.34396 0.35676 1.50947 1.53019 1.55474 1.76392 1.87565 2.12435 2.17557 2.47616 2.77138 2.99301 3.14525 3.48740 3.51365 3.74502 3.78350 3.86188 3.95799 4.09627 4.23275 4.28549 4.33704 4.44376 4.45552 4.60679 4.60976 4.62112 4.65476 4.79148 4.85624 4.93851 4.97857 5.01633 5.16382 5.20404 5.23057 5.30341 5.33898 5.39602 5.42052 5.50209 5.55597 5.81296 6.06854 6.08974 6.45082 6.60237 6.91226 7.00198 7.12396 7.32137 7.52546 8.80872 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018608 B = 0.001998 C = 0.001896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.336014 B =14010.224095 C =14765.729373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.717 5.717 3 C 0.552 3.448 4 O -0.583 6.583 5 C -0.142 4.142 6 C -0.076 4.076 7 C -0.104 4.104 8 C -0.078 4.078 9 C 0.179 3.821 10 N -0.726 5.726 11 C 0.717 3.283 12 O -0.637 6.637 13 N -0.630 5.630 14 C 0.108 3.892 15 C -0.119 4.119 16 C 0.217 3.783 17 O -0.558 6.558 18 C -0.548 4.548 19 H 0.044 0.956 20 C 0.024 3.976 21 N -0.937 5.937 22 Si 1.012 2.988 23 H -0.287 1.287 24 H -0.339 1.339 25 H -0.253 1.253 26 C 0.118 3.882 27 C -0.106 4.106 28 C -0.074 4.074 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.114 0.886 32 H 0.418 0.582 33 H 0.162 0.838 34 H 0.151 0.849 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.408 0.592 38 H 0.087 0.913 39 H 0.079 0.921 40 H 0.081 0.919 41 H 0.083 0.917 42 H 0.379 0.621 43 H 0.267 0.733 44 H 0.060 0.940 45 H 0.057 0.943 46 H 0.140 0.860 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.828 -5.127 -14.667 31.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.369 5.369 3 C 0.340 3.660 4 O -0.464 6.464 5 C -0.146 4.146 6 C -0.094 4.094 7 C -0.122 4.122 8 C -0.079 4.079 9 C 0.056 3.944 10 N -0.383 5.383 11 C 0.419 3.581 12 O -0.519 6.519 13 N -0.367 5.367 14 C -0.014 4.014 15 C -0.157 4.157 16 C 0.176 3.824 17 O -0.367 6.367 18 C -0.586 4.586 19 H 0.062 0.938 20 C -0.176 4.176 21 N -0.575 5.575 22 Si 0.846 3.154 23 H -0.214 1.214 24 H -0.271 1.271 25 H -0.178 1.178 26 C -0.006 4.006 27 C -0.125 4.125 28 C -0.093 4.093 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.132 0.868 32 H 0.256 0.744 33 H 0.179 0.821 34 H 0.168 0.832 35 H 0.095 0.905 36 H 0.089 0.911 37 H 0.244 0.756 38 H 0.105 0.895 39 H 0.097 0.903 40 H 0.100 0.900 41 H 0.102 0.898 42 H 0.229 0.771 43 H 0.075 0.925 44 H 0.078 0.922 45 H 0.075 0.925 46 H 0.158 0.842 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -28.176 -4.327 -14.965 32.196 hybrid contribution 0.853 -0.551 0.492 1.129 sum -27.323 -4.878 -14.473 31.302 Atomic orbital electron populations 1.21730 0.78247 1.04560 1.01621 1.45677 1.08653 1.08408 1.74187 1.18617 0.87850 0.83954 0.75586 1.90762 1.70844 1.32931 1.51876 1.20012 0.92118 0.95435 1.06996 1.21541 0.94257 0.97320 0.96319 1.21311 0.94118 0.98269 0.98508 1.20032 0.94116 0.94104 0.99614 1.20083 0.89067 1.03261 0.82031 1.44966 1.03985 1.79967 1.09381 1.15566 0.83093 0.77857 0.81539 1.90874 1.56705 1.60859 1.43511 1.47619 1.08290 1.76693 1.04089 1.22124 0.93539 1.02417 0.83313 1.22859 0.94014 1.01794 0.97020 1.20117 0.93830 0.77960 0.90459 1.86061 1.55551 1.21362 1.73726 1.21347 1.12943 1.08021 1.16301 0.93816 1.25895 0.94824 1.01362 0.95540 1.70098 1.21453 1.41572 1.24341 0.84653 0.80106 0.78151 0.72540 1.21376 1.27148 1.17832 1.22613 0.80909 1.00551 0.96560 1.21193 0.93514 0.98567 0.99219 1.21303 0.94084 0.97935 0.95929 0.93053 0.92956 0.86767 0.74398 0.82104 0.83179 0.90529 0.91069 0.75570 0.89498 0.90278 0.90047 0.89814 0.77121 0.92471 0.92198 0.92513 0.84243 0.85345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.62 10.70 127.77 1.37 1.98 16 2 N -0.72 -6.73 5.66 -487.47 -2.76 -9.49 16 3 C 0.55 9.61 7.77 86.79 0.67 10.29 16 4 O -0.58 -15.29 16.35 -3.87 -0.06 -15.35 16 5 C -0.14 -2.09 5.87 -20.09 -0.12 -2.21 16 6 C -0.08 -0.69 9.54 22.53 0.21 -0.47 16 7 C -0.10 -1.10 9.68 22.23 0.22 -0.88 16 8 C -0.08 -1.08 5.25 -19.81 -0.10 -1.19 16 9 C 0.18 3.29 5.79 85.64 0.50 3.79 16 10 N -0.73 -16.14 5.51 -482.30 -2.66 -18.80 16 11 C 0.72 23.27 8.49 179.05 1.52 24.79 16 12 O -0.64 -25.89 16.60 -3.98 -0.07 -25.96 16 13 N -0.63 -20.78 3.33 -829.78 -2.76 -23.54 16 14 C 0.11 2.94 6.15 86.73 0.53 3.48 16 15 C -0.12 -4.15 5.90 31.79 0.19 -3.97 16 16 C 0.22 9.06 0.70 -10.15 -0.01 9.05 16 17 O -0.56 -22.41 8.52 -148.98 -1.27 -23.68 16 18 C -0.55 -28.82 8.89 25.60 0.23 -28.59 16 19 H 0.04 2.57 8.00 -2.91 -0.02 2.55 16 20 C 0.02 1.30 5.46 84.65 0.46 1.76 16 21 N -0.94 -56.17 13.96 21.45 0.30 -55.87 16 22 Si 1.01 46.63 24.93 68.60 1.71 48.34 16 23 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 24 H -0.34 -16.22 7.11 99.48 0.71 -15.51 16 25 H -0.25 -10.86 5.42 99.48 0.54 -10.32 16 26 C 0.12 4.63 6.07 86.85 0.53 5.16 16 27 C -0.11 -1.54 9.68 22.23 0.22 -1.33 16 28 C -0.07 -1.20 9.60 22.53 0.22 -0.99 16 29 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.11 0.02 8.14 -2.39 -0.02 0.00 16 32 H 0.42 1.01 6.86 -92.71 -0.64 0.38 16 33 H 0.16 0.27 6.41 -2.91 -0.02 0.25 16 34 H 0.15 1.13 8.06 -2.91 -0.02 1.10 16 35 H 0.08 1.45 8.08 -2.39 -0.02 1.43 16 36 H 0.07 1.42 8.08 -2.39 -0.02 1.40 16 37 H 0.41 7.28 7.45 -92.71 -0.69 6.59 16 38 H 0.09 1.87 8.14 -2.38 -0.02 1.85 16 39 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.08 2.85 6.65 -2.39 -0.02 2.83 16 41 H 0.08 2.94 8.03 -2.39 -0.02 2.92 16 42 H 0.38 13.85 8.98 -74.06 -0.67 13.18 16 43 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 44 H 0.06 2.45 8.02 -2.39 -0.02 2.44 16 45 H 0.06 2.36 7.99 -2.39 -0.02 2.34 16 46 H 0.14 1.79 8.06 -2.91 -0.02 1.77 16 47 H 0.13 2.29 7.65 -2.91 -0.02 2.27 16 Total: -1.00 -79.03 387.37 -2.07 -81.10 By element: Atomic # 1 Polarization: 23.72 SS G_CDS: -1.13 Total: 22.59 kcal Atomic # 6 Polarization: 14.04 SS G_CDS: 6.63 Total: 20.67 kcal Atomic # 7 Polarization: -99.83 SS G_CDS: -7.88 Total: -107.71 kcal Atomic # 8 Polarization: -63.59 SS G_CDS: -1.40 Total: -64.99 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 1.71 Total: 48.34 kcal Total: -79.03 -2.07 -81.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000825697235.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.263 kcal (2) G-P(sol) polarization free energy of solvation -79.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds