Wall clock time and date at job start Wed Apr 1 2020 04:15:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46502 * 119.99659 * 2 1 4 4 C 1.52999 * 109.47083 * 269.99828 * 3 2 1 5 5 O 1.42897 * 110.26879 * 302.07698 * 4 3 2 6 6 C 1.54340 * 110.30368 * 180.02562 * 4 3 2 7 7 C 1.54346 * 102.39589 * 267.42084 * 6 4 3 8 8 C 1.51374 * 105.17032 * 333.66122 * 7 6 4 9 9 C 1.38492 * 130.39369 * 197.17944 * 8 7 6 10 10 C 1.38106 * 120.21577 * 179.97438 * 9 8 7 11 11 C 1.38254 * 119.93398 * 0.02562 * 10 9 8 12 12 C 1.38103 * 119.93614 * 359.97438 * 11 10 9 13 13 C 1.38218 * 109.75861 * 17.44763 * 8 7 6 14 14 C 1.34773 * 120.00253 * 179.97438 * 2 1 3 15 15 O 1.21586 * 120.00199 * 180.02562 * 14 2 1 16 16 N 1.34775 * 120.00033 * 0.02562 * 14 2 1 17 17 C 1.46497 * 120.00172 * 179.97438 * 16 14 2 18 18 C 1.50700 * 109.47184 * 180.02562 * 17 16 14 19 19 O 1.21288 * 120.00119 * 359.97438 * 18 17 16 20 20 N 1.34778 * 120.00057 * 180.02562 * 18 17 16 21 21 C 1.37098 * 120.00234 * 179.97438 * 20 18 17 22 22 H 1.08004 * 119.99604 * 359.97438 * 21 20 18 23 23 C 1.38953 * 120.00285 * 179.97438 * 21 20 18 24 24 N 1.31411 * 119.99782 * 0.02562 * 23 21 20 25 25 Si 1.86793 * 120.00042 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.46958 * 90.00296 * 25 23 21 27 27 H 1.48496 * 109.47376 * 209.99827 * 25 23 21 28 28 H 1.48498 * 109.47549 * 330.00354 * 25 23 21 29 29 H 1.08998 * 109.47279 * 90.00295 * 1 2 3 30 30 H 1.09003 * 109.47016 * 209.99779 * 1 2 3 31 31 H 1.08999 * 109.47804 * 329.99792 * 1 2 3 32 32 H 1.09005 * 109.46871 * 149.99908 * 3 2 1 33 33 H 1.08998 * 109.47194 * 30.00150 * 3 2 1 34 34 H 0.96705 * 114.00445 * 57.92811 * 5 4 3 35 35 H 1.08998 * 110.82511 * 149.19486 * 6 4 3 36 36 H 1.09002 * 110.82656 * 25.64527 * 6 4 3 37 37 H 1.08998 * 110.30893 * 214.73848 * 7 6 4 38 38 H 1.09005 * 110.38300 * 92.61938 * 7 6 4 39 39 H 1.08000 * 119.89406 * 0.02562 * 9 8 7 40 40 H 1.08004 * 120.03466 * 179.97438 * 10 9 8 41 41 H 1.07997 * 120.02985 * 180.02562 * 11 10 9 42 42 H 1.08002 * 119.88983 * 180.02562 * 12 11 10 43 43 H 0.97003 * 120.00105 * 359.97438 * 16 14 2 44 44 H 1.09005 * 109.47462 * 300.00013 * 17 16 14 45 45 H 1.09004 * 109.47231 * 60.00209 * 17 16 14 46 46 H 0.97003 * 120.00271 * 359.97438 * 20 18 17 47 47 H 0.96997 * 119.99776 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4524 1.7104 -1.4425 5 8 3.1831 0.7042 -2.1465 6 6 3.2245 3.0466 -1.4649 7 6 2.0858 4.0861 -1.5374 8 6 0.9311 3.3634 -2.1975 9 6 -0.2133 3.8607 -2.7983 10 6 -1.1435 2.9975 -3.3431 11 6 -0.9328 1.6322 -3.2885 12 6 0.2078 1.1343 -2.6899 13 6 1.1389 1.9982 -2.1377 14 6 2.1389 -1.1671 0.0005 15 8 3.3547 -1.1671 0.0010 16 7 1.4651 -2.3344 0.0005 17 6 2.1976 -3.6030 0.0005 18 6 1.2183 -4.7485 -0.0001 19 8 0.0258 -4.5270 -0.0001 20 7 1.6676 -6.0192 0.0003 21 6 0.7768 -7.0613 0.0003 22 1 -0.2851 -6.8640 0.0003 23 6 1.2400 -8.3714 0.0001 24 7 2.5319 -8.6114 0.0006 25 14 0.0261 -9.7912 0.0008 26 1 -0.2961 -10.1676 -1.3992 27 1 0.6264 -10.9553 0.7006 28 1 -1.2169 -9.3795 0.7013 29 1 -0.3634 -0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3635 0.8899 0.5138 32 1 3.1498 1.1385 0.5139 33 1 1.6083 2.0284 0.5138 34 1 2.7462 -0.1583 -2.1656 35 1 3.8636 3.1101 -2.3456 36 1 3.8069 3.1731 -0.5523 37 1 2.3916 4.9407 -2.1408 38 1 1.8050 4.4120 -0.5358 39 1 -0.3784 4.9272 -2.8416 40 1 -2.0352 3.3886 -3.8105 41 1 -1.6590 0.9558 -3.7144 42 1 0.3719 0.0677 -2.6481 43 1 0.4950 -2.3344 0.0005 44 1 2.8243 -3.6608 -0.8895 45 1 2.8242 -3.6608 0.8905 46 1 2.6213 -6.1965 0.0006 47 1 2.8553 -9.5259 0.0001 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000827072100.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:00 Heat of formation + Delta-G solvation = -72.109006 kcal Electronic energy + Delta-G solvation = -30929.171849 eV Core-core repulsion = 26691.365093 eV Total energy + Delta-G solvation = -4237.806756 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.16570 -39.80577 -38.28080 -37.23572 -35.29190 -34.73885 -34.45311 -33.66448 -31.40001 -31.24076 -29.66627 -28.87645 -27.57970 -26.41646 -24.95088 -23.95920 -22.97478 -21.32177 -20.56090 -19.78169 -19.62240 -18.35054 -17.81927 -17.59003 -16.65397 -16.41404 -15.82728 -15.63368 -15.50618 -15.10283 -14.81216 -14.66461 -14.35186 -14.12446 -13.92930 -13.83423 -13.51626 -13.48751 -13.32743 -12.87013 -12.80489 -12.50920 -12.30020 -12.11607 -12.04982 -11.93712 -11.80562 -11.63930 -11.59800 -11.16901 -11.13363 -11.04180 -10.46915 -10.32952 -10.22389 -9.98804 -9.64543 -9.20385 -8.89254 -8.82915 -8.64075 -8.39761 -8.10939 -6.52213 -3.94297 1.08044 1.13551 2.62559 3.10832 3.21490 3.26542 3.27712 3.47247 3.73776 3.96475 4.00850 4.10003 4.17329 4.37428 4.58765 4.76448 4.77890 4.80553 4.86785 4.91636 5.05293 5.12124 5.14921 5.16504 5.27985 5.35019 5.41339 5.49873 5.55103 5.63445 5.66907 5.75333 5.80968 5.87400 5.91920 5.98960 6.06743 6.20368 6.27487 6.33375 6.41548 6.71260 6.73567 6.94011 7.45142 7.57626 7.91399 8.08923 8.44064 8.71518 9.03736 9.38588 9.86263 10.64654 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.019836 B = 0.002291 C = 0.002146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.215743 B =12217.505629 C =13045.329776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.634 5.634 3 C 0.118 3.882 4 C 0.155 3.845 5 O -0.538 6.538 6 C -0.103 4.103 7 C -0.082 4.082 8 C -0.091 4.091 9 C -0.111 4.111 10 C -0.115 4.115 11 C -0.122 4.122 12 C -0.091 4.091 13 C -0.117 4.117 14 C 0.697 3.303 15 O -0.582 6.582 16 N -0.723 5.723 17 C 0.127 3.873 18 C 0.428 3.572 19 O -0.599 6.599 20 N -0.548 5.548 21 C -0.305 4.305 22 H 0.105 0.895 23 C 0.026 3.974 24 N -0.894 5.894 25 Si 0.933 3.067 26 H -0.277 1.277 27 H -0.282 1.282 28 H -0.269 1.269 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.097 0.903 33 H 0.083 0.917 34 H 0.375 0.625 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.119 0.881 40 H 0.123 0.877 41 H 0.125 0.875 42 H 0.120 0.880 43 H 0.407 0.593 44 H 0.083 0.917 45 H 0.082 0.918 46 H 0.396 0.604 47 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.181 25.384 -3.103 25.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.372 5.372 3 C -0.006 4.006 4 C 0.113 3.887 5 O -0.344 6.344 6 C -0.141 4.141 7 C -0.119 4.119 8 C -0.091 4.091 9 C -0.129 4.129 10 C -0.133 4.133 11 C -0.140 4.140 12 C -0.109 4.109 13 C -0.117 4.117 14 C 0.398 3.602 15 O -0.460 6.460 16 N -0.382 5.382 17 C -0.002 4.002 18 C 0.214 3.786 19 O -0.486 6.486 20 N -0.183 5.183 21 C -0.434 4.434 22 H 0.123 0.877 23 C -0.177 4.177 24 N -0.534 5.534 25 Si 0.760 3.240 26 H -0.203 1.203 27 H -0.208 1.208 28 H -0.193 1.193 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.115 0.885 33 H 0.101 0.899 34 H 0.224 0.776 35 H 0.106 0.894 36 H 0.105 0.895 37 H 0.098 0.902 38 H 0.102 0.898 39 H 0.137 0.863 40 H 0.141 0.859 41 H 0.143 0.857 42 H 0.138 0.862 43 H 0.246 0.754 44 H 0.101 0.899 45 H 0.100 0.900 46 H 0.230 0.770 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.554 25.763 -3.160 26.081 hybrid contribution -1.052 -1.435 0.046 1.780 sum -3.606 24.328 -3.114 24.790 Atomic orbital electron populations 1.22106 0.79654 1.03102 1.02758 1.46920 1.06415 1.04651 1.79224 1.21996 0.98536 0.84297 0.95817 1.21204 0.87295 0.89518 0.90717 1.86542 1.49276 1.22257 1.76325 1.22265 0.97178 0.90581 1.04070 1.21075 0.92160 0.97988 1.00649 1.20489 0.95802 0.94474 0.98384 1.20595 0.93574 0.99654 0.99097 1.21053 0.99074 0.93444 0.99754 1.21079 0.97493 0.95600 0.99878 1.20618 0.93596 0.99437 0.97249 1.21102 0.96908 0.94291 0.99437 1.15894 0.85369 0.80360 0.78532 1.90965 1.11058 1.86152 1.57817 1.44974 1.11053 1.03643 1.78556 1.20810 0.94010 0.82133 1.03229 1.19750 0.89122 0.84160 0.85568 1.90484 1.16519 1.84113 1.57476 1.41790 1.10023 1.03939 1.62560 1.19719 0.91398 0.84027 1.48303 0.87703 1.25328 0.96686 0.98916 0.96793 1.69614 1.12541 1.22008 1.49238 0.85814 0.79925 0.79805 0.78491 1.20260 1.20793 1.19339 0.91571 0.90980 0.91105 0.88458 0.89878 0.77592 0.89417 0.89530 0.90209 0.89838 0.86315 0.85918 0.85706 0.86217 0.75372 0.89902 0.90001 0.76998 0.91569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.67 9.21 59.84 0.55 1.22 16 2 N -0.63 -7.68 2.51 -187.35 -0.47 -8.15 16 3 C 0.12 1.27 4.65 -4.04 -0.02 1.25 16 4 C 0.16 1.71 1.08 -90.74 -0.10 1.61 16 5 O -0.54 -7.71 12.47 -42.16 -0.53 -8.24 16 6 C -0.10 -0.90 6.32 -25.32 -0.16 -1.06 16 7 C -0.08 -0.58 6.76 -26.85 -0.18 -0.76 16 8 C -0.09 -0.83 6.14 -104.20 -0.64 -1.47 16 9 C -0.11 -0.92 10.04 -39.54 -0.40 -1.32 16 10 C -0.12 -0.95 10.05 -39.62 -0.40 -1.35 16 11 C -0.12 -1.12 10.05 -39.63 -0.40 -1.52 16 12 C -0.09 -0.95 7.15 -39.54 -0.28 -1.23 16 13 C -0.12 -1.22 4.56 -104.20 -0.47 -1.70 16 14 C 0.70 10.96 6.89 -86.92 -0.60 10.36 16 15 O -0.58 -10.90 14.99 -1.64 -0.02 -10.93 16 16 N -0.72 -11.89 5.39 -66.41 -0.36 -12.25 16 17 C 0.13 2.32 6.15 -5.20 -0.03 2.28 16 18 C 0.43 9.69 7.85 -10.98 -0.09 9.60 16 19 O -0.60 -15.04 15.24 5.55 0.08 -14.96 16 20 N -0.55 -13.49 5.29 -10.96 -0.06 -13.54 16 21 C -0.31 -8.22 9.68 -14.93 -0.14 -8.37 16 22 H 0.11 2.94 7.16 -52.48 -0.38 2.57 16 23 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 24 N -0.89 -23.80 13.05 55.50 0.72 -23.07 16 25 Si 0.93 20.44 29.55 -169.99 -5.02 15.41 16 26 H -0.28 -6.00 7.11 56.52 0.40 -5.59 16 27 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 28 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 29 H 0.07 0.64 4.37 -51.93 -0.23 0.41 16 30 H 0.07 0.76 6.36 -51.93 -0.33 0.43 16 31 H 0.07 0.59 7.89 -51.93 -0.41 0.18 16 32 H 0.10 1.19 7.42 -51.93 -0.39 0.81 16 33 H 0.08 0.71 7.89 -51.93 -0.41 0.30 16 34 H 0.38 5.53 6.93 45.56 0.32 5.85 16 35 H 0.09 0.84 8.11 -51.93 -0.42 0.41 16 36 H 0.09 0.63 7.90 -51.93 -0.41 0.22 16 37 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 40 H 0.12 0.75 8.06 -52.48 -0.42 0.33 16 41 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 42 H 0.12 1.30 7.10 -52.49 -0.37 0.93 16 43 H 0.41 6.59 5.17 -40.82 -0.21 6.38 16 44 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 45 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 46 H 0.40 9.40 7.90 -40.82 -0.32 9.08 16 47 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 381.14 15.07 5.74 5.74 Total: -1.00 -32.10 381.14 -9.02 -41.12 By element: Atomic # 1 Polarization: 26.39 SS G_CDS: -5.65 Total: 20.73 kcal Atomic # 6 Polarization: 11.59 SS G_CDS: -3.45 Total: 8.14 kcal Atomic # 7 Polarization: -56.85 SS G_CDS: -0.16 Total: -57.02 kcal Atomic # 8 Polarization: -33.66 SS G_CDS: -0.47 Total: -34.13 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.10 -9.02 -41.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827072100.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.993 kcal (2) G-P(sol) polarization free energy of solvation -32.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds