Wall clock time and date at job start Wed Apr 1 2020 04:14:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46502 * 119.99659 * 2 1 4 4 C 1.52999 * 109.47083 * 269.99828 * 3 2 1 5 5 O 1.42897 * 110.26879 * 302.07698 * 4 3 2 6 6 C 1.54340 * 110.30368 * 180.02562 * 4 3 2 7 7 C 1.54346 * 102.39589 * 267.42084 * 6 4 3 8 8 C 1.51374 * 105.17032 * 333.66122 * 7 6 4 9 9 C 1.38492 * 130.39369 * 197.17944 * 8 7 6 10 10 C 1.38106 * 120.21577 * 179.97438 * 9 8 7 11 11 C 1.38254 * 119.93398 * 0.02562 * 10 9 8 12 12 C 1.38103 * 119.93614 * 359.97438 * 11 10 9 13 13 C 1.38218 * 109.75861 * 17.44763 * 8 7 6 14 14 C 1.34773 * 120.00253 * 179.97438 * 2 1 3 15 15 O 1.21586 * 120.00199 * 180.02562 * 14 2 1 16 16 N 1.34775 * 120.00033 * 0.02562 * 14 2 1 17 17 C 1.46497 * 120.00172 * 179.97438 * 16 14 2 18 18 C 1.50700 * 109.47184 * 180.02562 * 17 16 14 19 19 O 1.21288 * 120.00119 * 359.97438 * 18 17 16 20 20 N 1.34778 * 120.00057 * 180.02562 * 18 17 16 21 21 C 1.37098 * 120.00234 * 179.97438 * 20 18 17 22 22 H 1.08004 * 119.99604 * 359.97438 * 21 20 18 23 23 C 1.38953 * 120.00285 * 179.97438 * 21 20 18 24 24 N 1.31411 * 119.99782 * 0.02562 * 23 21 20 25 25 Si 1.86793 * 120.00042 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.46958 * 90.00296 * 25 23 21 27 27 H 1.48496 * 109.47376 * 209.99827 * 25 23 21 28 28 H 1.48498 * 109.47549 * 330.00354 * 25 23 21 29 29 H 1.08998 * 109.47279 * 90.00295 * 1 2 3 30 30 H 1.09003 * 109.47016 * 209.99779 * 1 2 3 31 31 H 1.08999 * 109.47804 * 329.99792 * 1 2 3 32 32 H 1.09005 * 109.46871 * 149.99908 * 3 2 1 33 33 H 1.08998 * 109.47194 * 30.00150 * 3 2 1 34 34 H 0.96705 * 114.00445 * 57.92811 * 5 4 3 35 35 H 1.08998 * 110.82511 * 149.19486 * 6 4 3 36 36 H 1.09002 * 110.82656 * 25.64527 * 6 4 3 37 37 H 1.08998 * 110.30893 * 214.73848 * 7 6 4 38 38 H 1.09005 * 110.38300 * 92.61938 * 7 6 4 39 39 H 1.08000 * 119.89406 * 0.02562 * 9 8 7 40 40 H 1.08004 * 120.03466 * 179.97438 * 10 9 8 41 41 H 1.07997 * 120.02985 * 180.02562 * 11 10 9 42 42 H 1.08002 * 119.88983 * 180.02562 * 12 11 10 43 43 H 0.97003 * 120.00105 * 359.97438 * 16 14 2 44 44 H 1.09005 * 109.47462 * 300.00013 * 17 16 14 45 45 H 1.09004 * 109.47231 * 60.00209 * 17 16 14 46 46 H 0.97003 * 120.00271 * 359.97438 * 20 18 17 47 47 H 0.96997 * 119.99776 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4524 1.7104 -1.4425 5 8 3.1831 0.7042 -2.1465 6 6 3.2245 3.0466 -1.4649 7 6 2.0858 4.0861 -1.5374 8 6 0.9311 3.3634 -2.1975 9 6 -0.2133 3.8607 -2.7983 10 6 -1.1435 2.9975 -3.3431 11 6 -0.9328 1.6322 -3.2885 12 6 0.2078 1.1343 -2.6899 13 6 1.1389 1.9982 -2.1377 14 6 2.1389 -1.1671 0.0005 15 8 3.3547 -1.1671 0.0010 16 7 1.4651 -2.3344 0.0005 17 6 2.1976 -3.6030 0.0005 18 6 1.2183 -4.7485 -0.0001 19 8 0.0258 -4.5270 -0.0001 20 7 1.6676 -6.0192 0.0003 21 6 0.7768 -7.0613 0.0003 22 1 -0.2851 -6.8640 0.0003 23 6 1.2400 -8.3714 0.0001 24 7 2.5319 -8.6114 0.0006 25 14 0.0261 -9.7912 0.0008 26 1 -0.2961 -10.1676 -1.3992 27 1 0.6264 -10.9553 0.7006 28 1 -1.2169 -9.3795 0.7013 29 1 -0.3634 -0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3635 0.8899 0.5138 32 1 3.1498 1.1385 0.5139 33 1 1.6083 2.0284 0.5138 34 1 2.7462 -0.1583 -2.1656 35 1 3.8636 3.1101 -2.3456 36 1 3.8069 3.1731 -0.5523 37 1 2.3916 4.9407 -2.1408 38 1 1.8050 4.4120 -0.5358 39 1 -0.3784 4.9272 -2.8416 40 1 -2.0352 3.3886 -3.8105 41 1 -1.6590 0.9558 -3.7144 42 1 0.3719 0.0677 -2.6481 43 1 0.4950 -2.3344 0.0005 44 1 2.8243 -3.6608 -0.8895 45 1 2.8242 -3.6608 0.8905 46 1 2.6213 -6.1965 0.0006 47 1 2.8553 -9.5259 0.0001 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000827072100.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:59 Heat of formation + Delta-G solvation = -94.562138 kcal Electronic energy + Delta-G solvation = -30930.145490 eV Core-core repulsion = 26691.365093 eV Total energy + Delta-G solvation = -4238.780397 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.05876 -40.95455 -40.01619 -38.13282 -36.35822 -36.24838 -35.55456 -35.25972 -33.37237 -31.97170 -30.51409 -29.74121 -28.91314 -27.40635 -26.46388 -25.17140 -23.64803 -21.99029 -21.54218 -21.33888 -20.88746 -20.11504 -19.27720 -18.51021 -17.70976 -17.39104 -17.35398 -16.67862 -16.59240 -16.37965 -16.24069 -15.93040 -15.61436 -15.30273 -15.10328 -15.02330 -14.66970 -14.36836 -14.25884 -13.99382 -13.63325 -13.62300 -13.54694 -13.52765 -13.25701 -13.00943 -12.90459 -12.78503 -12.46938 -12.45675 -12.29939 -12.12948 -11.85113 -11.83244 -11.57062 -11.33008 -11.08234 -10.55877 -10.30508 -10.09932 -9.90807 -9.54508 -9.31923 -8.51065 -6.01261 0.39786 0.46107 1.36227 1.41512 1.48020 1.56528 1.89089 2.04354 2.27553 2.78644 2.81717 3.16208 3.16316 3.18562 3.42912 3.63807 3.81429 4.03315 4.08924 4.13016 4.19358 4.22205 4.30254 4.39215 4.44350 4.44941 4.49133 4.56157 4.63671 4.70230 4.80205 4.83396 4.88839 4.99298 5.12671 5.17833 5.23187 5.29474 5.38383 5.40670 5.55821 5.61464 5.69082 5.79913 5.92055 6.09162 6.47660 6.53575 6.84949 7.03317 7.40654 7.48445 7.94073 8.65898 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.019836 B = 0.002291 C = 0.002146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.215743 B =12217.505629 C =13045.329776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.623 5.623 3 C 0.118 3.882 4 C 0.147 3.853 5 O -0.560 6.560 6 C -0.104 4.104 7 C -0.074 4.074 8 C -0.096 4.096 9 C -0.113 4.113 10 C -0.115 4.115 11 C -0.132 4.132 12 C -0.106 4.106 13 C -0.134 4.134 14 C 0.698 3.302 15 O -0.614 6.614 16 N -0.724 5.724 17 C 0.141 3.859 18 C 0.434 3.566 19 O -0.624 6.624 20 N -0.559 5.559 21 C -0.336 4.336 22 H 0.087 0.913 23 C -0.011 4.011 24 N -0.916 5.916 25 Si 0.997 3.003 26 H -0.270 1.270 27 H -0.272 1.272 28 H -0.269 1.269 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.095 0.905 32 H 0.081 0.919 33 H 0.113 0.887 34 H 0.368 0.632 35 H 0.075 0.925 36 H 0.100 0.900 37 H 0.096 0.904 38 H 0.105 0.895 39 H 0.144 0.856 40 H 0.146 0.854 41 H 0.134 0.866 42 H 0.104 0.896 43 H 0.409 0.591 44 H 0.092 0.908 45 H 0.090 0.910 46 H 0.399 0.601 47 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.284 27.425 -2.992 27.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.360 5.360 3 C -0.005 4.005 4 C 0.105 3.895 5 O -0.366 6.366 6 C -0.142 4.142 7 C -0.111 4.111 8 C -0.096 4.096 9 C -0.131 4.131 10 C -0.133 4.133 11 C -0.150 4.150 12 C -0.124 4.124 13 C -0.134 4.134 14 C 0.400 3.600 15 O -0.495 6.495 16 N -0.383 5.383 17 C 0.012 3.988 18 C 0.221 3.779 19 O -0.512 6.512 20 N -0.195 5.195 21 C -0.465 4.465 22 H 0.105 0.895 23 C -0.212 4.212 24 N -0.556 5.556 25 Si 0.820 3.180 26 H -0.196 1.196 27 H -0.197 1.197 28 H -0.194 1.194 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.113 0.887 32 H 0.100 0.900 33 H 0.131 0.869 34 H 0.215 0.785 35 H 0.094 0.906 36 H 0.118 0.882 37 H 0.114 0.886 38 H 0.124 0.876 39 H 0.161 0.839 40 H 0.164 0.836 41 H 0.152 0.848 42 H 0.122 0.878 43 H 0.248 0.752 44 H 0.110 0.890 45 H 0.108 0.892 46 H 0.233 0.767 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.665 27.855 -3.050 28.260 hybrid contribution -0.733 -1.952 -0.025 2.085 sum -4.397 25.902 -3.075 26.452 Atomic orbital electron populations 1.22238 0.78119 1.03941 1.03349 1.46908 1.07305 1.03962 1.77791 1.22131 0.98219 0.84090 0.96096 1.21492 0.88058 0.89524 0.90394 1.86529 1.50385 1.22488 1.77155 1.22336 0.97739 0.89870 1.04224 1.21109 0.90458 0.97506 1.02004 1.20784 0.96612 0.93968 0.98237 1.20920 0.92992 1.00997 0.98189 1.21375 0.99842 0.92946 0.99125 1.21264 0.97292 0.96571 0.99902 1.20613 0.94546 0.98833 0.98437 1.21070 0.96655 0.95199 1.00471 1.15951 0.84974 0.80879 0.78232 1.90940 1.12506 1.86681 1.59343 1.44883 1.10977 1.03367 1.79080 1.20593 0.92888 0.81298 1.04032 1.20388 0.89417 0.84545 0.83512 1.90461 1.18020 1.84648 1.58034 1.41839 1.09880 1.04315 1.63427 1.19732 0.91060 0.85389 1.50346 0.89525 1.26136 0.98451 1.00787 0.95819 1.69683 1.13803 1.22853 1.49306 0.84868 0.77670 0.76743 0.78711 1.19560 1.19698 1.19390 0.91164 0.91652 0.88654 0.90046 0.86856 0.78452 0.90644 0.88152 0.88598 0.87642 0.83851 0.83645 0.84838 0.87758 0.75160 0.89009 0.89171 0.76728 0.91081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.26 9.21 127.77 1.18 2.43 16 2 N -0.62 -14.84 2.51 -864.93 -2.17 -17.01 16 3 C 0.12 2.43 4.65 86.38 0.40 2.84 16 4 C 0.15 3.16 1.08 -10.87 -0.01 3.15 16 5 O -0.56 -16.59 12.47 -142.35 -1.77 -18.37 16 6 C -0.10 -1.67 6.32 31.51 0.20 -1.47 16 7 C -0.07 -0.83 6.76 30.52 0.21 -0.62 16 8 C -0.10 -1.51 6.14 -19.59 -0.12 -1.63 16 9 C -0.11 -1.53 10.04 22.30 0.22 -1.30 16 10 C -0.12 -1.60 10.05 22.24 0.22 -1.38 16 11 C -0.13 -2.26 10.05 22.24 0.22 -2.04 16 12 C -0.11 -2.18 7.15 22.30 0.16 -2.02 16 13 C -0.13 -2.66 4.56 -19.59 -0.09 -2.75 16 14 C 0.70 22.17 6.89 179.06 1.23 23.40 16 15 O -0.61 -23.42 14.99 2.64 0.04 -23.38 16 16 N -0.72 -24.07 5.39 -482.30 -2.60 -26.67 16 17 C 0.14 5.21 6.15 85.63 0.53 5.73 16 18 C 0.43 20.02 7.85 87.66 0.69 20.71 16 19 O -0.62 -31.91 15.24 -3.05 -0.05 -31.96 16 20 N -0.56 -28.12 5.29 -306.98 -1.62 -29.74 16 21 C -0.34 -18.48 9.68 84.04 0.81 -17.66 16 22 H 0.09 5.00 7.16 -2.91 -0.02 4.98 16 23 C -0.01 -0.59 5.50 84.93 0.47 -0.12 16 24 N -0.92 -48.87 13.05 21.66 0.28 -48.59 16 25 Si 1.00 41.74 29.55 68.60 2.03 43.77 16 26 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 27 H -0.27 -10.87 7.11 99.48 0.71 -10.17 16 28 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 29 H 0.07 1.33 4.37 -2.39 -0.01 1.32 16 30 H 0.06 1.35 6.36 -2.39 -0.02 1.34 16 31 H 0.09 1.36 7.89 -2.39 -0.02 1.35 16 32 H 0.08 1.97 7.42 -2.38 -0.02 1.95 16 33 H 0.11 1.63 7.89 -2.39 -0.02 1.61 16 34 H 0.37 11.46 6.93 -74.05 -0.51 10.95 16 35 H 0.07 1.40 8.11 -2.39 -0.02 1.38 16 36 H 0.10 1.30 7.90 -2.39 -0.02 1.28 16 37 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.11 0.75 8.14 -2.38 -0.02 0.73 16 39 H 0.14 1.20 8.06 -2.91 -0.02 1.17 16 40 H 0.15 1.31 8.06 -2.91 -0.02 1.29 16 41 H 0.13 1.93 8.06 -2.91 -0.02 1.90 16 42 H 0.10 2.38 7.10 -2.91 -0.02 2.36 16 43 H 0.41 13.40 5.17 -92.71 -0.48 12.92 16 44 H 0.09 3.27 8.14 -2.38 -0.02 3.25 16 45 H 0.09 3.23 8.14 -2.38 -0.02 3.21 16 46 H 0.40 19.36 7.90 -92.71 -0.73 18.63 16 47 H 0.28 13.96 8.31 -92.71 -0.77 13.19 16 Total: -1.00 -69.83 381.14 -0.23 -70.06 By element: Atomic # 1 Polarization: 55.31 SS G_CDS: -0.68 Total: 54.62 kcal Atomic # 6 Polarization: 20.94 SS G_CDS: 6.32 Total: 27.26 kcal Atomic # 7 Polarization: -115.90 SS G_CDS: -6.11 Total: -122.01 kcal Atomic # 8 Polarization: -71.92 SS G_CDS: -1.78 Total: -73.70 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 2.03 Total: 43.77 kcal Total: -69.83 -0.23 -70.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827072100.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.500 kcal (2) G-P(sol) polarization free energy of solvation -69.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds