Wall clock time and date at job start Wed Apr 1 2020 04:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.33092 * 117.74641 * 2 1 4 4 O 1.21285 * 118.32758 * 2.17608 * 3 2 1 5 5 C 1.50172 * 123.42752 * 182.39161 * 3 2 1 6 6 C 1.53074 * 109.89020 * 342.22548 * 5 3 2 7 7 C 1.53347 * 108.42415 * 48.90567 * 6 5 3 8 8 C 1.45751 * 117.94505 * 179.79462 * 2 1 3 9 9 H 1.08998 * 109.30187 * 281.02272 * 8 2 1 10 10 C 1.50694 * 109.30778 * 40.61184 * 8 2 1 11 11 O 1.21284 * 119.99523 * 32.58323 * 10 8 2 12 12 N 1.34767 * 120.00301 * 212.58570 * 10 8 2 13 13 C 1.39583 * 120.00313 * 179.97438 * 12 10 8 14 14 N 1.32279 * 119.72457 * 359.97438 * 13 12 10 15 15 C 1.31950 * 121.69075 * 180.02562 * 14 13 12 16 16 C 1.38083 * 120.95778 * 0.02562 * 15 14 13 17 17 C 1.38785 * 119.35063 * 359.67998 * 16 15 14 18 18 C 1.38799 * 118.44813 * 0.58251 * 17 16 15 19 19 O 1.35971 * 120.49808 * 179.71226 * 18 17 16 20 20 C 1.42896 * 117.00126 * 359.72564 * 19 18 17 21 21 C 1.53005 * 109.47425 * 179.97438 * 20 19 18 22 22 C 1.50706 * 109.47084 * 179.97438 * 21 20 19 23 23 H 1.08000 * 119.99865 * 359.97438 * 22 21 20 24 24 C 1.37873 * 119.99312 * 180.02562 * 22 21 20 25 25 N 1.31512 * 120.00803 * 359.97438 * 24 22 21 26 26 Si 1.86810 * 119.99437 * 180.02562 * 24 22 21 27 27 H 1.48502 * 109.46892 * 180.02562 * 26 24 22 28 28 H 1.48500 * 109.46940 * 299.99695 * 26 24 22 29 29 H 1.48492 * 109.47218 * 59.99772 * 26 24 22 30 30 H 1.08997 * 109.46724 * 275.04404 * 1 2 3 31 31 H 1.09001 * 109.47351 * 35.04241 * 1 2 3 32 32 H 1.09004 * 109.47360 * 155.04431 * 1 2 3 33 33 H 1.09007 * 109.40110 * 222.10243 * 5 3 2 34 34 H 1.08998 * 109.33462 * 102.31399 * 5 3 2 35 35 H 1.09000 * 109.67588 * 289.17488 * 6 5 3 36 36 H 1.09001 * 109.70071 * 168.65116 * 6 5 3 37 37 H 1.08997 * 109.60589 * 172.71030 * 7 6 5 38 38 H 1.09003 * 109.73895 * 52.29679 * 7 6 5 39 39 H 0.97001 * 120.00326 * 359.97438 * 12 10 8 40 40 H 1.08002 * 119.52463 * 179.97438 * 15 14 13 41 41 H 1.08002 * 120.32856 * 180.02562 * 16 15 14 42 42 H 1.07997 * 120.77397 * 180.31753 * 17 16 15 43 43 H 1.09003 * 109.47378 * 60.00004 * 20 19 18 44 44 H 1.09006 * 109.47150 * 299.99947 * 20 19 18 45 45 H 1.09003 * 109.46670 * 59.99778 * 21 20 19 46 46 H 1.09000 * 109.46834 * 299.99827 * 21 20 19 47 47 H 0.97003 * 119.99793 * 0.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.0846 1.1779 0.0000 4 8 1.4084 2.1839 0.0405 5 6 3.5780 1.3271 -0.0523 6 6 4.2472 0.0066 0.3371 7 6 3.5935 -1.1237 -0.4671 8 6 2.1480 -1.2875 0.0046 9 1 2.1431 -1.6944 1.0158 10 6 1.4278 -2.2370 -0.9177 11 8 0.8755 -1.8149 -1.9116 12 7 1.3972 -3.5550 -0.6382 13 6 0.7296 -4.4343 -1.4923 14 7 0.1283 -3.9680 -2.5743 15 6 -0.5142 -4.7641 -3.4077 16 6 -0.5838 -6.1241 -3.1795 17 6 0.0377 -6.6587 -2.0597 18 6 0.7015 -5.7972 -1.1974 19 8 1.3197 -6.2754 -0.0848 20 6 1.2440 -7.6837 0.1448 21 6 1.9927 -8.0315 1.4331 22 6 1.9122 -9.5168 1.6755 23 1 1.3800 -10.1493 0.9805 24 6 2.5172 -10.0678 2.7851 25 7 3.1649 -9.2975 3.6317 26 14 2.4181 -11.9090 3.0852 27 1 3.1436 -12.2463 4.3363 28 1 0.9952 -12.3135 3.2144 29 1 3.0363 -12.6305 1.9440 30 1 -0.3633 0.0904 1.0237 31 1 -0.3634 0.8414 -0.5901 32 1 -0.3634 -0.9317 -0.4336 33 1 3.8883 2.1086 0.6414 34 1 3.8781 1.6006 -1.0638 35 1 4.1094 -0.1744 1.4031 36 1 5.3117 0.0523 0.1071 37 1 4.1394 -2.0526 -0.3026 38 1 3.6058 -0.8752 -1.5283 39 1 1.8391 -3.8926 0.1565 40 1 -0.9932 -4.3457 -4.2806 41 1 -1.1121 -6.7664 -3.8687 42 1 0.0021 -7.7198 -1.8617 43 1 1.6978 -8.2134 -0.6929 44 1 0.1995 -7.9808 0.2397 45 1 1.5393 -7.5019 2.2710 46 1 3.0371 -7.7346 1.3377 47 1 3.2167 -8.3415 3.4757 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000906520729.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:23 Heat of formation + Delta-G solvation = -86.571091 kcal Electronic energy + Delta-G solvation = -30407.353896 eV Core-core repulsion = 26168.920017 eV Total energy + Delta-G solvation = -4238.433879 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.45733 -41.69864 -40.32480 -39.19857 -37.42364 -36.18695 -35.81253 -35.06456 -32.96339 -32.30308 -31.36314 -30.11717 -28.25490 -26.85150 -26.49159 -24.92992 -24.00888 -23.33761 -23.09296 -21.70005 -20.08494 -19.59535 -19.06201 -18.63417 -18.40261 -17.70429 -17.60555 -17.28199 -17.23525 -16.52835 -16.20373 -15.91627 -15.65728 -15.53673 -15.33981 -15.25590 -15.01236 -14.79284 -14.62815 -14.45379 -13.90213 -13.80975 -13.60124 -13.59021 -13.29665 -13.07877 -13.02530 -12.70438 -12.58570 -12.05378 -11.99108 -11.92498 -11.90447 -11.82096 -11.79681 -11.54864 -10.92534 -10.85401 -10.57502 -10.48747 -10.36488 -9.89409 -8.95134 -8.72331 -6.45173 -0.00613 0.21727 1.26641 1.40180 1.56222 1.63438 1.66947 1.82475 1.99088 2.03105 2.58660 2.80100 3.10816 3.13722 3.40442 3.52586 3.57244 3.77136 3.78118 3.88118 3.98598 4.06059 4.12525 4.15893 4.22397 4.23253 4.39452 4.42362 4.49978 4.60383 4.69402 4.73049 4.77600 4.89200 4.90514 4.96212 5.04030 5.08715 5.14852 5.17067 5.23791 5.26450 5.46237 5.85553 6.04329 6.12541 6.21682 6.25764 6.50505 6.78405 6.97941 7.12943 7.36895 8.69872 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011487 B = 0.002516 C = 0.002153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2437.045646 B =11125.072379 C =13003.053826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.587 5.587 3 C 0.512 3.488 4 O -0.598 6.598 5 C -0.131 4.131 6 C -0.112 4.112 7 C -0.127 4.127 8 C 0.132 3.868 9 H 0.126 0.874 10 C 0.498 3.502 11 O -0.501 6.501 12 N -0.643 5.643 13 C 0.312 3.688 14 N -0.471 5.471 15 C 0.074 3.926 16 C -0.142 4.142 17 C -0.150 4.150 18 C 0.044 3.956 19 O -0.326 6.326 20 C 0.091 3.909 21 C 0.015 3.985 22 C -0.621 4.621 23 H 0.061 0.939 24 C -0.032 4.032 25 N -0.934 5.934 26 Si 1.117 2.883 27 H -0.286 1.286 28 H -0.268 1.268 29 H -0.267 1.267 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.115 0.885 34 H 0.111 0.889 35 H 0.087 0.913 36 H 0.112 0.888 37 H 0.114 0.886 38 H 0.071 0.929 39 H 0.431 0.569 40 H 0.185 0.815 41 H 0.175 0.825 42 H 0.155 0.845 43 H 0.064 0.936 44 H 0.062 0.938 45 H 0.000 1.000 46 H 0.002 0.998 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.522 12.844 -10.647 16.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.319 5.319 3 C 0.303 3.697 4 O -0.480 6.480 5 C -0.170 4.170 6 C -0.149 4.149 7 C -0.165 4.165 8 C 0.024 3.976 9 H 0.143 0.857 10 C 0.284 3.716 11 O -0.372 6.372 12 N -0.293 5.293 13 C 0.080 3.920 14 N -0.187 5.187 15 C -0.082 4.082 16 C -0.163 4.163 17 C -0.176 4.176 18 C -0.006 4.006 19 O -0.240 6.240 20 C 0.016 3.984 21 C -0.022 4.022 22 C -0.659 4.659 23 H 0.079 0.921 24 C -0.231 4.231 25 N -0.570 5.570 26 Si 0.938 3.062 27 H -0.212 1.212 28 H -0.193 1.193 29 H -0.192 1.192 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.134 0.866 34 H 0.129 0.871 35 H 0.105 0.895 36 H 0.130 0.870 37 H 0.132 0.868 38 H 0.090 0.910 39 H 0.270 0.730 40 H 0.202 0.798 41 H 0.192 0.808 42 H 0.172 0.828 43 H 0.082 0.918 44 H 0.080 0.920 45 H 0.018 0.982 46 H 0.020 0.980 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.607 13.547 -10.288 17.021 hybrid contribution -0.677 0.082 -0.514 0.853 sum -1.283 13.629 -10.802 17.437 Atomic orbital electron populations 1.21726 0.79862 1.02908 1.02009 1.46987 1.07527 1.05378 1.72001 1.20925 0.92783 0.81522 0.74471 1.90700 1.67828 1.36886 1.52559 1.21763 0.87596 1.01549 1.06088 1.21674 1.01568 0.90680 1.00964 1.21970 0.90236 1.02987 1.01293 1.21205 0.93975 0.82206 1.00176 0.85652 1.21359 0.80837 0.82377 0.87047 1.90813 1.42603 1.76452 1.27338 1.43494 1.52751 1.06381 1.26636 1.17939 0.97496 0.84659 0.91913 1.67671 1.09584 1.39032 1.02383 1.23031 0.96449 0.90518 0.98226 1.22287 0.99851 0.96553 0.97605 1.21907 0.99083 1.01054 0.95577 1.19709 0.98440 0.92385 0.90096 1.85995 1.71052 1.27278 1.39663 1.22776 1.00529 0.76337 0.98739 1.19108 0.94762 0.96301 0.92060 1.22232 1.38608 0.92895 1.12138 0.92093 1.27385 0.92288 1.10946 0.92450 1.70911 1.41136 1.06722 1.38265 0.82927 0.77567 0.68973 0.76726 1.21158 1.19288 1.19161 0.91551 0.92067 0.91281 0.86630 0.87137 0.89477 0.87002 0.86751 0.91048 0.72959 0.79802 0.80788 0.82751 0.91804 0.91960 0.98184 0.97981 0.93168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.95 9.51 127.77 1.22 3.16 16 2 N -0.59 -13.27 2.94 -831.91 -2.45 -15.71 16 3 C 0.51 12.09 7.46 87.75 0.65 12.75 16 4 O -0.60 -19.25 16.28 -3.05 -0.05 -19.30 16 5 C -0.13 -1.78 6.03 29.71 0.18 -1.60 16 6 C -0.11 -0.97 6.03 30.74 0.19 -0.79 16 7 C -0.13 -1.60 5.29 30.69 0.16 -1.43 16 8 C 0.13 2.34 3.14 44.36 0.14 2.48 16 9 H 0.13 1.61 8.13 -2.39 -0.02 1.59 16 10 C 0.50 12.34 5.64 87.66 0.49 12.84 16 11 O -0.50 -16.15 13.33 -3.04 -0.04 -16.19 16 12 N -0.64 -16.16 5.39 -308.03 -1.66 -17.82 16 13 C 0.31 9.23 7.45 132.98 0.99 10.22 16 14 N -0.47 -14.12 7.88 -192.58 -1.52 -15.63 16 15 C 0.07 1.71 11.17 84.64 0.95 2.65 16 16 C -0.14 -2.83 10.10 22.36 0.23 -2.61 16 17 C -0.15 -3.73 9.14 22.54 0.21 -3.53 16 18 C 0.04 1.32 6.72 22.70 0.15 1.47 16 19 O -0.33 -10.99 9.38 -93.22 -0.87 -11.86 16 20 C 0.09 3.34 4.70 71.98 0.34 3.68 16 21 C 0.01 0.71 4.65 29.85 0.14 0.85 16 22 C -0.62 -32.45 9.11 25.60 0.23 -32.22 16 23 H 0.06 3.01 7.74 -2.91 -0.02 2.99 16 24 C -0.03 -1.74 5.46 84.65 0.46 -1.28 16 25 N -0.93 -54.63 13.65 21.45 0.29 -54.33 16 26 Si 1.12 46.52 29.90 68.60 2.05 48.57 16 27 H -0.29 -12.10 7.11 99.48 0.71 -11.39 16 28 H -0.27 -10.28 7.11 99.48 0.71 -9.57 16 29 H -0.27 -10.19 7.11 99.48 0.71 -9.48 16 30 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.06 1.73 7.37 -2.39 -0.02 1.71 16 32 H 0.07 1.85 5.51 -2.39 -0.01 1.84 16 33 H 0.12 1.32 8.14 -2.38 -0.02 1.30 16 34 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.09 0.65 8.13 -2.39 -0.02 0.63 16 36 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 37 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.07 1.10 8.10 -2.39 -0.02 1.08 16 39 H 0.43 9.24 8.04 -92.71 -0.75 8.50 16 40 H 0.19 3.06 8.06 -2.91 -0.02 3.04 16 41 H 0.17 2.10 8.06 -2.91 -0.02 2.08 16 42 H 0.15 3.51 6.44 -2.91 -0.02 3.49 16 43 H 0.06 2.22 7.69 -2.39 -0.02 2.20 16 44 H 0.06 2.18 7.71 -2.38 -0.02 2.16 16 45 H 0.00 -0.01 8.01 -2.39 -0.02 -0.03 16 46 H 0.00 0.09 8.01 -2.39 -0.02 0.07 16 47 H 0.26 15.22 7.22 -92.71 -0.67 14.55 16 Total: -1.00 -77.46 386.60 2.83 -74.63 By element: Atomic # 1 Polarization: 20.66 SS G_CDS: 0.36 Total: 21.02 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: 6.72 Total: 6.63 kcal Atomic # 7 Polarization: -98.17 SS G_CDS: -5.33 Total: -103.50 kcal Atomic # 8 Polarization: -46.39 SS G_CDS: -0.96 Total: -47.35 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 2.05 Total: 48.57 kcal Total: -77.46 2.83 -74.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906520729.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.941 kcal (2) G-P(sol) polarization free energy of solvation -77.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds