Wall clock time and date at job start Wed Apr 1 2020 04:48:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.34782 * 119.99543 * 2 1 4 4 O 1.21548 * 120.00019 * 0.02562 * 3 2 1 5 5 C 1.47863 * 119.99813 * 180.02562 * 3 2 1 6 6 C 1.39711 * 120.07113 * 359.71993 * 5 3 2 7 7 C 1.38051 * 120.14096 * 180.27642 * 6 5 3 8 8 C 1.38096 * 120.30213 * 0.02562 * 7 6 5 9 9 C 1.39667 * 120.14146 * 359.97438 * 8 7 6 10 10 C 1.47862 * 120.07272 * 179.97438 * 9 8 7 11 11 O 1.21554 * 120.00022 * 180.02562 * 10 9 8 12 12 N 1.34772 * 120.00175 * 0.03298 * 10 9 8 13 13 C 1.46502 * 120.00059 * 179.97438 * 12 10 9 14 14 C 1.53006 * 109.46803 * 179.97438 * 13 12 10 15 15 H 1.08993 * 110.89009 * 302.57197 * 14 13 12 16 16 C 1.54911 * 111.00136 * 66.45718 * 14 13 12 17 17 N 1.47427 * 104.82869 * 155.07906 * 16 14 13 18 18 C 1.36939 * 125.64750 * 155.83400 * 17 16 14 19 19 H 1.08007 * 119.99660 * 0.02562 * 18 17 16 20 20 C 1.38807 * 120.00091 * 180.02562 * 18 17 16 21 21 N 1.31613 * 120.00335 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99910 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.47022 * 90.00011 * 22 20 18 24 24 H 1.48500 * 109.47403 * 209.99907 * 22 20 18 25 25 H 1.48494 * 109.47514 * 330.00168 * 22 20 18 26 26 C 1.47025 * 108.70582 * 335.87063 * 17 16 14 27 27 C 1.54326 * 107.27001 * 1.05948 * 26 17 16 28 28 H 1.08997 * 110.71928 * 140.55254 * 27 26 17 29 29 O 1.42893 * 110.71882 * 263.82822 * 27 26 17 30 30 C 1.39295 * 120.07414 * 180.02562 * 5 3 2 31 31 H 1.08997 * 109.47096 * 299.99862 * 1 2 3 32 32 H 1.08999 * 109.47012 * 60.00009 * 1 2 3 33 33 H 1.09000 * 109.46869 * 180.02562 * 1 2 3 34 34 H 0.96994 * 120.00663 * 180.02562 * 2 1 3 35 35 H 1.08000 * 119.92599 * 0.27802 * 6 5 3 36 36 H 1.08003 * 119.85274 * 180.02562 * 7 6 5 37 37 H 1.07997 * 119.93396 * 179.97438 * 8 7 6 38 38 H 0.97003 * 119.99937 * 359.97438 * 12 10 9 39 39 H 1.08995 * 109.47309 * 299.99734 * 13 12 10 40 40 H 1.09005 * 109.46664 * 60.00011 * 13 12 10 41 41 H 1.08993 * 110.36768 * 273.91588 * 16 14 13 42 42 H 1.09002 * 110.36653 * 36.24287 * 16 14 13 43 43 H 0.96997 * 120.00818 * 180.02562 * 21 20 18 44 44 H 1.09003 * 109.87930 * 120.47237 * 26 17 16 45 45 H 1.08999 * 109.88164 * 241.48428 * 26 17 16 46 46 H 0.96699 * 114.00275 * 293.52194 * 29 27 26 47 47 H 1.08003 * 120.14257 * 359.74304 * 30 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 1.5311 2.2199 0.0005 5 6 3.6175 1.1674 -0.0006 6 6 4.3176 -0.0416 0.0048 7 6 5.6981 -0.0432 0.0100 8 6 6.3963 1.1482 0.0105 9 6 5.7088 2.3640 0.0052 10 6 6.4578 3.6388 0.0063 11 8 5.8581 4.6961 0.0021 12 7 7.8055 3.6286 0.0118 13 6 8.5476 4.8917 0.0123 14 6 10.0497 4.6006 0.0197 15 1 10.3232 3.9903 0.8804 16 6 10.4908 3.9249 -1.3027 17 7 11.9219 4.2533 -1.4352 18 6 12.8427 3.5347 -2.1499 19 1 12.5395 2.6431 -2.6788 20 6 14.1658 3.9521 -2.1947 21 7 14.5354 5.0383 -1.5499 22 14 15.4221 2.9714 -3.1691 23 1 15.4740 3.4803 -4.5633 24 1 16.7592 3.1157 -2.5394 25 1 15.0318 1.5387 -3.1794 26 6 12.1969 5.4796 -0.6722 27 6 10.8713 5.9164 -0.0136 28 1 11.0463 6.2874 0.9962 29 8 10.2127 6.9037 -0.8095 30 6 4.3155 2.3728 0.0000 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.9501 -0.8399 -0.0004 35 1 3.7776 -0.9770 0.0048 36 1 6.2346 -0.9806 0.0137 37 1 7.4762 1.1401 0.0151 38 1 8.2841 2.7848 0.0154 39 1 8.2924 5.4635 -0.8798 40 1 8.2850 5.4670 0.9002 41 1 10.3534 2.8454 -1.2414 42 1 9.9286 4.3327 -2.1429 43 1 15.4599 5.3302 -1.5814 44 1 12.9438 5.2787 0.0958 45 1 12.5555 6.2607 -1.3426 46 1 10.6855 7.7455 -0.8627 47 1 3.7790 3.3102 -0.0034 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958694915.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:48:15 Heat of formation + Delta-G solvation = -61.845981 kcal Electronic energy + Delta-G solvation = -29538.690582 eV Core-core repulsion = 25301.328864 eV Total energy + Delta-G solvation = -4237.361718 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.75265 -39.78040 -38.51853 -37.90270 -35.11584 -35.00053 -34.62337 -32.48510 -31.73400 -31.43080 -29.62942 -27.82401 -27.33956 -25.66816 -24.47823 -23.77497 -22.71102 -21.48287 -20.58110 -20.09431 -19.81722 -18.78512 -17.37384 -17.00062 -16.65831 -16.48201 -16.21764 -15.74213 -15.64465 -15.18163 -14.87992 -14.65508 -14.58106 -14.12030 -14.09016 -13.77215 -13.69783 -13.57291 -13.31343 -12.80724 -12.79982 -12.60271 -12.55572 -12.35875 -11.89010 -11.70452 -11.43599 -11.25407 -10.84536 -10.67257 -10.50234 -10.41504 -10.21100 -10.07846 -9.87151 -9.78023 -9.67082 -9.43476 -9.38022 -9.20399 -8.91695 -8.69566 -6.90238 -5.78050 -3.11256 0.27267 0.73242 2.27623 2.69527 2.94314 3.16194 3.35906 3.40836 3.42637 3.61985 4.18501 4.30173 4.42403 4.43320 4.66807 4.68751 4.72685 4.80659 5.00189 5.06633 5.06826 5.21009 5.30119 5.36579 5.38794 5.50643 5.51221 5.57384 5.80801 5.85015 5.87691 5.88555 5.91497 6.03930 6.07287 6.32751 6.35771 6.36564 6.44669 6.57406 6.86129 6.98871 7.35548 7.45068 7.50804 7.70693 7.77767 8.17251 8.18939 8.22949 9.14594 9.75353 10.40873 11.33945 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018154 B = 0.001997 C = 0.001834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.974234 B =14019.828031 C =15265.384019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.733 5.733 3 C 0.559 3.441 4 O -0.529 6.529 5 C -0.147 4.147 6 C -0.066 4.066 7 C -0.131 4.131 8 C -0.059 4.059 9 C -0.135 4.135 10 C 0.554 3.446 11 O -0.533 6.533 12 N -0.719 5.719 13 C 0.139 3.861 14 C -0.110 4.110 15 H 0.089 0.911 16 C 0.145 3.855 17 N -0.603 5.603 18 C -0.227 4.227 19 H 0.078 0.922 20 C -0.009 4.009 21 N -0.924 5.924 22 Si 0.913 3.087 23 H -0.289 1.289 24 H -0.290 1.290 25 H -0.281 1.281 26 C 0.153 3.847 27 C 0.083 3.917 28 H 0.057 0.943 29 O -0.564 6.564 30 C -0.001 4.001 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.077 0.923 34 H 0.401 0.599 35 H 0.129 0.871 36 H 0.138 0.862 37 H 0.135 0.865 38 H 0.399 0.601 39 H 0.083 0.917 40 H 0.066 0.934 41 H 0.035 0.965 42 H 0.026 0.974 43 H 0.253 0.747 44 H 0.052 0.948 45 H 0.050 0.950 46 H 0.376 0.624 47 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.108 -12.587 6.578 25.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.386 5.386 3 C 0.346 3.654 4 O -0.405 6.405 5 C -0.150 4.150 6 C -0.085 4.085 7 C -0.149 4.149 8 C -0.078 4.078 9 C -0.138 4.138 10 C 0.340 3.660 11 O -0.411 6.411 12 N -0.371 5.371 13 C 0.016 3.984 14 C -0.130 4.130 15 H 0.107 0.893 16 C 0.018 3.982 17 N -0.329 5.329 18 C -0.355 4.355 19 H 0.096 0.904 20 C -0.205 4.205 21 N -0.572 5.572 22 Si 0.744 3.256 23 H -0.216 1.216 24 H -0.217 1.217 25 H -0.207 1.207 26 C 0.028 3.972 27 C 0.023 3.977 28 H 0.075 0.925 29 O -0.369 6.369 30 C -0.021 4.021 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.095 0.905 34 H 0.236 0.764 35 H 0.147 0.853 36 H 0.156 0.844 37 H 0.153 0.847 38 H 0.234 0.766 39 H 0.101 0.899 40 H 0.084 0.916 41 H 0.054 0.946 42 H 0.044 0.956 43 H 0.063 0.937 44 H 0.071 0.929 45 H 0.068 0.932 46 H 0.223 0.777 47 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -22.182 -11.518 6.458 25.815 hybrid contribution 1.773 -0.989 -0.453 2.080 sum -20.409 -12.507 6.004 24.678 Atomic orbital electron populations 1.21573 0.79004 1.02388 1.02674 1.45690 1.07999 1.08512 1.76393 1.18258 0.87122 0.83815 0.76159 1.90815 1.69787 1.31080 1.48852 1.19825 0.92830 0.94255 1.08138 1.21444 0.94755 0.96780 0.95515 1.21070 0.93806 0.98523 1.01505 1.21635 1.00575 0.91654 0.93910 1.20027 0.94029 0.93608 1.06132 1.18126 0.82314 0.88503 0.77026 1.90803 1.68692 1.32040 1.49575 1.46019 1.05804 1.10716 1.74529 1.21237 0.89689 0.84359 1.03083 1.22690 0.92652 0.97063 1.00581 0.89311 1.21573 0.86976 0.96419 0.93187 1.44369 1.02739 1.27450 1.58346 1.19065 0.88071 1.05243 1.23164 0.90379 1.24797 0.97197 0.97983 1.00549 1.69923 1.16662 1.24424 1.46205 0.86096 0.80899 0.79160 0.79453 1.21591 1.21675 1.20695 1.21866 0.90732 0.89652 0.94994 1.23107 0.93835 0.87606 0.93151 0.92476 1.86402 1.51252 1.25706 1.73574 1.21393 0.92474 0.98531 0.89718 0.91975 0.91950 0.90462 0.76398 0.85292 0.84424 0.84689 0.76557 0.89922 0.91602 0.94640 0.95612 0.93712 0.92950 0.93170 0.77734 0.83198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.45 10.70 59.85 0.64 1.09 16 2 N -0.73 -4.67 5.66 -68.04 -0.39 -5.06 16 3 C 0.56 5.86 7.77 -12.32 -0.10 5.76 16 4 O -0.53 -7.75 16.34 5.32 0.09 -7.66 16 5 C -0.15 -1.43 5.87 -105.01 -0.62 -2.05 16 6 C -0.07 -0.42 9.54 -39.10 -0.37 -0.80 16 7 C -0.13 -0.85 10.02 -39.70 -0.40 -1.25 16 8 C -0.06 -0.50 9.54 -39.10 -0.37 -0.87 16 9 C -0.13 -1.57 5.87 -105.02 -0.62 -2.18 16 10 C 0.55 8.04 7.77 -12.32 -0.10 7.95 16 11 O -0.53 -9.81 16.34 5.32 0.09 -9.72 16 12 N -0.72 -9.49 5.36 -61.24 -0.33 -9.82 16 13 C 0.14 2.14 4.74 -4.04 -0.02 2.12 16 14 C -0.11 -1.82 3.03 -88.47 -0.27 -2.08 16 15 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 16 C 0.14 2.87 6.40 -2.53 -0.02 2.85 16 17 N -0.60 -14.88 3.39 -170.07 -0.58 -15.46 16 18 C -0.23 -6.17 10.28 -15.06 -0.15 -6.33 16 19 H 0.08 2.04 7.83 -52.48 -0.41 1.63 16 20 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16 21 N -0.92 -26.44 10.31 55.49 0.57 -25.87 16 22 Si 0.91 21.66 29.55 -169.99 -5.02 16.64 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 25 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 26 C 0.15 3.53 5.14 -3.06 -0.02 3.51 16 27 C 0.08 1.49 4.09 -24.89 -0.10 1.38 16 28 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 29 O -0.56 -9.77 12.09 -35.23 -0.43 -10.19 16 30 C 0.00 -0.02 9.14 -38.78 -0.35 -0.37 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.08 0.15 8.14 -51.93 -0.42 -0.27 16 34 H 0.40 1.25 6.85 -40.82 -0.28 0.97 16 35 H 0.13 0.36 6.39 -52.49 -0.34 0.02 16 36 H 0.14 0.52 8.06 -52.48 -0.42 0.10 16 37 H 0.14 0.90 6.39 -52.49 -0.34 0.56 16 38 H 0.40 4.28 6.36 -40.82 -0.26 4.02 16 39 H 0.08 1.47 7.42 -51.93 -0.39 1.09 16 40 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.03 0.55 8.00 -51.93 -0.42 0.14 16 43 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 44 H 0.05 1.33 7.38 -51.93 -0.38 0.94 16 45 H 0.05 1.29 7.43 -51.93 -0.39 0.91 16 46 H 0.38 5.14 9.12 45.56 0.42 5.56 16 47 H 0.15 2.12 7.23 -52.48 -0.38 1.74 16 LS Contribution 389.52 15.07 5.87 5.87 Total: -1.00 -36.96 389.52 -8.75 -45.71 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -5.67 Total: 7.16 kcal Atomic # 6 Polarization: 11.35 SS G_CDS: -2.95 Total: 8.39 kcal Atomic # 7 Polarization: -55.48 SS G_CDS: -0.72 Total: -56.20 kcal Atomic # 8 Polarization: -27.32 SS G_CDS: -0.25 Total: -27.57 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -36.96 -8.75 -45.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958694915.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.138 kcal (2) G-P(sol) polarization free energy of solvation -36.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds