Wall clock time and date at job start Wed Apr 1 2020 05:21:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42899 * 1
3 3 C 1.35751 * 117.00189 * 2 1
4 4 C 1.39210 * 120.80991 * 0.02562 * 3 2 1
5 5 C 1.38324 * 119.28460 * 179.97438 * 4 3 2
6 6 N 1.31615 * 120.96487 * 359.72817 * 5 4 3
7 7 C 1.32794 * 121.78524 * 0.56429 * 6 5 4
8 8 C 1.48180 * 119.69906 * 179.70654 * 7 6 5
9 9 O 1.21510 * 120.00201 * 179.73057 * 8 7 6
10 10 N 1.34781 * 120.00162 * 359.73001 * 8 7 6
11 11 C 1.47489 * 125.66043 * 0.02562 * 10 8 7
12 12 C 1.55022 * 104.89719 * 204.01005 * 11 10 8
13 13 C 1.54817 * 101.62759 * 323.72370 * 12 11 10
14 14 C 1.47183 * 125.66460 * 179.97438 * 10 8 7
15 15 C 1.52519 * 110.21358 * 152.89748 * 13 12 11
16 16 N 1.47308 * 108.40000 * 72.18554 * 15 13 12
17 17 C 1.36937 * 121.06258 * 229.36345 * 16 15 13
18 18 H 1.08004 * 119.99616 * 153.87299 * 17 16 15
19 19 C 1.38805 * 120.00174 * 333.86714 * 17 16 15
20 20 N 1.31621 * 120.00224 * 343.62925 * 19 17 16
21 21 Si 1.86805 * 119.99996 * 163.62214 * 19 17 16
22 22 H 1.48502 * 109.46885 * 0.02562 * 21 19 17
23 23 H 1.48492 * 109.47095 * 120.00278 * 21 19 17
24 24 H 1.48505 * 109.47148 * 240.00266 * 21 19 17
25 25 C 1.47170 * 117.86739 * 49.38271 * 16 15 13
26 26 C 1.53278 * 108.54959 * 308.86586 * 25 16 15
27 27 O 1.42065 * 110.30827 * 275.97105 * 13 12 11
28 28 C 1.39099 * 120.60243 * 359.43791 * 7 6 5
29 29 H 1.09001 * 109.47647 * 179.97438 * 1 2 3
30 30 H 1.09003 * 109.47141 * 300.00117 * 1 2 3
31 31 H 1.09008 * 109.47083 * 59.99700 * 1 2 3
32 32 H 1.07998 * 120.36306 * 359.96448 * 4 3 2
33 33 H 1.07997 * 119.51202 * 180.02562 * 5 4 3
34 34 H 1.09004 * 110.35240 * 322.86754 * 11 10 8
35 35 H 1.08999 * 110.35233 * 85.15092 * 11 10 8
36 36 H 1.08992 * 111.01533 * 81.68259 * 12 11 10
37 37 H 1.09001 * 111.00829 * 205.52989 * 12 11 10
38 38 H 1.08997 * 109.91290 * 297.87502 * 14 10 8
39 39 H 1.09005 * 109.90712 * 58.95230 * 14 10 8
40 40 H 1.08994 * 109.67733 * 191.90981 * 15 13 12
41 41 H 1.09003 * 109.67926 * 312.42086 * 15 13 12
42 42 H 0.96997 * 120.00176 * 180.02562 * 20 19 17
43 43 H 1.09000 * 109.62160 * 68.58784 * 25 16 15
44 44 H 1.09000 * 109.61965 * 188.95882 * 25 16 15
45 45 H 1.08998 * 109.50911 * 172.83094 * 26 25 16
46 46 H 1.08997 * 109.51212 * 292.98471 * 26 25 16
47 47 H 1.08003 * 120.50707 * 180.24755 * 28 7 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0453 1.2095 0.0000
4 6 1.3038 2.3877 0.0005
5 6 1.9644 3.6030 0.0011
6 7 3.2793 3.6589 0.0064
7 6 4.0262 2.5610 0.0004
8 6 5.5034 2.6779 0.0002
9 8 6.1921 1.6768 -0.0003
10 7 6.0831 3.8946 0.0007
11 6 5.3711 5.1863 0.0019
12 6 6.3769 6.1963 -0.6076
13 6 7.7212 5.6794 -0.0396
14 6 7.5317 4.1550 0.0012
15 6 8.8668 6.0528 -0.9747
16 7 9.1016 7.5030 -0.8664
17 6 9.1953 8.2889 -1.9838
18 1 8.9473 9.3386 -1.9280
19 6 9.6091 7.7366 -3.1882
20 7 10.2123 6.5669 -3.2030
21 14 9.3097 8.6534 -4.7880
22 1 8.6194 9.9366 -4.5014
23 1 10.6093 8.9285 -5.4516
24 1 8.4628 7.8242 -5.6827
25 6 9.2326 8.0799 0.4811
26 6 8.0377 7.6230 1.3255
27 8 7.9365 6.1969 1.2658
28 6 3.4345 1.3021 -0.0002
29 1 -0.3634 -1.0276 -0.0005
30 1 -0.3633 0.5139 0.8900
31 1 -0.3634 0.5139 -0.8900
32 1 0.2243 2.3533 0.0004
33 1 1.3927 4.5192 0.0019
34 1 4.4742 5.1254 -0.6146
35 1 5.1130 5.4760 1.0205
36 1 6.3702 6.1460 -1.6963
37 1 6.1698 7.2098 -0.2638
38 1 7.9816 3.7489 0.9071
39 1 7.9908 3.7006 -0.8769
40 1 9.7679 5.5124 -0.6850
41 1 8.6006 5.7991 -2.0008
42 1 10.5018 6.1811 -4.0446
43 1 10.1587 7.7329 0.9394
44 1 9.2425 9.1678 0.4141
45 1 8.1824 7.9348 2.3598
46 1 7.1236 8.0695 0.9343
47 1 4.0435 0.4101 -0.0010
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000972493347.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:21:59
Heat of formation + Delta-G solvation = -24.946229 kcal
Electronic energy + Delta-G solvation = -31240.945850 eV
Core-core repulsion = 27005.184226 eV
Total energy + Delta-G solvation = -4235.761624 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 347.168 amu
Computer time = 1.16 seconds
Orbital eigenvalues (eV)
-41.13418 -40.02273 -38.94345 -38.04801 -36.07356 -34.43312 -32.17530 -31.88946
-31.29685 -30.90767 -29.39438 -28.10734 -27.42922 -26.00070 -24.16754 -23.69419
-23.39370 -22.32142 -21.33048 -20.06838 -18.85827 -18.17181 -17.61007 -17.10148
-16.48579 -16.34832 -16.09782 -15.76908 -15.49699 -15.27794 -14.82499 -14.77805
-14.36444 -14.20019 -14.13596 -13.87730 -13.50822 -13.38334 -12.98550 -12.75687
-12.68510 -12.52093 -12.21886 -12.08744 -11.98398 -11.68262 -11.29040 -11.07135
-10.88106 -10.84081 -10.66806 -10.35796 -10.25213 -10.15392 -9.93318 -9.56719
-9.55519 -9.39983 -9.25817 -9.00434 -8.52344 -8.36321 -6.73580 -5.83797
-3.26828 0.40563 0.97653 2.54893 2.71975 3.13365 3.34071 3.42044
3.43795 3.69515 3.96450 4.22901 4.26829 4.43396 4.44989 4.61681
4.64113 4.78901 4.81326 4.97477 5.09135 5.10414 5.30045 5.35803
5.44404 5.50391 5.56351 5.66813 5.74183 5.85099 5.90086 5.94785
6.00868 6.10752 6.19731 6.28660 6.36798 6.44549 6.58315 6.61246
6.68207 6.75546 6.81487 7.08730 7.46583 7.50943 7.68638 7.72156
7.95997 8.22859 8.33086 9.11229 9.74433 10.32025 11.24551
Molecular weight = 347.17amu
Principal moments of inertia in cm(-1)
A = 0.015917 B = 0.002678 C = 0.002549
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1758.723888 B =10454.124469 C =10983.862765
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.025 3.975
2 O -0.308 6.308
3 C 0.162 3.838
4 C -0.247 4.247
5 C 0.134 3.866
6 N -0.474 5.474
7 C 0.127 3.873
8 C 0.579 3.421
9 O -0.537 6.537
10 N -0.588 5.588
11 C 0.106 3.894
12 C -0.148 4.148
13 C 0.085 3.915
14 C 0.124 3.876
15 C 0.164 3.836
16 N -0.592 5.592
17 C -0.251 4.251
18 H 0.069 0.931
19 C 0.003 3.997
20 N -0.902 5.902
21 Si 0.902 3.098
22 H -0.277 1.277
23 H -0.290 1.290
24 H -0.288 1.288
25 C 0.109 3.891
26 C 0.047 3.953
27 O -0.377 6.377
28 C -0.145 4.145
29 H 0.105 0.895
30 H 0.059 0.941
31 H 0.059 0.941
32 H 0.143 0.857
33 H 0.166 0.834
34 H 0.102 0.898
35 H 0.065 0.935
36 H 0.084 0.916
37 H 0.087 0.913
38 H 0.077 0.923
39 H 0.088 0.912
40 H 0.029 0.971
41 H 0.097 0.903
42 H 0.255 0.745
43 H 0.026 0.974
44 H 0.062 0.938
45 H 0.082 0.918
46 H 0.048 0.952
47 H 0.156 0.844
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -20.883 -7.431 7.785 23.493
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.070 4.070
2 O -0.219 6.219
3 C 0.109 3.891
4 C -0.268 4.268
5 C -0.025 4.025
6 N -0.189 5.189
7 C -0.010 4.010
8 C 0.365 3.635
9 O -0.414 6.414
10 N -0.319 5.319
11 C -0.016 4.016
12 C -0.187 4.187
13 C 0.044 3.956
14 C 0.001 3.999
15 C 0.038 3.962
16 N -0.316 5.316
17 C -0.380 4.380
18 H 0.087 0.913
19 C -0.196 4.196
20 N -0.547 5.547
21 Si 0.732 3.268
22 H -0.202 1.202
23 H -0.217 1.217
24 H -0.215 1.215
25 C -0.017 4.017
26 C -0.031 4.031
27 O -0.296 6.296
28 C -0.167 4.167
29 H 0.123 0.877
30 H 0.078 0.922
31 H 0.078 0.922
32 H 0.160 0.840
33 H 0.183 0.817
34 H 0.119 0.881
35 H 0.084 0.916
36 H 0.102 0.898
37 H 0.105 0.895
38 H 0.096 0.904
39 H 0.106 0.894
40 H 0.047 0.953
41 H 0.115 0.885
42 H 0.065 0.935
43 H 0.044 0.956
44 H 0.081 0.919
45 H 0.100 0.900
46 H 0.067 0.933
47 H 0.173 0.827
Dipole moment (debyes) X Y Z Total
from point charges -19.931 -7.645 7.798 22.727
hybrid contribution -0.872 -0.009 -1.041 1.358
sum -20.803 -7.655 6.757 23.173
Atomic orbital electron populations
1.23172 0.77562 1.04567 1.01724 1.86101 1.22012 1.26001 1.87796
1.19187 0.92077 0.84836 0.93034 1.22399 1.01730 0.93235 1.09400
1.22696 0.89936 0.97222 0.92631 1.67964 1.06914 1.30624 1.13406
1.20942 0.94283 0.88571 0.97211 1.17357 0.85553 0.82497 0.78089
1.90793 1.63343 1.35849 1.51424 1.48370 1.08156 1.05769 1.69624
1.22729 0.96135 0.81149 1.01569 1.23310 0.94620 0.99070 1.01654
1.22708 0.96795 0.91035 0.85093 1.21864 0.80011 0.94806 1.03169
1.21194 0.92269 0.84667 0.98112 1.44068 1.83494 1.03768 1.00265
1.19192 1.38834 0.93214 0.86799 0.91333 1.25039 0.98154 0.97622
0.98803 1.70015 1.40635 1.18590 1.25430 0.86226 0.77587 0.79163
0.83825 1.20244 1.21688 1.21497 1.21594 0.95125 0.97641 0.87385
1.23088 0.98993 0.81287 0.99739 1.87664 1.93187 1.21185 1.27588
1.21373 0.91960 0.99736 1.03594 0.87700 0.92221 0.92198 0.83972
0.81688 0.88054 0.91623 0.89786 0.89488 0.90448 0.89412 0.95266
0.88465 0.93496 0.95614 0.91938 0.89998 0.93341 0.82657
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.11 9.84 101.05 0.99 1.11 16
2 O -0.31 -2.84 10.51 -18.96 -0.20 -3.04 16
3 C 0.16 1.67 6.73 -38.85 -0.26 1.41 16
4 C -0.25 -2.00 9.12 -39.19 -0.36 -2.35 16
5 C 0.13 1.22 11.17 -17.61 -0.20 1.02 16
6 N -0.47 -5.95 6.60 -9.87 -0.07 -6.02 16
7 C 0.13 1.82 6.72 -83.05 -0.56 1.26 16
8 C 0.58 10.02 7.84 -12.17 -0.10 9.92 16
9 O -0.54 -10.58 16.65 5.36 0.09 -10.49 16
10 N -0.59 -10.13 3.33 -171.66 -0.57 -10.71 16
11 C 0.11 1.64 5.94 -2.43 -0.01 1.63 16
12 C -0.15 -2.59 5.93 -24.71 -0.15 -2.74 16
13 C 0.09 1.66 0.84 -89.56 -0.08 1.58 16
14 C 0.12 2.30 6.23 -3.32 -0.02 2.28 16
15 C 0.16 3.84 3.95 -3.85 -0.02 3.83 16
16 N -0.59 -14.38 2.95 -172.17 -0.51 -14.89 16
17 C -0.25 -6.63 9.66 -15.06 -0.15 -6.78 16
18 H 0.07 1.77 7.88 -52.48 -0.41 1.36 16
19 C 0.00 0.07 4.96 -17.43 -0.09 -0.02 16
20 N -0.90 -25.67 11.13 55.49 0.62 -25.05 16
21 Si 0.90 21.21 29.58 -169.99 -5.03 16.18 16
22 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16
23 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16
24 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16
25 C 0.11 2.23 6.72 -3.53 -0.02 2.20 16
26 C 0.05 0.81 6.77 37.30 0.25 1.07 16
27 O -0.38 -7.27 10.22 -35.23 -0.36 -7.63 16
28 C -0.14 -1.85 9.60 -38.89 -0.37 -2.22 16
29 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16
30 H 0.06 0.21 7.71 -51.93 -0.40 -0.20 16
31 H 0.06 0.21 7.71 -51.92 -0.40 -0.19 16
32 H 0.14 0.68 6.45 -52.49 -0.34 0.34 16
33 H 0.17 0.95 8.06 -52.49 -0.42 0.53 16
34 H 0.10 1.46 5.90 -51.93 -0.31 1.15 16
35 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16
36 H 0.08 1.58 7.86 -51.93 -0.41 1.17 16
37 H 0.09 1.49 6.00 -51.93 -0.31 1.18 16
38 H 0.08 1.45 8.06 -51.93 -0.42 1.03 16
39 H 0.09 1.69 7.79 -51.93 -0.40 1.28 16
40 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16
41 H 0.10 2.51 5.99 -51.93 -0.31 2.20 16
42 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16
43 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16
44 H 0.06 1.20 7.96 -51.93 -0.41 0.79 16
45 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16
46 H 0.05 0.81 6.14 -51.93 -0.32 0.50 16
47 H 0.16 2.02 7.64 -52.48 -0.40 1.62 16
LS Contribution 374.47 15.07 5.64 5.64
Total: -1.00 -32.52 374.47 -8.03 -40.54
By element:
Atomic # 1 Polarization: 8.77 SS G_CDS: -6.52 Total: 2.25 kcal
Atomic # 6 Polarization: 14.32 SS G_CDS: -1.12 Total: 13.20 kcal
Atomic # 7 Polarization: -56.13 SS G_CDS: -0.53 Total: -56.66 kcal
Atomic # 8 Polarization: -20.69 SS G_CDS: -0.47 Total: -21.16 kcal
Atomic # 14 Polarization: 21.21 SS G_CDS: -5.03 Total: 16.18 kcal
Total LS contribution 5.64 Total: 5.64 kcal
Total: -32.52 -8.03 -40.54 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000972493347.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 15.596 kcal
(2) G-P(sol) polarization free energy of solvation -32.517 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.921 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.025 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.542 kcal
(6) G-S(sol) free energy of system = (1) + (5) -24.946 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.16 seconds