Wall clock time and date at job start Wed Apr 1 2020 05:21:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35751 * 117.00189 * 2 1 4 4 C 1.39210 * 120.80991 * 0.02562 * 3 2 1 5 5 C 1.38324 * 119.28460 * 179.97438 * 4 3 2 6 6 N 1.31615 * 120.96487 * 359.72817 * 5 4 3 7 7 C 1.32794 * 121.78524 * 0.56429 * 6 5 4 8 8 C 1.48180 * 119.69906 * 179.70654 * 7 6 5 9 9 O 1.21510 * 120.00201 * 179.73057 * 8 7 6 10 10 N 1.34781 * 120.00162 * 359.73001 * 8 7 6 11 11 C 1.47489 * 125.66043 * 0.02562 * 10 8 7 12 12 C 1.55022 * 104.89719 * 204.01005 * 11 10 8 13 13 C 1.54817 * 101.62759 * 323.72370 * 12 11 10 14 14 C 1.47183 * 125.66460 * 179.97438 * 10 8 7 15 15 C 1.52519 * 110.21358 * 152.89748 * 13 12 11 16 16 N 1.47308 * 108.40000 * 72.18554 * 15 13 12 17 17 C 1.36937 * 121.06258 * 229.36345 * 16 15 13 18 18 H 1.08004 * 119.99616 * 153.87299 * 17 16 15 19 19 C 1.38805 * 120.00174 * 333.86714 * 17 16 15 20 20 N 1.31621 * 120.00224 * 343.62925 * 19 17 16 21 21 Si 1.86805 * 119.99996 * 163.62214 * 19 17 16 22 22 H 1.48502 * 109.46885 * 0.02562 * 21 19 17 23 23 H 1.48492 * 109.47095 * 120.00278 * 21 19 17 24 24 H 1.48505 * 109.47148 * 240.00266 * 21 19 17 25 25 C 1.47170 * 117.86739 * 49.38271 * 16 15 13 26 26 C 1.53278 * 108.54959 * 308.86586 * 25 16 15 27 27 O 1.42065 * 110.30827 * 275.97105 * 13 12 11 28 28 C 1.39099 * 120.60243 * 359.43791 * 7 6 5 29 29 H 1.09001 * 109.47647 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47141 * 300.00117 * 1 2 3 31 31 H 1.09008 * 109.47083 * 59.99700 * 1 2 3 32 32 H 1.07998 * 120.36306 * 359.96448 * 4 3 2 33 33 H 1.07997 * 119.51202 * 180.02562 * 5 4 3 34 34 H 1.09004 * 110.35240 * 322.86754 * 11 10 8 35 35 H 1.08999 * 110.35233 * 85.15092 * 11 10 8 36 36 H 1.08992 * 111.01533 * 81.68259 * 12 11 10 37 37 H 1.09001 * 111.00829 * 205.52989 * 12 11 10 38 38 H 1.08997 * 109.91290 * 297.87502 * 14 10 8 39 39 H 1.09005 * 109.90712 * 58.95230 * 14 10 8 40 40 H 1.08994 * 109.67733 * 191.90981 * 15 13 12 41 41 H 1.09003 * 109.67926 * 312.42086 * 15 13 12 42 42 H 0.96997 * 120.00176 * 180.02562 * 20 19 17 43 43 H 1.09000 * 109.62160 * 68.58784 * 25 16 15 44 44 H 1.09000 * 109.61965 * 188.95882 * 25 16 15 45 45 H 1.08998 * 109.50911 * 172.83094 * 26 25 16 46 46 H 1.08997 * 109.51212 * 292.98471 * 26 25 16 47 47 H 1.08003 * 120.50707 * 180.24755 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2095 0.0000 4 6 1.3038 2.3877 0.0005 5 6 1.9644 3.6030 0.0011 6 7 3.2793 3.6589 0.0064 7 6 4.0262 2.5610 0.0004 8 6 5.5034 2.6779 0.0002 9 8 6.1921 1.6768 -0.0003 10 7 6.0831 3.8946 0.0007 11 6 5.3711 5.1863 0.0019 12 6 6.3769 6.1963 -0.6076 13 6 7.7212 5.6794 -0.0396 14 6 7.5317 4.1550 0.0012 15 6 8.8668 6.0528 -0.9747 16 7 9.1016 7.5030 -0.8664 17 6 9.1953 8.2889 -1.9838 18 1 8.9473 9.3386 -1.9280 19 6 9.6091 7.7366 -3.1882 20 7 10.2123 6.5669 -3.2030 21 14 9.3097 8.6534 -4.7880 22 1 8.6194 9.9366 -4.5014 23 1 10.6093 8.9285 -5.4516 24 1 8.4628 7.8242 -5.6827 25 6 9.2326 8.0799 0.4811 26 6 8.0377 7.6230 1.3255 27 8 7.9365 6.1969 1.2658 28 6 3.4345 1.3021 -0.0002 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 0.2243 2.3533 0.0004 33 1 1.3927 4.5192 0.0019 34 1 4.4742 5.1254 -0.6146 35 1 5.1130 5.4760 1.0205 36 1 6.3702 6.1460 -1.6963 37 1 6.1698 7.2098 -0.2638 38 1 7.9816 3.7489 0.9071 39 1 7.9908 3.7006 -0.8769 40 1 9.7679 5.5124 -0.6850 41 1 8.6006 5.7991 -2.0008 42 1 10.5018 6.1811 -4.0446 43 1 10.1587 7.7329 0.9394 44 1 9.2425 9.1678 0.4141 45 1 8.1824 7.9348 2.3598 46 1 7.1236 8.0695 0.9343 47 1 4.0435 0.4101 -0.0010 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972493347.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:59 Heat of formation + Delta-G solvation = -24.946229 kcal Electronic energy + Delta-G solvation = -31240.945850 eV Core-core repulsion = 27005.184226 eV Total energy + Delta-G solvation = -4235.761624 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.13418 -40.02273 -38.94345 -38.04801 -36.07356 -34.43312 -32.17530 -31.88946 -31.29685 -30.90767 -29.39438 -28.10734 -27.42922 -26.00070 -24.16754 -23.69419 -23.39370 -22.32142 -21.33048 -20.06838 -18.85827 -18.17181 -17.61007 -17.10148 -16.48579 -16.34832 -16.09782 -15.76908 -15.49699 -15.27794 -14.82499 -14.77805 -14.36444 -14.20019 -14.13596 -13.87730 -13.50822 -13.38334 -12.98550 -12.75687 -12.68510 -12.52093 -12.21886 -12.08744 -11.98398 -11.68262 -11.29040 -11.07135 -10.88106 -10.84081 -10.66806 -10.35796 -10.25213 -10.15392 -9.93318 -9.56719 -9.55519 -9.39983 -9.25817 -9.00434 -8.52344 -8.36321 -6.73580 -5.83797 -3.26828 0.40563 0.97653 2.54893 2.71975 3.13365 3.34071 3.42044 3.43795 3.69515 3.96450 4.22901 4.26829 4.43396 4.44989 4.61681 4.64113 4.78901 4.81326 4.97477 5.09135 5.10414 5.30045 5.35803 5.44404 5.50391 5.56351 5.66813 5.74183 5.85099 5.90086 5.94785 6.00868 6.10752 6.19731 6.28660 6.36798 6.44549 6.58315 6.61246 6.68207 6.75546 6.81487 7.08730 7.46583 7.50943 7.68638 7.72156 7.95997 8.22859 8.33086 9.11229 9.74433 10.32025 11.24551 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015917 B = 0.002678 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.723888 B =10454.124469 C =10983.862765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.308 6.308 3 C 0.162 3.838 4 C -0.247 4.247 5 C 0.134 3.866 6 N -0.474 5.474 7 C 0.127 3.873 8 C 0.579 3.421 9 O -0.537 6.537 10 N -0.588 5.588 11 C 0.106 3.894 12 C -0.148 4.148 13 C 0.085 3.915 14 C 0.124 3.876 15 C 0.164 3.836 16 N -0.592 5.592 17 C -0.251 4.251 18 H 0.069 0.931 19 C 0.003 3.997 20 N -0.902 5.902 21 Si 0.902 3.098 22 H -0.277 1.277 23 H -0.290 1.290 24 H -0.288 1.288 25 C 0.109 3.891 26 C 0.047 3.953 27 O -0.377 6.377 28 C -0.145 4.145 29 H 0.105 0.895 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.143 0.857 33 H 0.166 0.834 34 H 0.102 0.898 35 H 0.065 0.935 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.077 0.923 39 H 0.088 0.912 40 H 0.029 0.971 41 H 0.097 0.903 42 H 0.255 0.745 43 H 0.026 0.974 44 H 0.062 0.938 45 H 0.082 0.918 46 H 0.048 0.952 47 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.883 -7.431 7.785 23.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.219 6.219 3 C 0.109 3.891 4 C -0.268 4.268 5 C -0.025 4.025 6 N -0.189 5.189 7 C -0.010 4.010 8 C 0.365 3.635 9 O -0.414 6.414 10 N -0.319 5.319 11 C -0.016 4.016 12 C -0.187 4.187 13 C 0.044 3.956 14 C 0.001 3.999 15 C 0.038 3.962 16 N -0.316 5.316 17 C -0.380 4.380 18 H 0.087 0.913 19 C -0.196 4.196 20 N -0.547 5.547 21 Si 0.732 3.268 22 H -0.202 1.202 23 H -0.217 1.217 24 H -0.215 1.215 25 C -0.017 4.017 26 C -0.031 4.031 27 O -0.296 6.296 28 C -0.167 4.167 29 H 0.123 0.877 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.160 0.840 33 H 0.183 0.817 34 H 0.119 0.881 35 H 0.084 0.916 36 H 0.102 0.898 37 H 0.105 0.895 38 H 0.096 0.904 39 H 0.106 0.894 40 H 0.047 0.953 41 H 0.115 0.885 42 H 0.065 0.935 43 H 0.044 0.956 44 H 0.081 0.919 45 H 0.100 0.900 46 H 0.067 0.933 47 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -19.931 -7.645 7.798 22.727 hybrid contribution -0.872 -0.009 -1.041 1.358 sum -20.803 -7.655 6.757 23.173 Atomic orbital electron populations 1.23172 0.77562 1.04567 1.01724 1.86101 1.22012 1.26001 1.87796 1.19187 0.92077 0.84836 0.93034 1.22399 1.01730 0.93235 1.09400 1.22696 0.89936 0.97222 0.92631 1.67964 1.06914 1.30624 1.13406 1.20942 0.94283 0.88571 0.97211 1.17357 0.85553 0.82497 0.78089 1.90793 1.63343 1.35849 1.51424 1.48370 1.08156 1.05769 1.69624 1.22729 0.96135 0.81149 1.01569 1.23310 0.94620 0.99070 1.01654 1.22708 0.96795 0.91035 0.85093 1.21864 0.80011 0.94806 1.03169 1.21194 0.92269 0.84667 0.98112 1.44068 1.83494 1.03768 1.00265 1.19192 1.38834 0.93214 0.86799 0.91333 1.25039 0.98154 0.97622 0.98803 1.70015 1.40635 1.18590 1.25430 0.86226 0.77587 0.79163 0.83825 1.20244 1.21688 1.21497 1.21594 0.95125 0.97641 0.87385 1.23088 0.98993 0.81287 0.99739 1.87664 1.93187 1.21185 1.27588 1.21373 0.91960 0.99736 1.03594 0.87700 0.92221 0.92198 0.83972 0.81688 0.88054 0.91623 0.89786 0.89488 0.90448 0.89412 0.95266 0.88465 0.93496 0.95614 0.91938 0.89998 0.93341 0.82657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.84 101.05 0.99 1.11 16 2 O -0.31 -2.84 10.51 -18.96 -0.20 -3.04 16 3 C 0.16 1.67 6.73 -38.85 -0.26 1.41 16 4 C -0.25 -2.00 9.12 -39.19 -0.36 -2.35 16 5 C 0.13 1.22 11.17 -17.61 -0.20 1.02 16 6 N -0.47 -5.95 6.60 -9.87 -0.07 -6.02 16 7 C 0.13 1.82 6.72 -83.05 -0.56 1.26 16 8 C 0.58 10.02 7.84 -12.17 -0.10 9.92 16 9 O -0.54 -10.58 16.65 5.36 0.09 -10.49 16 10 N -0.59 -10.13 3.33 -171.66 -0.57 -10.71 16 11 C 0.11 1.64 5.94 -2.43 -0.01 1.63 16 12 C -0.15 -2.59 5.93 -24.71 -0.15 -2.74 16 13 C 0.09 1.66 0.84 -89.56 -0.08 1.58 16 14 C 0.12 2.30 6.23 -3.32 -0.02 2.28 16 15 C 0.16 3.84 3.95 -3.85 -0.02 3.83 16 16 N -0.59 -14.38 2.95 -172.17 -0.51 -14.89 16 17 C -0.25 -6.63 9.66 -15.06 -0.15 -6.78 16 18 H 0.07 1.77 7.88 -52.48 -0.41 1.36 16 19 C 0.00 0.07 4.96 -17.43 -0.09 -0.02 16 20 N -0.90 -25.67 11.13 55.49 0.62 -25.05 16 21 Si 0.90 21.21 29.58 -169.99 -5.03 16.18 16 22 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 24 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 25 C 0.11 2.23 6.72 -3.53 -0.02 2.20 16 26 C 0.05 0.81 6.77 37.30 0.25 1.07 16 27 O -0.38 -7.27 10.22 -35.23 -0.36 -7.63 16 28 C -0.14 -1.85 9.60 -38.89 -0.37 -2.22 16 29 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.21 7.71 -51.93 -0.40 -0.20 16 31 H 0.06 0.21 7.71 -51.92 -0.40 -0.19 16 32 H 0.14 0.68 6.45 -52.49 -0.34 0.34 16 33 H 0.17 0.95 8.06 -52.49 -0.42 0.53 16 34 H 0.10 1.46 5.90 -51.93 -0.31 1.15 16 35 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.08 1.58 7.86 -51.93 -0.41 1.17 16 37 H 0.09 1.49 6.00 -51.93 -0.31 1.18 16 38 H 0.08 1.45 8.06 -51.93 -0.42 1.03 16 39 H 0.09 1.69 7.79 -51.93 -0.40 1.28 16 40 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.10 2.51 5.99 -51.93 -0.31 2.20 16 42 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 43 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.06 1.20 7.96 -51.93 -0.41 0.79 16 45 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 46 H 0.05 0.81 6.14 -51.93 -0.32 0.50 16 47 H 0.16 2.02 7.64 -52.48 -0.40 1.62 16 LS Contribution 374.47 15.07 5.64 5.64 Total: -1.00 -32.52 374.47 -8.03 -40.54 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -6.52 Total: 2.25 kcal Atomic # 6 Polarization: 14.32 SS G_CDS: -1.12 Total: 13.20 kcal Atomic # 7 Polarization: -56.13 SS G_CDS: -0.53 Total: -56.66 kcal Atomic # 8 Polarization: -20.69 SS G_CDS: -0.47 Total: -21.16 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.03 Total: 16.18 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.52 -8.03 -40.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972493347.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.596 kcal (2) G-P(sol) polarization free energy of solvation -32.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds