Wall clock time and date at job start Wed Apr 1 2020 05:21:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35751 * 117.00189 * 2 1 4 4 C 1.39210 * 120.80991 * 0.02562 * 3 2 1 5 5 C 1.38324 * 119.28460 * 179.97438 * 4 3 2 6 6 N 1.31615 * 120.96487 * 359.72817 * 5 4 3 7 7 C 1.32794 * 121.78524 * 0.56429 * 6 5 4 8 8 C 1.48180 * 119.69906 * 179.70654 * 7 6 5 9 9 O 1.21510 * 120.00201 * 179.73057 * 8 7 6 10 10 N 1.34781 * 120.00162 * 359.73001 * 8 7 6 11 11 C 1.47489 * 125.66043 * 0.02562 * 10 8 7 12 12 C 1.55022 * 104.89719 * 204.01005 * 11 10 8 13 13 C 1.54817 * 101.62759 * 323.72370 * 12 11 10 14 14 C 1.47183 * 125.66460 * 179.97438 * 10 8 7 15 15 C 1.52519 * 110.21358 * 152.89748 * 13 12 11 16 16 N 1.47308 * 108.40000 * 72.18554 * 15 13 12 17 17 C 1.36937 * 121.06258 * 229.36345 * 16 15 13 18 18 H 1.08004 * 119.99616 * 153.87299 * 17 16 15 19 19 C 1.38805 * 120.00174 * 333.86714 * 17 16 15 20 20 N 1.31621 * 120.00224 * 343.62925 * 19 17 16 21 21 Si 1.86805 * 119.99996 * 163.62214 * 19 17 16 22 22 H 1.48502 * 109.46885 * 0.02562 * 21 19 17 23 23 H 1.48492 * 109.47095 * 120.00278 * 21 19 17 24 24 H 1.48505 * 109.47148 * 240.00266 * 21 19 17 25 25 C 1.47170 * 117.86739 * 49.38271 * 16 15 13 26 26 C 1.53278 * 108.54959 * 308.86586 * 25 16 15 27 27 O 1.42065 * 110.30827 * 275.97105 * 13 12 11 28 28 C 1.39099 * 120.60243 * 359.43791 * 7 6 5 29 29 H 1.09001 * 109.47647 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47141 * 300.00117 * 1 2 3 31 31 H 1.09008 * 109.47083 * 59.99700 * 1 2 3 32 32 H 1.07998 * 120.36306 * 359.96448 * 4 3 2 33 33 H 1.07997 * 119.51202 * 180.02562 * 5 4 3 34 34 H 1.09004 * 110.35240 * 322.86754 * 11 10 8 35 35 H 1.08999 * 110.35233 * 85.15092 * 11 10 8 36 36 H 1.08992 * 111.01533 * 81.68259 * 12 11 10 37 37 H 1.09001 * 111.00829 * 205.52989 * 12 11 10 38 38 H 1.08997 * 109.91290 * 297.87502 * 14 10 8 39 39 H 1.09005 * 109.90712 * 58.95230 * 14 10 8 40 40 H 1.08994 * 109.67733 * 191.90981 * 15 13 12 41 41 H 1.09003 * 109.67926 * 312.42086 * 15 13 12 42 42 H 0.96997 * 120.00176 * 180.02562 * 20 19 17 43 43 H 1.09000 * 109.62160 * 68.58784 * 25 16 15 44 44 H 1.09000 * 109.61965 * 188.95882 * 25 16 15 45 45 H 1.08998 * 109.50911 * 172.83094 * 26 25 16 46 46 H 1.08997 * 109.51212 * 292.98471 * 26 25 16 47 47 H 1.08003 * 120.50707 * 180.24755 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2095 0.0000 4 6 1.3038 2.3877 0.0005 5 6 1.9644 3.6030 0.0011 6 7 3.2793 3.6589 0.0064 7 6 4.0262 2.5610 0.0004 8 6 5.5034 2.6779 0.0002 9 8 6.1921 1.6768 -0.0003 10 7 6.0831 3.8946 0.0007 11 6 5.3711 5.1863 0.0019 12 6 6.3769 6.1963 -0.6076 13 6 7.7212 5.6794 -0.0396 14 6 7.5317 4.1550 0.0012 15 6 8.8668 6.0528 -0.9747 16 7 9.1016 7.5030 -0.8664 17 6 9.1953 8.2889 -1.9838 18 1 8.9473 9.3386 -1.9280 19 6 9.6091 7.7366 -3.1882 20 7 10.2123 6.5669 -3.2030 21 14 9.3097 8.6534 -4.7880 22 1 8.6194 9.9366 -4.5014 23 1 10.6093 8.9285 -5.4516 24 1 8.4628 7.8242 -5.6827 25 6 9.2326 8.0799 0.4811 26 6 8.0377 7.6230 1.3255 27 8 7.9365 6.1969 1.2658 28 6 3.4345 1.3021 -0.0002 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 0.2243 2.3533 0.0004 33 1 1.3927 4.5192 0.0019 34 1 4.4742 5.1254 -0.6146 35 1 5.1130 5.4760 1.0205 36 1 6.3702 6.1460 -1.6963 37 1 6.1698 7.2098 -0.2638 38 1 7.9816 3.7489 0.9071 39 1 7.9908 3.7006 -0.8769 40 1 9.7679 5.5124 -0.6850 41 1 8.6006 5.7991 -2.0008 42 1 10.5018 6.1811 -4.0446 43 1 10.1587 7.7329 0.9394 44 1 9.2425 9.1678 0.4141 45 1 8.1824 7.9348 2.3598 46 1 7.1236 8.0695 0.9343 47 1 4.0435 0.4101 -0.0010 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972493347.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:58 Heat of formation + Delta-G solvation = -47.195639 kcal Electronic energy + Delta-G solvation = -31241.910657 eV Core-core repulsion = 27005.184226 eV Total energy + Delta-G solvation = -4236.726431 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.08861 -41.30201 -40.15772 -39.00975 -37.57200 -36.25438 -33.37297 -33.16859 -32.72587 -32.11031 -30.85530 -29.12704 -28.57498 -27.62078 -25.54378 -24.93210 -24.47217 -23.62606 -22.94626 -21.17716 -20.43047 -19.23235 -18.95567 -18.50652 -17.64623 -17.37758 -17.01772 -16.92206 -16.79379 -16.53059 -16.26891 -16.08787 -15.76231 -15.56096 -15.28611 -15.16491 -14.81388 -14.65576 -14.53923 -14.23661 -14.04017 -13.63327 -13.59230 -13.30731 -13.08938 -12.83612 -12.64360 -12.54364 -12.46640 -12.31899 -12.29046 -12.09947 -11.86327 -11.80032 -11.50313 -11.13907 -10.76712 -10.53676 -10.41869 -10.37294 -9.99809 -9.73581 -8.71518 -7.88301 -5.34740 -0.49844 0.20046 1.46427 1.48744 1.58593 1.58897 1.61521 2.19054 2.48888 2.73734 2.78316 2.96771 3.24921 3.41769 3.58025 3.63870 3.72353 3.87322 3.95257 4.00586 4.09858 4.28054 4.33896 4.36005 4.39534 4.40032 4.47774 4.52995 4.55017 4.66617 4.70494 4.76428 4.80310 4.90481 4.92481 4.97022 5.04866 5.10413 5.15175 5.20804 5.28415 5.44385 5.51747 5.63532 6.14295 6.30672 6.31844 6.42351 6.64355 6.95743 7.07541 7.76869 8.31822 9.18202 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015917 B = 0.002678 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.723888 B =10454.124469 C =10983.862765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.328 6.328 3 C 0.160 3.840 4 C -0.223 4.223 5 C 0.135 3.865 6 N -0.490 5.490 7 C 0.106 3.894 8 C 0.573 3.427 9 O -0.575 6.575 10 N -0.592 5.592 11 C 0.121 3.879 12 C -0.140 4.140 13 C 0.096 3.904 14 C 0.127 3.873 15 C 0.176 3.824 16 N -0.608 5.608 17 C -0.254 4.254 18 H 0.077 0.923 19 C -0.052 4.052 20 N -0.939 5.939 21 Si 0.967 3.033 22 H -0.261 1.261 23 H -0.296 1.296 24 H -0.292 1.292 25 C 0.103 3.897 26 C 0.052 3.948 27 O -0.383 6.383 28 C -0.161 4.161 29 H 0.120 0.880 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.185 0.815 33 H 0.207 0.793 34 H 0.118 0.882 35 H 0.078 0.922 36 H 0.066 0.934 37 H 0.098 0.902 38 H 0.072 0.928 39 H 0.069 0.931 40 H -0.008 1.008 41 H 0.067 0.933 42 H 0.249 0.751 43 H 0.013 0.987 44 H 0.076 0.924 45 H 0.120 0.880 46 H 0.063 0.937 47 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.264 -5.811 8.724 27.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.239 6.239 3 C 0.107 3.893 4 C -0.243 4.243 5 C -0.023 4.023 6 N -0.206 5.206 7 C -0.030 4.030 8 C 0.362 3.638 9 O -0.455 6.455 10 N -0.322 5.322 11 C 0.000 4.000 12 C -0.178 4.178 13 C 0.054 3.946 14 C 0.004 3.996 15 C 0.049 3.951 16 N -0.332 5.332 17 C -0.383 4.383 18 H 0.095 0.905 19 C -0.248 4.248 20 N -0.585 5.585 21 Si 0.795 3.205 22 H -0.184 1.184 23 H -0.224 1.224 24 H -0.219 1.219 25 C -0.023 4.023 26 C -0.025 4.025 27 O -0.302 6.302 28 C -0.183 4.183 29 H 0.138 0.862 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.202 0.798 33 H 0.224 0.776 34 H 0.136 0.864 35 H 0.096 0.904 36 H 0.085 0.915 37 H 0.116 0.884 38 H 0.090 0.910 39 H 0.087 0.913 40 H 0.010 0.990 41 H 0.086 0.914 42 H 0.058 0.942 43 H 0.031 0.969 44 H 0.095 0.905 45 H 0.138 0.862 46 H 0.081 0.919 47 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -24.347 -5.996 8.770 26.564 hybrid contribution 0.411 -0.547 -1.275 1.446 sum -23.937 -6.543 7.495 25.922 Atomic orbital electron populations 1.23553 0.74976 1.06322 1.03275 1.86093 1.24656 1.25656 1.87489 1.19213 0.91244 0.86251 0.92640 1.22824 1.03638 0.91686 1.06170 1.23408 0.88732 0.99254 0.90917 1.67834 1.08682 1.29817 1.14245 1.20384 0.92394 0.89811 1.00417 1.17963 0.87194 0.81756 0.76908 1.90752 1.64732 1.36946 1.53031 1.48430 1.07347 1.06682 1.69790 1.22742 0.95598 0.79349 1.02342 1.23213 0.93750 1.00250 1.00571 1.22337 0.96151 0.91475 0.84593 1.21638 0.81493 0.94363 1.02080 1.20886 0.92331 0.84425 0.97430 1.44325 1.83637 1.03774 1.01475 1.19555 1.37486 0.93717 0.87577 0.90516 1.25810 0.98524 0.98524 1.01896 1.70189 1.42357 1.20360 1.25609 0.85214 0.76951 0.78517 0.79835 1.18447 1.22352 1.21902 1.21814 0.96215 0.98404 0.85844 1.23201 0.97895 0.80084 1.01298 1.87671 1.93139 1.22534 1.26837 1.21297 0.93579 0.98666 1.04757 0.86153 0.90480 0.90619 0.79763 0.77641 0.86408 0.90359 0.91548 0.88355 0.90989 0.91288 0.98971 0.91442 0.94181 0.96872 0.90513 0.86225 0.91883 0.84397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.07 9.84 113.37 1.12 1.18 16 2 O -0.33 -5.38 10.51 -90.76 -0.95 -6.33 16 3 C 0.16 2.99 6.73 22.74 0.15 3.14 16 4 C -0.22 -2.65 9.12 22.52 0.21 -2.45 16 5 C 0.14 1.90 11.17 84.75 0.95 2.85 16 6 N -0.49 -11.24 6.60 -185.14 -1.22 -12.46 16 7 C 0.11 3.02 6.72 41.85 0.28 3.31 16 8 C 0.57 20.66 7.84 86.88 0.68 21.34 16 9 O -0.57 -24.22 16.65 -3.75 -0.06 -24.28 16 10 N -0.59 -20.87 3.33 -815.30 -2.72 -23.59 16 11 C 0.12 3.59 5.94 86.88 0.52 4.10 16 12 C -0.14 -4.80 5.93 31.91 0.19 -4.61 16 13 C 0.10 3.81 0.84 -10.11 -0.01 3.80 16 14 C 0.13 5.00 6.23 86.47 0.54 5.54 16 15 C 0.18 8.67 3.95 86.07 0.34 9.01 16 16 N -0.61 -29.98 2.95 -698.63 -2.06 -32.04 16 17 C -0.25 -13.47 9.66 84.03 0.81 -12.66 16 18 H 0.08 3.89 7.88 -2.91 -0.02 3.87 16 19 C -0.05 -2.89 4.96 84.86 0.42 -2.47 16 20 N -0.94 -55.81 11.13 21.65 0.24 -55.57 16 21 Si 0.97 44.23 29.58 68.60 2.03 46.26 16 22 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 23 H -0.30 -13.76 7.11 99.48 0.71 -13.05 16 24 H -0.29 -13.43 7.11 99.48 0.71 -12.73 16 25 C 0.10 4.12 6.72 86.34 0.58 4.70 16 26 C 0.05 1.70 6.77 72.08 0.49 2.19 16 27 O -0.38 -14.43 10.22 -148.97 -1.52 -15.95 16 28 C -0.16 -4.15 9.60 22.72 0.22 -3.93 16 29 H 0.12 0.31 8.14 -2.39 -0.02 0.29 16 30 H 0.08 0.19 7.71 -2.39 -0.02 0.17 16 31 H 0.08 0.21 7.71 -2.38 -0.02 0.19 16 32 H 0.19 0.61 6.45 -2.91 -0.02 0.59 16 33 H 0.21 1.15 8.06 -2.91 -0.02 1.12 16 34 H 0.12 3.16 5.90 -2.38 -0.01 3.14 16 35 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 36 H 0.07 2.52 7.86 -2.39 -0.02 2.50 16 37 H 0.10 3.15 6.00 -2.39 -0.01 3.14 16 38 H 0.07 2.86 8.06 -2.39 -0.02 2.84 16 39 H 0.07 2.92 7.79 -2.38 -0.02 2.90 16 40 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 41 H 0.07 3.72 5.99 -2.39 -0.01 3.71 16 42 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 43 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 44 H 0.08 2.83 7.96 -2.39 -0.02 2.81 16 45 H 0.12 3.04 8.14 -2.39 -0.02 3.02 16 46 H 0.06 1.90 6.14 -2.39 -0.01 1.89 16 47 H 0.14 3.89 7.64 -2.91 -0.02 3.87 16 Total: -1.00 -75.31 374.47 2.20 -73.11 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: 1.00 Total: 15.81 kcal Atomic # 6 Polarization: 27.58 SS G_CDS: 7.48 Total: 35.05 kcal Atomic # 7 Polarization: -117.90 SS G_CDS: -5.76 Total: -123.66 kcal Atomic # 8 Polarization: -44.03 SS G_CDS: -2.54 Total: -46.57 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Total: -75.31 2.20 -73.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972493347.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.912 kcal (2) G-P(sol) polarization free energy of solvation -75.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds