Wall clock time and date at job start Wed Apr 1 2020 05:16:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35671 * 116.99542 * 2 1 4 4 C 1.39291 * 119.61705 * 179.97438 * 3 2 1 5 5 C 1.38330 * 119.30647 * 180.02562 * 4 3 2 6 6 C 1.38787 * 118.55879 * 0.02562 * 5 4 3 7 7 C 1.39124 * 119.18611 * 359.97438 * 6 5 4 8 8 C 1.48152 * 119.68892 * 179.97438 * 7 6 5 9 9 O 1.21524 * 119.99612 * 0.02562 * 8 7 6 10 10 N 1.34778 * 120.00385 * 179.97438 * 8 7 6 11 11 C 1.47482 * 125.65855 * 359.96196 * 10 8 7 12 12 C 1.55015 * 104.89625 * 204.04645 * 11 10 8 13 13 C 1.54518 * 101.53091 * 323.62902 * 12 11 10 14 14 C 1.47181 * 125.66269 * 180.02562 * 10 8 7 15 15 C 1.52102 * 109.89861 * 153.09913 * 13 12 11 16 16 N 1.47313 * 108.61081 * 72.26034 * 15 13 12 17 17 C 1.36940 * 121.06643 * 229.35543 * 16 15 13 18 18 H 1.07997 * 119.99705 * 154.08711 * 17 16 15 19 19 C 1.38812 * 119.99608 * 334.09084 * 17 16 15 20 20 N 1.31618 * 120.00341 * 343.38136 * 19 17 16 21 21 Si 1.86799 * 119.99590 * 163.38314 * 19 17 16 22 22 H 1.48498 * 109.47212 * 269.99635 * 21 19 17 23 23 H 1.48505 * 109.47309 * 29.99829 * 21 19 17 24 24 H 1.48500 * 109.47268 * 149.99599 * 21 19 17 25 25 C 1.47160 * 117.86659 * 49.08254 * 16 15 13 26 26 C 1.53277 * 108.55668 * 309.12794 * 25 16 15 27 27 O 1.42070 * 110.33007 * 276.06583 * 13 12 11 28 28 N 1.31897 * 119.61743 * 0.29847 * 3 2 1 29 29 H 1.09002 * 109.47159 * 60.00205 * 1 2 3 30 30 H 1.09002 * 109.46675 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47423 * 299.99639 * 1 2 3 32 32 H 1.07996 * 120.34538 * 0.04525 * 4 3 2 33 33 H 1.07996 * 120.71745 * 180.02562 * 5 4 3 34 34 H 1.07994 * 120.40443 * 180.02562 * 6 5 4 35 35 H 1.08997 * 110.35754 * 322.90235 * 11 10 8 36 36 H 1.09000 * 110.35321 * 85.19099 * 11 10 8 37 37 H 1.09007 * 111.01646 * 205.56553 * 12 11 10 38 38 H 1.09003 * 111.01499 * 81.68872 * 12 11 10 39 39 H 1.08996 * 109.91621 * 59.09572 * 14 10 8 40 40 H 1.09006 * 109.90809 * 297.82777 * 14 10 8 41 41 H 1.08999 * 109.62515 * 312.43720 * 15 13 12 42 42 H 1.09002 * 109.52344 * 192.01823 * 15 13 12 43 43 H 0.96995 * 119.99879 * 180.02562 * 20 19 17 44 44 H 1.08996 * 109.62888 * 68.84642 * 25 16 15 45 45 H 1.09008 * 109.62596 * 189.41180 * 25 16 15 46 46 H 1.09001 * 109.51316 * 172.82040 * 26 25 16 47 47 H 1.09004 * 109.50995 * 292.96466 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2089 0.0000 4 6 3.4363 1.2726 0.0005 5 6 4.0575 2.5086 0.0011 6 6 3.2663 3.6488 0.0016 7 6 1.8816 3.5138 0.0010 8 6 1.0264 4.7235 0.0022 9 8 1.5350 5.8272 0.0031 10 7 -0.3158 4.6000 0.0011 11 6 -1.0621 3.3280 -0.0020 12 6 -2.4434 3.6779 -0.6125 13 6 -2.6851 5.0923 -0.0392 14 6 -1.2798 5.7122 0.0015 15 6 -3.5919 5.8809 -0.9716 16 7 -4.9587 5.3419 -0.8652 17 6 -5.6808 5.0208 -1.9835 18 1 -6.4589 4.2739 -1.9279 19 6 -5.4126 5.6552 -3.1887 20 7 -4.7157 6.7717 -3.2039 21 14 -6.0408 4.9245 -4.7889 22 1 -5.0252 3.9913 -5.3393 23 1 -7.3042 4.1868 -4.5340 24 1 -6.2924 6.0144 -5.7657 25 6 -5.5210 5.1538 0.4817 26 6 -4.5150 4.3614 1.3240 27 8 -3.2395 5.0076 1.2661 28 7 1.3190 2.3102 0.0060 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 4.0239 0.3665 0.0002 33 1 5.1348 2.5845 0.0011 34 1 3.7199 4.6288 0.0016 35 1 -0.5507 2.5898 -0.6196 36 1 -1.1807 2.9556 1.0155 37 1 -3.2094 2.9816 -0.2712 38 1 -2.3951 3.7006 -1.7013 39 1 -1.1246 6.3384 -0.8771 40 1 -1.1620 6.3052 0.9085 41 1 -3.2372 5.7818 -1.9975 42 1 -3.5880 6.9314 -0.6812 43 1 -4.5286 7.2152 -4.0459 44 1 -5.6996 6.1251 0.9428 45 1 -6.4576 4.6002 0.4135 46 1 -4.8569 4.3225 2.3583 47 1 -4.4283 3.3487 0.9302 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972620777.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:16:11 Heat of formation + Delta-G solvation = -24.232489 kcal Electronic energy + Delta-G solvation = -31971.289284 eV Core-core repulsion = 27735.558610 eV Total energy + Delta-G solvation = -4235.730674 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.14132 -39.99657 -38.85233 -37.75086 -36.12795 -34.48134 -33.08164 -31.48879 -31.25628 -30.90263 -29.50414 -27.65416 -27.47796 -26.07493 -24.40454 -23.51674 -23.12082 -22.47688 -21.41946 -20.12182 -18.88372 -18.13750 -17.67905 -17.13961 -16.38493 -16.32086 -16.15110 -15.90263 -15.47874 -15.24823 -14.88310 -14.40073 -14.37736 -14.26602 -13.91589 -13.68500 -13.42581 -13.42133 -12.82035 -12.77537 -12.70557 -12.45704 -12.20774 -12.14927 -11.94629 -11.40194 -11.34437 -11.10970 -10.94839 -10.87436 -10.73351 -10.50805 -10.29333 -10.26759 -10.20236 -9.97418 -9.61154 -9.44343 -9.06378 -8.86937 -8.55841 -8.39733 -6.78232 -5.87235 -3.30222 0.44439 0.98528 2.70722 2.78575 2.96854 3.31874 3.38971 3.40649 3.67247 3.84497 4.20470 4.39969 4.50415 4.67953 4.72555 4.92462 4.98650 5.02817 5.07920 5.13051 5.18397 5.31605 5.42031 5.45940 5.50001 5.64957 5.66182 5.78518 5.83542 5.84408 5.93220 5.99893 6.04219 6.11190 6.17467 6.30206 6.37437 6.48178 6.52675 6.62132 6.76655 6.91988 7.04004 7.38307 7.42084 7.61916 7.68286 7.90176 8.17400 8.29152 9.07532 9.70759 10.28020 11.21179 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.012874 B = 0.003238 C = 0.003158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2174.439474 B = 8644.555908 C = 8864.772967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.307 6.307 3 C 0.317 3.683 4 C -0.171 4.171 5 C -0.047 4.047 6 C -0.149 4.149 7 C 0.130 3.870 8 C 0.578 3.422 9 O -0.536 6.536 10 N -0.589 5.589 11 C 0.105 3.895 12 C -0.149 4.149 13 C 0.086 3.914 14 C 0.124 3.876 15 C 0.163 3.837 16 N -0.592 5.592 17 C -0.254 4.254 18 H 0.069 0.931 19 C 0.004 3.996 20 N -0.902 5.902 21 Si 0.903 3.097 22 H -0.287 1.287 23 H -0.279 1.279 24 H -0.290 1.290 25 C 0.109 3.891 26 C 0.046 3.954 27 O -0.377 6.377 28 N -0.510 5.510 29 H 0.063 0.937 30 H 0.098 0.902 31 H 0.062 0.938 32 H 0.145 0.855 33 H 0.149 0.851 34 H 0.151 0.849 35 H 0.098 0.902 36 H 0.064 0.936 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.078 0.922 41 H 0.097 0.903 42 H 0.029 0.971 43 H 0.256 0.744 44 H 0.027 0.973 45 H 0.062 0.938 46 H 0.082 0.918 47 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.838 -12.534 7.750 20.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.213 6.213 3 C 0.136 3.864 4 C -0.192 4.192 5 C -0.073 4.073 6 C -0.171 4.171 7 C -0.007 4.007 8 C 0.365 3.635 9 O -0.413 6.413 10 N -0.321 5.321 11 C -0.017 4.017 12 C -0.187 4.187 13 C 0.044 3.956 14 C 0.002 3.998 15 C 0.037 3.963 16 N -0.316 5.316 17 C -0.383 4.383 18 H 0.087 0.913 19 C -0.195 4.195 20 N -0.546 5.546 21 Si 0.733 3.267 22 H -0.214 1.214 23 H -0.204 1.204 24 H -0.217 1.217 25 C -0.017 4.017 26 C -0.032 4.032 27 O -0.296 6.296 28 N -0.237 5.237 29 H 0.082 0.918 30 H 0.116 0.884 31 H 0.081 0.919 32 H 0.163 0.837 33 H 0.167 0.833 34 H 0.169 0.831 35 H 0.115 0.885 36 H 0.082 0.918 37 H 0.105 0.895 38 H 0.103 0.897 39 H 0.107 0.893 40 H 0.096 0.904 41 H 0.115 0.885 42 H 0.047 0.953 43 H 0.066 0.934 44 H 0.045 0.955 45 H 0.081 0.919 46 H 0.100 0.900 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 13.444 -12.065 7.762 19.661 hybrid contribution 0.026 -0.330 -1.036 1.087 sum 13.470 -12.395 6.726 19.501 Atomic orbital electron populations 1.23040 0.76728 1.03392 1.02914 1.86244 1.23273 1.24026 1.87791 1.19901 0.89456 0.84689 0.92371 1.21282 0.92008 0.99846 1.06019 1.21440 1.00868 0.90785 0.94167 1.21980 0.92896 1.00934 1.01252 1.20789 0.92101 0.90142 0.97642 1.17458 0.80777 0.87370 0.77943 1.90795 1.73181 1.25879 1.51448 1.48383 1.04316 1.09565 1.69789 1.22758 0.91703 0.85951 1.01276 1.23285 0.95646 0.98140 1.01674 1.22554 0.92384 0.95524 0.85121 1.21874 0.85786 0.88970 1.03203 1.21118 0.83355 0.93698 0.98130 1.44049 1.11336 1.75943 1.00261 1.19166 1.16369 1.16014 0.86718 0.91327 1.25026 1.00326 0.95391 0.98755 1.70008 1.43301 1.15780 1.25522 0.86281 0.78585 0.78278 0.83578 1.21398 1.20412 1.21673 1.21589 0.95250 0.97504 0.87370 1.23105 0.84389 0.95857 0.99811 1.87672 1.34472 1.79953 1.27517 1.67533 1.39943 0.98272 1.17904 0.91839 0.88353 0.91891 0.83695 0.83318 0.83084 0.88463 0.91808 0.89463 0.89715 0.89346 0.90385 0.88451 0.95290 0.93422 0.95539 0.91919 0.89952 0.93403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.03 101.05 1.01 1.32 16 2 O -0.31 -3.27 10.48 -18.71 -0.20 -3.46 16 3 C 0.32 3.60 7.49 -17.13 -0.13 3.48 16 4 C -0.17 -1.52 10.05 -39.16 -0.39 -1.91 16 5 C -0.05 -0.39 10.16 -39.34 -0.40 -0.79 16 6 C -0.15 -1.66 9.63 -39.05 -0.38 -2.04 16 7 C 0.13 1.81 6.72 -83.02 -0.56 1.25 16 8 C 0.58 9.73 7.84 -12.19 -0.10 9.63 16 9 O -0.54 -10.20 16.64 5.34 0.09 -10.11 16 10 N -0.59 -9.95 3.33 -171.69 -0.57 -10.52 16 11 C 0.11 1.59 5.93 -2.44 -0.01 1.57 16 12 C -0.15 -2.55 5.90 -24.87 -0.15 -2.69 16 13 C 0.09 1.63 0.83 -89.94 -0.07 1.56 16 14 C 0.12 2.26 6.24 -3.33 -0.02 2.24 16 15 C 0.16 3.77 3.91 -4.06 -0.02 3.76 16 16 N -0.59 -14.20 2.95 -172.42 -0.51 -14.71 16 17 C -0.25 -6.62 9.66 -15.06 -0.15 -6.77 16 18 H 0.07 1.75 7.88 -52.49 -0.41 1.34 16 19 C 0.00 0.11 4.96 -17.43 -0.09 0.02 16 20 N -0.90 -25.40 11.13 55.49 0.62 -24.78 16 21 Si 0.90 21.02 29.58 -169.99 -5.03 15.99 16 22 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 23 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 25 C 0.11 2.20 6.72 -3.54 -0.02 2.18 16 26 C 0.05 0.79 6.76 37.30 0.25 1.04 16 27 O -0.38 -7.14 10.23 -35.23 -0.36 -7.50 16 28 N -0.51 -6.64 5.50 -9.87 -0.05 -6.69 16 29 H 0.06 0.60 7.15 -51.93 -0.37 0.23 16 30 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.58 8.10 -51.93 -0.42 0.16 16 32 H 0.15 0.93 8.06 -52.49 -0.42 0.50 16 33 H 0.15 0.70 8.06 -52.49 -0.42 0.27 16 34 H 0.15 1.59 7.63 -52.49 -0.40 1.19 16 35 H 0.10 1.38 4.54 -51.93 -0.24 1.14 16 36 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.09 1.45 5.98 -51.92 -0.31 1.14 16 38 H 0.08 1.57 7.84 -51.93 -0.41 1.16 16 39 H 0.09 1.67 7.79 -51.93 -0.40 1.26 16 40 H 0.08 1.43 8.06 -51.93 -0.42 1.01 16 41 H 0.10 2.49 5.95 -51.93 -0.31 2.18 16 42 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 44 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 45 H 0.06 1.19 7.96 -51.92 -0.41 0.78 16 46 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 47 H 0.05 0.78 6.13 -51.93 -0.32 0.46 16 LS Contribution 374.14 15.07 5.64 5.64 Total: -1.00 -31.46 374.14 -8.11 -39.57 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -6.52 Total: 2.74 kcal Atomic # 6 Polarization: 15.06 SS G_CDS: -1.21 Total: 13.84 kcal Atomic # 7 Polarization: -56.19 SS G_CDS: -0.52 Total: -56.70 kcal Atomic # 8 Polarization: -20.61 SS G_CDS: -0.47 Total: -21.08 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.03 Total: 15.99 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.46 -8.11 -39.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972620777.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.339 kcal (2) G-P(sol) polarization free energy of solvation -31.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds