Wall clock time and date at job start Wed Apr 1 2020 05:16:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35671 * 116.99542 * 2 1 4 4 C 1.39291 * 119.61705 * 179.97438 * 3 2 1 5 5 C 1.38330 * 119.30647 * 180.02562 * 4 3 2 6 6 C 1.38787 * 118.55879 * 0.02562 * 5 4 3 7 7 C 1.39124 * 119.18611 * 359.97438 * 6 5 4 8 8 C 1.48152 * 119.68892 * 179.97438 * 7 6 5 9 9 O 1.21524 * 119.99612 * 0.02562 * 8 7 6 10 10 N 1.34778 * 120.00385 * 179.97438 * 8 7 6 11 11 C 1.47482 * 125.65855 * 359.96196 * 10 8 7 12 12 C 1.55015 * 104.89625 * 204.04645 * 11 10 8 13 13 C 1.54518 * 101.53091 * 323.62902 * 12 11 10 14 14 C 1.47181 * 125.66269 * 180.02562 * 10 8 7 15 15 C 1.52102 * 109.89861 * 153.09913 * 13 12 11 16 16 N 1.47313 * 108.61081 * 72.26034 * 15 13 12 17 17 C 1.36940 * 121.06643 * 229.35543 * 16 15 13 18 18 H 1.07997 * 119.99705 * 154.08711 * 17 16 15 19 19 C 1.38812 * 119.99608 * 334.09084 * 17 16 15 20 20 N 1.31618 * 120.00341 * 343.38136 * 19 17 16 21 21 Si 1.86799 * 119.99590 * 163.38314 * 19 17 16 22 22 H 1.48498 * 109.47212 * 269.99635 * 21 19 17 23 23 H 1.48505 * 109.47309 * 29.99829 * 21 19 17 24 24 H 1.48500 * 109.47268 * 149.99599 * 21 19 17 25 25 C 1.47160 * 117.86659 * 49.08254 * 16 15 13 26 26 C 1.53277 * 108.55668 * 309.12794 * 25 16 15 27 27 O 1.42070 * 110.33007 * 276.06583 * 13 12 11 28 28 N 1.31897 * 119.61743 * 0.29847 * 3 2 1 29 29 H 1.09002 * 109.47159 * 60.00205 * 1 2 3 30 30 H 1.09002 * 109.46675 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47423 * 299.99639 * 1 2 3 32 32 H 1.07996 * 120.34538 * 0.04525 * 4 3 2 33 33 H 1.07996 * 120.71745 * 180.02562 * 5 4 3 34 34 H 1.07994 * 120.40443 * 180.02562 * 6 5 4 35 35 H 1.08997 * 110.35754 * 322.90235 * 11 10 8 36 36 H 1.09000 * 110.35321 * 85.19099 * 11 10 8 37 37 H 1.09007 * 111.01646 * 205.56553 * 12 11 10 38 38 H 1.09003 * 111.01499 * 81.68872 * 12 11 10 39 39 H 1.08996 * 109.91621 * 59.09572 * 14 10 8 40 40 H 1.09006 * 109.90809 * 297.82777 * 14 10 8 41 41 H 1.08999 * 109.62515 * 312.43720 * 15 13 12 42 42 H 1.09002 * 109.52344 * 192.01823 * 15 13 12 43 43 H 0.96995 * 119.99879 * 180.02562 * 20 19 17 44 44 H 1.08996 * 109.62888 * 68.84642 * 25 16 15 45 45 H 1.09008 * 109.62596 * 189.41180 * 25 16 15 46 46 H 1.09001 * 109.51316 * 172.82040 * 26 25 16 47 47 H 1.09004 * 109.50995 * 292.96466 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2089 0.0000 4 6 3.4363 1.2726 0.0005 5 6 4.0575 2.5086 0.0011 6 6 3.2663 3.6488 0.0016 7 6 1.8816 3.5138 0.0010 8 6 1.0264 4.7235 0.0022 9 8 1.5350 5.8272 0.0031 10 7 -0.3158 4.6000 0.0011 11 6 -1.0621 3.3280 -0.0020 12 6 -2.4434 3.6779 -0.6125 13 6 -2.6851 5.0923 -0.0392 14 6 -1.2798 5.7122 0.0015 15 6 -3.5919 5.8809 -0.9716 16 7 -4.9587 5.3419 -0.8652 17 6 -5.6808 5.0208 -1.9835 18 1 -6.4589 4.2739 -1.9279 19 6 -5.4126 5.6552 -3.1887 20 7 -4.7157 6.7717 -3.2039 21 14 -6.0408 4.9245 -4.7889 22 1 -5.0252 3.9913 -5.3393 23 1 -7.3042 4.1868 -4.5340 24 1 -6.2924 6.0144 -5.7657 25 6 -5.5210 5.1538 0.4817 26 6 -4.5150 4.3614 1.3240 27 8 -3.2395 5.0076 1.2661 28 7 1.3190 2.3102 0.0060 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 4.0239 0.3665 0.0002 33 1 5.1348 2.5845 0.0011 34 1 3.7199 4.6288 0.0016 35 1 -0.5507 2.5898 -0.6196 36 1 -1.1807 2.9556 1.0155 37 1 -3.2094 2.9816 -0.2712 38 1 -2.3951 3.7006 -1.7013 39 1 -1.1246 6.3384 -0.8771 40 1 -1.1620 6.3052 0.9085 41 1 -3.2372 5.7818 -1.9975 42 1 -3.5880 6.9314 -0.6812 43 1 -4.5286 7.2152 -4.0459 44 1 -5.6996 6.1251 0.9428 45 1 -6.4576 4.6002 0.4135 46 1 -4.8569 4.3225 2.3583 47 1 -4.4283 3.3487 0.9302 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972620777.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:16:10 Heat of formation + Delta-G solvation = -45.743702 kcal Electronic energy + Delta-G solvation = -31972.222080 eV Core-core repulsion = 27735.558610 eV Total energy + Delta-G solvation = -4236.663470 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.14113 -41.30165 -40.12762 -38.66178 -37.58939 -36.28510 -33.99440 -33.25560 -32.72519 -31.84950 -30.94278 -29.15303 -28.41602 -27.64839 -25.67205 -25.08007 -23.91969 -23.83350 -23.01902 -21.29801 -20.46038 -19.02760 -18.96835 -18.88005 -17.60849 -17.20445 -17.16489 -17.04614 -16.90302 -16.55267 -16.31434 -16.10593 -15.79779 -15.36031 -15.20459 -15.12834 -14.60976 -14.57811 -14.49027 -14.13417 -13.98846 -13.65260 -13.61698 -13.18513 -13.10395 -12.86746 -12.69294 -12.62927 -12.52167 -12.38526 -12.15140 -12.13780 -11.92907 -11.82493 -11.63232 -11.18456 -11.01613 -10.78599 -10.56434 -10.43635 -9.92366 -9.54576 -8.74288 -7.90209 -5.36394 -0.45034 0.22469 1.46143 1.47485 1.56202 1.58507 1.69527 2.07349 2.47149 2.70617 2.75456 2.85679 3.22097 3.37676 3.56386 3.63757 3.87722 3.91148 3.96287 4.03132 4.20838 4.23784 4.29075 4.36225 4.43490 4.44894 4.47067 4.49821 4.51745 4.65122 4.75546 4.77439 4.83309 4.91341 4.93328 5.01500 5.06825 5.09595 5.12773 5.16648 5.25050 5.33967 5.48696 5.61354 6.10864 6.28132 6.29103 6.38335 6.52319 6.90850 7.05598 7.74880 8.29530 9.16272 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.012874 B = 0.003238 C = 0.003158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2174.439474 B = 8644.555908 C = 8864.772967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.310 6.310 3 C 0.300 3.700 4 C -0.155 4.155 5 C -0.032 4.032 6 C -0.147 4.147 7 C 0.099 3.901 8 C 0.574 3.426 9 O -0.569 6.569 10 N -0.595 5.595 11 C 0.122 3.878 12 C -0.140 4.140 13 C 0.096 3.904 14 C 0.128 3.872 15 C 0.176 3.824 16 N -0.608 5.608 17 C -0.257 4.257 18 H 0.077 0.923 19 C -0.049 4.049 20 N -0.937 5.937 21 Si 0.966 3.034 22 H -0.285 1.285 23 H -0.265 1.265 24 H -0.299 1.299 25 C 0.103 3.897 26 C 0.052 3.948 27 O -0.382 6.382 28 N -0.525 5.525 29 H 0.054 0.946 30 H 0.124 0.876 31 H 0.058 0.942 32 H 0.178 0.822 33 H 0.193 0.807 34 H 0.152 0.848 35 H 0.110 0.890 36 H 0.074 0.926 37 H 0.098 0.902 38 H 0.066 0.934 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.067 0.933 42 H -0.007 1.007 43 H 0.249 0.751 44 H 0.014 0.986 45 H 0.076 0.924 46 H 0.120 0.880 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.204 -15.969 8.703 23.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.217 6.217 3 C 0.119 3.881 4 C -0.175 4.175 5 C -0.057 4.057 6 C -0.169 4.169 7 C -0.036 4.036 8 C 0.362 3.638 9 O -0.449 6.449 10 N -0.326 5.326 11 C 0.000 4.000 12 C -0.178 4.178 13 C 0.055 3.945 14 C 0.005 3.995 15 C 0.050 3.950 16 N -0.332 5.332 17 C -0.386 4.386 18 H 0.095 0.905 19 C -0.245 4.245 20 N -0.584 5.584 21 Si 0.794 3.206 22 H -0.212 1.212 23 H -0.189 1.189 24 H -0.226 1.226 25 C -0.022 4.022 26 C -0.025 4.025 27 O -0.302 6.302 28 N -0.252 5.252 29 H 0.072 0.928 30 H 0.142 0.858 31 H 0.077 0.923 32 H 0.195 0.805 33 H 0.210 0.790 34 H 0.170 0.830 35 H 0.128 0.872 36 H 0.092 0.908 37 H 0.117 0.883 38 H 0.084 0.916 39 H 0.089 0.911 40 H 0.092 0.908 41 H 0.086 0.914 42 H 0.011 0.989 43 H 0.058 0.942 44 H 0.032 0.968 45 H 0.095 0.905 46 H 0.138 0.862 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 14.792 -15.536 8.747 23.167 hybrid contribution -0.395 0.714 -1.276 1.514 sum 14.397 -14.822 7.471 21.972 Atomic orbital electron populations 1.23171 0.76072 1.04937 1.02218 1.86254 1.24000 1.23592 1.87818 1.20287 0.90599 0.84351 0.92909 1.21751 0.91131 1.01377 1.03258 1.21898 1.02640 0.89192 0.91982 1.22162 0.91991 1.02327 1.00445 1.20403 0.92567 0.89293 1.01369 1.18048 0.80686 0.88280 0.76753 1.90756 1.73698 1.27487 1.52914 1.48458 1.04531 1.09488 1.70116 1.22719 0.90118 0.85329 1.01837 1.23173 0.97331 0.96820 1.00509 1.22191 0.91561 0.96153 0.84625 1.21646 0.86173 0.89512 1.02181 1.20805 0.84313 0.92509 0.97421 1.44306 1.11678 1.75795 1.01466 1.19529 1.16080 1.15513 0.87523 0.90543 1.25774 1.01146 0.95777 1.01771 1.70182 1.45196 1.17340 1.25642 0.85284 0.78499 0.77190 0.79613 1.21151 1.18927 1.22645 1.21804 0.96902 0.97698 0.85824 1.23216 0.82468 0.95493 1.01373 1.87678 1.35342 1.80367 1.26783 1.67286 1.40877 0.98404 1.18651 0.92768 0.85769 0.92296 0.80469 0.78963 0.83038 0.87200 0.90775 0.88346 0.91576 0.91125 0.90842 0.91443 0.98934 0.94151 0.96757 0.90517 0.86193 0.91967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.03 113.37 1.14 1.62 16 2 O -0.31 -5.81 10.48 -89.87 -0.94 -6.76 16 3 C 0.30 6.09 7.49 84.94 0.64 6.73 16 4 C -0.15 -2.14 10.05 22.54 0.23 -1.91 16 5 C -0.03 -0.41 10.16 22.42 0.23 -0.18 16 6 C -0.15 -3.04 9.63 22.61 0.22 -2.82 16 7 C 0.10 2.69 6.72 41.84 0.28 2.97 16 8 C 0.57 19.80 7.84 86.88 0.68 20.48 16 9 O -0.57 -22.55 16.64 -3.79 -0.06 -22.62 16 10 N -0.59 -20.60 3.33 -815.38 -2.72 -23.32 16 11 C 0.12 3.61 5.93 86.88 0.52 4.13 16 12 C -0.14 -4.78 5.90 31.80 0.19 -4.60 16 13 C 0.10 3.77 0.83 -10.35 -0.01 3.76 16 14 C 0.13 4.92 6.24 86.47 0.54 5.46 16 15 C 0.18 8.58 3.91 85.93 0.34 8.92 16 16 N -0.61 -29.72 2.95 -699.41 -2.06 -31.79 16 17 C -0.26 -13.54 9.66 84.03 0.81 -12.73 16 18 H 0.08 3.85 7.88 -2.91 -0.02 3.83 16 19 C -0.05 -2.69 4.96 84.86 0.42 -2.27 16 20 N -0.94 -55.19 11.13 21.65 0.24 -54.95 16 21 Si 0.97 43.87 29.58 68.60 2.03 45.90 16 22 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 23 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 24 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 25 C 0.10 4.09 6.72 86.35 0.58 4.67 16 26 C 0.05 1.65 6.76 72.07 0.49 2.14 16 27 O -0.38 -14.25 10.23 -148.98 -1.52 -15.77 16 28 N -0.52 -13.01 5.50 -298.20 -1.64 -14.65 16 29 H 0.05 0.95 7.15 -2.39 -0.02 0.93 16 30 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.06 0.97 8.10 -2.39 -0.02 0.95 16 32 H 0.18 1.32 8.06 -2.91 -0.02 1.29 16 33 H 0.19 0.73 8.06 -2.91 -0.02 0.70 16 34 H 0.15 3.05 7.63 -2.91 -0.02 3.03 16 35 H 0.11 3.04 4.54 -2.39 -0.01 3.03 16 36 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 37 H 0.10 3.12 5.98 -2.38 -0.01 3.11 16 38 H 0.07 2.51 7.84 -2.39 -0.02 2.49 16 39 H 0.07 2.92 7.79 -2.39 -0.02 2.90 16 40 H 0.07 2.85 8.06 -2.38 -0.02 2.83 16 41 H 0.07 3.68 5.95 -2.39 -0.01 3.67 16 42 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 43 H 0.25 14.36 8.31 -92.71 -0.77 13.58 16 44 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 45 H 0.08 2.80 7.96 -2.38 -0.02 2.78 16 46 H 0.12 3.01 8.14 -2.39 -0.02 2.99 16 47 H 0.06 1.85 6.13 -2.38 -0.01 1.84 16 Total: -1.00 -71.63 374.14 1.59 -70.03 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: 1.00 Total: 17.54 kcal Atomic # 6 Polarization: 29.10 SS G_CDS: 7.28 Total: 36.37 kcal Atomic # 7 Polarization: -118.53 SS G_CDS: -6.18 Total: -124.71 kcal Atomic # 8 Polarization: -42.62 SS G_CDS: -2.53 Total: -45.14 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -71.63 1.59 -70.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972620777.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.288 kcal (2) G-P(sol) polarization free energy of solvation -71.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds