Wall clock time and date at job start Wed Apr 1 2020 05:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35650 * 116.99824 * 2 1 4 4 C 1.39342 * 120.54338 * 359.97438 * 3 2 1 5 5 C 1.38294 * 118.44334 * 180.02562 * 4 3 2 6 6 C 1.38777 * 119.44383 * 0.02562 * 5 4 3 7 7 N 1.31366 * 121.06770 * 359.97438 * 6 5 4 8 8 C 1.32863 * 121.69574 * 0.02562 * 7 6 5 9 9 C 1.47834 * 119.78336 * 180.02562 * 8 7 6 10 10 O 1.21553 * 119.99750 * 180.02562 * 9 8 7 11 11 N 1.34768 * 120.00014 * 359.97438 * 9 8 7 12 12 C 1.47087 * 125.63081 * 0.02891 * 11 9 8 13 13 C 1.54461 * 107.29220 * 180.98867 * 12 11 9 14 14 C 1.54371 * 102.87830 * 21.50250 * 13 12 11 15 15 C 1.47574 * 125.63266 * 179.72030 * 11 9 8 16 16 C 1.52355 * 110.38518 * 207.59618 * 14 13 12 17 17 N 1.47325 * 108.45328 * 186.60131 * 16 14 13 18 18 C 1.36940 * 121.07151 * 229.15378 * 17 16 14 19 19 H 1.08001 * 119.99751 * 153.76929 * 18 17 16 20 20 C 1.38813 * 120.00028 * 333.75894 * 18 17 16 21 21 N 1.31615 * 120.00293 * 344.17192 * 20 18 17 22 22 Si 1.86808 * 119.99736 * 164.16761 * 20 18 17 23 23 H 1.48500 * 109.46986 * 90.00549 * 22 20 18 24 24 H 1.48497 * 109.46961 * 209.99997 * 22 20 18 25 25 H 1.48490 * 109.46966 * 330.00293 * 22 20 18 26 26 C 1.47162 * 117.85107 * 49.12913 * 17 16 14 27 27 C 1.53289 * 108.53517 * 308.72031 * 26 17 16 28 28 O 1.41878 * 110.71984 * 83.66808 * 14 13 12 29 29 H 1.09001 * 109.47332 * 299.99911 * 1 2 3 30 30 H 1.09003 * 109.47076 * 59.99669 * 1 2 3 31 31 H 1.09001 * 109.47244 * 180.02562 * 1 2 3 32 32 H 1.08006 * 120.78075 * 0.04966 * 4 3 2 33 33 H 1.07998 * 120.28246 * 180.02562 * 5 4 3 34 34 H 1.08005 * 119.46394 * 180.02562 * 6 5 4 35 35 H 1.08997 * 109.88057 * 300.41104 * 12 11 9 36 36 H 1.08998 * 109.87919 * 61.56393 * 12 11 9 37 37 H 1.09007 * 110.73162 * 139.85048 * 13 12 11 38 38 H 1.08999 * 110.73587 * 263.15385 * 13 12 11 39 39 H 1.09002 * 110.37569 * 275.51403 * 15 11 9 40 40 H 1.09001 * 110.37433 * 37.85403 * 15 11 9 41 41 H 1.09005 * 109.63947 * 306.28532 * 16 14 13 42 42 H 1.09001 * 109.64353 * 66.69825 * 16 14 13 43 43 H 0.97003 * 120.00437 * 180.02562 * 21 20 18 44 44 H 1.08998 * 109.62694 * 68.43548 * 26 17 16 45 45 H 1.09004 * 109.62348 * 189.00871 * 26 17 16 46 46 H 1.08998 * 109.50903 * 172.98394 * 27 26 17 47 47 H 1.09000 * 109.51102 * 293.14254 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 1.2969 2.3844 -0.0005 5 6 1.9695 3.5928 -0.0011 6 6 3.3572 3.6012 -0.0016 7 7 4.0419 2.4801 -0.0011 8 6 3.4410 1.2951 -0.0006 9 6 4.2532 0.0598 0.0006 10 8 3.7074 -1.0263 0.0006 11 7 5.5986 0.1380 0.0006 12 6 6.3846 1.3812 0.0001 13 6 7.8763 0.9812 -0.0252 14 6 7.8378 -0.4553 -0.5890 15 6 6.5264 -1.0095 0.0075 16 6 9.0318 -1.2558 -0.0841 17 7 9.0418 -2.5603 -0.7687 18 6 9.1758 -3.7270 -0.0644 19 1 8.7749 -4.6474 -0.4628 20 6 9.8271 -3.7269 1.1615 21 7 10.5791 -2.7035 1.5071 22 14 9.6360 -5.1792 2.3207 23 1 10.6955 -6.1807 2.0383 24 1 9.7588 -4.7114 3.7247 25 1 8.3020 -5.8000 2.1207 26 6 8.9026 -2.5690 -2.2337 27 6 7.6771 -1.7293 -2.6117 28 8 7.7869 -0.4369 -2.0068 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 0.2173 2.3528 -0.0002 33 1 1.4194 4.5222 -0.0011 34 1 3.8828 4.5447 -0.0016 35 1 6.1442 1.9715 -0.8841 36 1 6.1702 1.9557 0.9012 37 1 8.4413 1.6397 -0.6850 38 1 8.2953 0.9897 0.9810 39 1 6.6884 -1.3605 1.0266 40 1 6.1379 -1.8155 -0.6151 41 1 9.9537 -0.7183 -0.3066 42 1 8.9449 -1.4040 0.9923 43 1 11.0345 -2.7036 2.3636 44 1 9.7951 -2.1397 -2.6888 45 1 8.7666 -3.5928 -2.5824 46 1 7.6300 -1.6213 -3.6953 47 1 6.7733 -2.2230 -2.2545 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972653773.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:55 Heat of formation + Delta-G solvation = -23.991990 kcal Electronic energy + Delta-G solvation = -31920.056979 eV Core-core repulsion = 27684.336734 eV Total energy + Delta-G solvation = -4235.720245 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.10120 -39.82495 -38.43984 -38.12266 -35.93066 -34.38006 -32.77706 -31.51226 -31.17666 -30.91463 -28.89410 -27.84654 -27.46099 -26.00737 -24.43402 -23.22499 -23.03136 -22.74434 -20.94119 -20.01199 -18.69318 -18.25603 -17.57945 -17.18346 -16.77139 -16.23913 -15.93046 -15.68818 -15.12489 -15.01933 -14.69192 -14.48012 -14.29821 -14.06118 -13.88430 -13.84718 -13.39036 -13.22545 -13.02125 -12.93297 -12.69174 -12.35834 -11.97264 -11.77621 -11.75083 -11.67715 -11.22213 -11.01836 -10.88825 -10.75749 -10.66418 -10.38316 -10.24380 -10.09907 -10.08901 -9.84476 -9.51257 -9.40364 -8.97583 -8.71685 -8.49251 -8.11226 -6.69412 -5.80262 -3.22766 0.49462 0.96829 2.87551 2.90193 3.21699 3.38566 3.45781 3.49354 3.78022 4.08842 4.28651 4.32954 4.41408 4.49037 4.65673 4.80331 4.83571 4.90741 5.03727 5.11417 5.19675 5.25888 5.38303 5.46732 5.56844 5.62635 5.65788 5.77650 5.89499 5.96537 6.03975 6.11542 6.16966 6.23865 6.34150 6.40337 6.45627 6.59175 6.66668 6.75500 6.85169 6.95668 7.11730 7.48243 7.56060 7.76612 7.87087 8.02525 8.36861 8.47395 9.15560 9.78311 10.35739 11.28219 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.014728 B = 0.003167 C = 0.002958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.658248 B = 8837.962229 C = 9465.011701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.271 6.271 3 C 0.135 3.865 4 C -0.178 4.178 5 C -0.111 4.111 6 C 0.054 3.946 7 N -0.412 5.412 8 C 0.054 3.946 9 C 0.578 3.422 10 O -0.523 6.523 11 N -0.594 5.594 12 C 0.125 3.875 13 C -0.122 4.122 14 C 0.085 3.915 15 C 0.096 3.904 16 C 0.164 3.836 17 N -0.595 5.595 18 C -0.250 4.250 19 H 0.068 0.932 20 C 0.003 3.997 21 N -0.905 5.905 22 Si 0.902 3.098 23 H -0.287 1.287 24 H -0.289 1.289 25 H -0.278 1.278 26 C 0.111 3.889 27 C 0.044 3.956 28 O -0.372 6.372 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.106 0.894 32 H 0.145 0.855 33 H 0.141 0.859 34 H 0.165 0.835 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.033 0.967 42 H 0.097 0.903 43 H 0.255 0.745 44 H 0.027 0.973 45 H 0.062 0.938 46 H 0.082 0.918 47 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.000 15.126 -3.253 23.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.181 6.181 3 C 0.084 3.916 4 C -0.204 4.204 5 C -0.131 4.131 6 C -0.107 4.107 7 N -0.124 5.124 8 C -0.085 4.085 9 C 0.365 3.635 10 O -0.399 6.399 11 N -0.327 5.327 12 C 0.002 3.998 13 C -0.160 4.160 14 C 0.043 3.957 15 C -0.026 4.026 16 C 0.038 3.962 17 N -0.319 5.319 18 C -0.379 4.379 19 H 0.086 0.914 20 C -0.195 4.195 21 N -0.550 5.550 22 Si 0.731 3.269 23 H -0.214 1.214 24 H -0.215 1.215 25 H -0.204 1.204 26 C -0.016 4.016 27 C -0.034 4.034 28 O -0.291 6.291 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.124 0.876 32 H 0.162 0.838 33 H 0.159 0.841 34 H 0.182 0.818 35 H 0.092 0.908 36 H 0.088 0.912 37 H 0.106 0.894 38 H 0.108 0.892 39 H 0.097 0.903 40 H 0.100 0.900 41 H 0.051 0.949 42 H 0.115 0.885 43 H 0.065 0.935 44 H 0.045 0.955 45 H 0.081 0.919 46 H 0.100 0.900 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -17.278 14.449 -3.197 22.749 hybrid contribution -1.263 -0.667 0.744 1.611 sum -18.541 13.782 -2.452 23.232 Atomic orbital electron populations 1.23215 0.78655 1.04719 1.01043 1.86459 1.20795 1.24499 1.86308 1.20063 0.92320 0.85782 0.93423 1.21723 1.00980 0.91830 1.05893 1.22186 0.95850 0.98283 0.96811 1.22775 0.91339 0.96617 0.99937 1.67950 1.39229 0.97324 1.07890 1.20744 0.88455 0.93001 1.06273 1.17215 0.80840 0.87212 0.78276 1.90834 1.70852 1.27657 1.50522 1.48372 1.04276 1.09351 1.70689 1.22056 0.89637 0.85964 1.02148 1.22658 0.95688 0.95704 1.01989 1.22749 0.95601 0.95556 0.81750 1.22823 0.88838 0.88783 1.02118 1.21172 0.91490 0.84568 0.98990 1.44116 1.85428 1.02774 0.99618 1.19176 1.29970 0.87507 1.01286 0.91415 1.25012 0.96782 0.97723 1.00031 1.69998 1.31328 1.31291 1.22340 0.86299 0.78051 0.82100 0.80413 1.21377 1.21485 1.20365 1.21586 0.94965 0.98135 0.86873 1.23100 0.98894 0.84872 0.96510 1.87620 1.94470 1.28500 1.18542 0.92577 0.92571 0.87612 0.83774 0.84119 0.81808 0.90840 0.91238 0.89422 0.89210 0.90253 0.89957 0.94889 0.88502 0.93542 0.95531 0.91944 0.90006 0.93506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.83 101.05 0.99 1.15 16 2 O -0.27 -3.78 8.56 -40.60 -0.35 -4.13 16 3 C 0.14 1.78 6.71 -38.55 -0.26 1.53 16 4 C -0.18 -1.59 9.13 -39.15 -0.36 -1.95 16 5 C -0.11 -0.83 10.10 -39.36 -0.40 -1.23 16 6 C 0.05 0.49 11.17 -17.55 -0.20 0.30 16 7 N -0.41 -5.40 6.84 -9.70 -0.07 -5.46 16 8 C 0.05 0.84 6.73 -82.88 -0.56 0.28 16 9 C 0.58 11.01 7.83 -12.34 -0.10 10.91 16 10 O -0.52 -11.48 15.40 -16.63 -0.26 -11.74 16 11 N -0.59 -11.00 3.33 -171.73 -0.57 -11.58 16 12 C 0.12 1.94 5.40 -2.96 -0.02 1.93 16 13 C -0.12 -1.99 6.11 -25.25 -0.15 -2.14 16 14 C 0.09 1.70 0.83 -89.52 -0.07 1.63 16 15 C 0.10 1.97 5.87 -2.74 -0.02 1.96 16 16 C 0.16 3.88 4.05 -3.92 -0.02 3.86 16 17 N -0.60 -14.99 2.99 -172.25 -0.52 -15.51 16 18 C -0.25 -6.85 9.66 -15.06 -0.15 -6.99 16 19 H 0.07 1.83 7.88 -52.49 -0.41 1.42 16 20 C 0.00 0.08 4.98 -17.43 -0.09 -0.01 16 21 N -0.90 -25.81 11.11 55.49 0.62 -25.19 16 22 Si 0.90 21.81 29.58 -169.99 -5.03 16.79 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 25 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 26 C 0.11 2.38 6.71 -3.53 -0.02 2.36 16 27 C 0.04 0.85 6.79 37.31 0.25 1.10 16 28 O -0.37 -7.53 10.28 -35.22 -0.36 -7.90 16 29 H 0.06 0.34 7.70 -51.93 -0.40 -0.06 16 30 H 0.06 0.34 7.70 -51.93 -0.40 -0.06 16 31 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.14 0.84 6.46 -52.48 -0.34 0.50 16 33 H 0.14 0.55 8.06 -52.49 -0.42 0.13 16 34 H 0.16 0.98 8.06 -52.48 -0.42 0.55 16 35 H 0.07 1.12 7.41 -51.93 -0.38 0.73 16 36 H 0.07 0.99 7.53 -51.93 -0.39 0.60 16 37 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16 38 H 0.09 1.40 8.00 -51.93 -0.42 0.98 16 39 H 0.08 1.72 7.82 -51.93 -0.41 1.31 16 40 H 0.08 1.85 6.05 -51.93 -0.31 1.54 16 41 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.10 2.50 5.95 -51.93 -0.31 2.19 16 43 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 44 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.06 1.28 7.96 -51.93 -0.41 0.87 16 46 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 47 H 0.05 0.94 6.29 -51.93 -0.33 0.61 16 LS Contribution 373.21 15.07 5.62 5.62 Total: -1.00 -34.48 373.21 -8.66 -43.14 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -6.61 Total: 1.27 kcal Atomic # 6 Polarization: 15.83 SS G_CDS: -1.15 Total: 14.68 kcal Atomic # 7 Polarization: -57.20 SS G_CDS: -0.54 Total: -57.74 kcal Atomic # 8 Polarization: -22.80 SS G_CDS: -0.97 Total: -23.76 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.03 Total: 16.79 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.48 -8.66 -43.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972653773.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.148 kcal (2) G-P(sol) polarization free energy of solvation -34.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds