Wall clock time and date at job start Wed Apr 1 2020 05:19:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42896 * 1
3 3 C 1.35650 * 116.99824 * 2 1
4 4 C 1.39342 * 120.54338 * 359.97438 * 3 2 1
5 5 C 1.38294 * 118.44334 * 180.02562 * 4 3 2
6 6 C 1.38777 * 119.44383 * 0.02562 * 5 4 3
7 7 N 1.31366 * 121.06770 * 359.97438 * 6 5 4
8 8 C 1.32863 * 121.69574 * 0.02562 * 7 6 5
9 9 C 1.47834 * 119.78336 * 180.02562 * 8 7 6
10 10 O 1.21553 * 119.99750 * 180.02562 * 9 8 7
11 11 N 1.34768 * 120.00014 * 359.97438 * 9 8 7
12 12 C 1.47087 * 125.63081 * 0.02891 * 11 9 8
13 13 C 1.54461 * 107.29220 * 180.98867 * 12 11 9
14 14 C 1.54371 * 102.87830 * 21.50250 * 13 12 11
15 15 C 1.47574 * 125.63266 * 179.72030 * 11 9 8
16 16 C 1.52355 * 110.38518 * 207.59618 * 14 13 12
17 17 N 1.47325 * 108.45328 * 186.60131 * 16 14 13
18 18 C 1.36940 * 121.07151 * 229.15378 * 17 16 14
19 19 H 1.08001 * 119.99751 * 153.76929 * 18 17 16
20 20 C 1.38813 * 120.00028 * 333.75894 * 18 17 16
21 21 N 1.31615 * 120.00293 * 344.17192 * 20 18 17
22 22 Si 1.86808 * 119.99736 * 164.16761 * 20 18 17
23 23 H 1.48500 * 109.46986 * 90.00549 * 22 20 18
24 24 H 1.48497 * 109.46961 * 209.99997 * 22 20 18
25 25 H 1.48490 * 109.46966 * 330.00293 * 22 20 18
26 26 C 1.47162 * 117.85107 * 49.12913 * 17 16 14
27 27 C 1.53289 * 108.53517 * 308.72031 * 26 17 16
28 28 O 1.41878 * 110.71984 * 83.66808 * 14 13 12
29 29 H 1.09001 * 109.47332 * 299.99911 * 1 2 3
30 30 H 1.09003 * 109.47076 * 59.99669 * 1 2 3
31 31 H 1.09001 * 109.47244 * 180.02562 * 1 2 3
32 32 H 1.08006 * 120.78075 * 0.04966 * 4 3 2
33 33 H 1.07998 * 120.28246 * 180.02562 * 5 4 3
34 34 H 1.08005 * 119.46394 * 180.02562 * 6 5 4
35 35 H 1.08997 * 109.88057 * 300.41104 * 12 11 9
36 36 H 1.08998 * 109.87919 * 61.56393 * 12 11 9
37 37 H 1.09007 * 110.73162 * 139.85048 * 13 12 11
38 38 H 1.08999 * 110.73587 * 263.15385 * 13 12 11
39 39 H 1.09002 * 110.37569 * 275.51403 * 15 11 9
40 40 H 1.09001 * 110.37433 * 37.85403 * 15 11 9
41 41 H 1.09005 * 109.63947 * 306.28532 * 16 14 13
42 42 H 1.09001 * 109.64353 * 66.69825 * 16 14 13
43 43 H 0.97003 * 120.00437 * 180.02562 * 21 20 18
44 44 H 1.08998 * 109.62694 * 68.43548 * 26 17 16
45 45 H 1.09004 * 109.62348 * 189.00871 * 26 17 16
46 46 H 1.08998 * 109.50903 * 172.98394 * 27 26 17
47 47 H 1.09000 * 109.51102 * 293.14254 * 27 26 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0448 1.2087 0.0000
4 6 1.2969 2.3844 -0.0005
5 6 1.9695 3.5928 -0.0011
6 6 3.3572 3.6012 -0.0016
7 7 4.0419 2.4801 -0.0011
8 6 3.4410 1.2951 -0.0006
9 6 4.2532 0.0598 0.0006
10 8 3.7074 -1.0263 0.0006
11 7 5.5986 0.1380 0.0006
12 6 6.3846 1.3812 0.0001
13 6 7.8763 0.9812 -0.0252
14 6 7.8378 -0.4553 -0.5890
15 6 6.5264 -1.0095 0.0075
16 6 9.0318 -1.2558 -0.0841
17 7 9.0418 -2.5603 -0.7687
18 6 9.1758 -3.7270 -0.0644
19 1 8.7749 -4.6474 -0.4628
20 6 9.8271 -3.7269 1.1615
21 7 10.5791 -2.7035 1.5071
22 14 9.6360 -5.1792 2.3207
23 1 10.6955 -6.1807 2.0383
24 1 9.7588 -4.7114 3.7247
25 1 8.3020 -5.8000 2.1207
26 6 8.9026 -2.5690 -2.2337
27 6 7.6771 -1.7293 -2.6117
28 8 7.7869 -0.4369 -2.0068
29 1 -0.3634 0.5138 0.8900
30 1 -0.3633 0.5139 -0.8900
31 1 -0.3634 -1.0277 0.0005
32 1 0.2173 2.3528 -0.0002
33 1 1.4194 4.5222 -0.0011
34 1 3.8828 4.5447 -0.0016
35 1 6.1442 1.9715 -0.8841
36 1 6.1702 1.9557 0.9012
37 1 8.4413 1.6397 -0.6850
38 1 8.2953 0.9897 0.9810
39 1 6.6884 -1.3605 1.0266
40 1 6.1379 -1.8155 -0.6151
41 1 9.9537 -0.7183 -0.3066
42 1 8.9449 -1.4040 0.9923
43 1 11.0345 -2.7036 2.3636
44 1 9.7951 -2.1397 -2.6888
45 1 8.7666 -3.5928 -2.5824
46 1 7.6300 -1.6213 -3.6953
47 1 6.7733 -2.2230 -2.2545
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000972653773.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:19:54
Heat of formation + Delta-G solvation = -47.410827 kcal
Electronic energy + Delta-G solvation = -31921.072496 eV
Core-core repulsion = 27684.336734 eV
Total energy + Delta-G solvation = -4236.735762 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 347.168 amu
Computer time = 1.14 seconds
Orbital eigenvalues (eV)
-42.08205 -41.25582 -39.70157 -39.16033 -37.49020 -36.26924 -33.73918 -33.26048
-32.76677 -31.81005 -30.40010 -29.34269 -28.39656 -27.67275 -25.69812 -25.00253
-24.11102 -23.80691 -22.59583 -21.23799 -20.38480 -19.15023 -18.91012 -18.65265
-18.03662 -17.56829 -17.08705 -16.86991 -16.70082 -16.41442 -16.14782 -15.75319
-15.68974 -15.29054 -15.20021 -15.15419 -14.76468 -14.59110 -14.52560 -14.33673
-13.94157 -13.61014 -13.39541 -13.29322 -13.00352 -12.81964 -12.68263 -12.52001
-12.43575 -12.41552 -12.22671 -12.16883 -12.13340 -11.81219 -11.31088 -11.15693
-10.81170 -10.78343 -10.54363 -10.47147 -9.76448 -9.40540 -8.72826 -7.91256
-5.36715 -0.36018 0.24563 1.43047 1.45701 1.54926 1.72930 1.86945
2.20417 2.46056 2.75296 2.82883 3.09909 3.24228 3.42840 3.57072
3.64284 3.72695 3.78498 4.02434 4.06523 4.16573 4.22134 4.27345
4.30450 4.33341 4.35294 4.47122 4.52820 4.57999 4.67709 4.68871
4.75994 4.87538 4.90782 4.93891 5.02248 5.02790 5.11057 5.16440
5.23288 5.31774 5.46486 5.50821 5.59938 6.21358 6.28235 6.35045
6.48705 6.75571 7.06674 7.11247 7.74037 8.28494 9.15014
Molecular weight = 347.17amu
Principal moments of inertia in cm(-1)
A = 0.014728 B = 0.003167 C = 0.002958
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1900.658248 B = 8837.962229 C = 9465.011701
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.010 3.990
2 O -0.314 6.314
3 C 0.121 3.879
4 C -0.171 4.171
5 C -0.084 4.084
6 C 0.053 3.947
7 N -0.432 5.432
8 C 0.007 3.993
9 C 0.569 3.431
10 O -0.570 6.570
11 N -0.599 5.599
12 C 0.136 3.864
13 C -0.116 4.116
14 C 0.093 3.907
15 C 0.105 3.895
16 C 0.176 3.824
17 N -0.615 5.615
18 C -0.264 4.264
19 H 0.065 0.935
20 C -0.044 4.044
21 N -0.930 5.930
22 Si 0.962 3.038
23 H -0.281 1.281
24 H -0.289 1.289
25 H -0.277 1.277
26 C 0.108 3.892
27 C 0.051 3.949
28 O -0.372 6.372
29 H 0.077 0.923
30 H 0.078 0.922
31 H 0.107 0.893
32 H 0.180 0.820
33 H 0.191 0.809
34 H 0.201 0.799
35 H 0.083 0.917
36 H 0.086 0.914
37 H 0.107 0.893
38 H 0.095 0.905
39 H 0.056 0.944
40 H 0.055 0.945
41 H 0.013 0.987
42 H 0.069 0.931
43 H 0.253 0.747
44 H 0.027 0.973
45 H 0.069 0.931
46 H 0.120 0.880
47 H 0.034 0.966
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -20.302 18.438 -3.756 27.681
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.084 4.084
2 O -0.225 6.225
3 C 0.070 3.930
4 C -0.197 4.197
5 C -0.104 4.104
6 C -0.109 4.109
7 N -0.144 5.144
8 C -0.128 4.128
9 C 0.358 3.642
10 O -0.450 6.450
11 N -0.331 5.331
12 C 0.014 3.986
13 C -0.154 4.154
14 C 0.050 3.950
15 C -0.018 4.018
16 C 0.050 3.950
17 N -0.339 5.339
18 C -0.394 4.394
19 H 0.083 0.917
20 C -0.239 4.239
21 N -0.576 5.576
22 Si 0.790 3.210
23 H -0.208 1.208
24 H -0.215 1.215
25 H -0.203 1.203
26 C -0.017 4.017
27 C -0.027 4.027
28 O -0.291 6.291
29 H 0.096 0.904
30 H 0.096 0.904
31 H 0.126 0.874
32 H 0.197 0.803
33 H 0.208 0.792
34 H 0.218 0.782
35 H 0.101 0.899
36 H 0.104 0.896
37 H 0.126 0.874
38 H 0.113 0.887
39 H 0.074 0.926
40 H 0.073 0.927
41 H 0.031 0.969
42 H 0.087 0.913
43 H 0.062 0.938
44 H 0.045 0.955
45 H 0.087 0.913
46 H 0.138 0.862
47 H 0.052 0.948
Dipole moment (debyes) X Y Z Total
from point charges -19.582 17.766 -3.724 26.701
hybrid contribution -0.662 -1.597 0.855 1.928
sum -20.244 16.169 -2.869 26.067
Atomic orbital electron populations
1.23511 0.76110 1.05709 1.03084 1.86397 1.23680 1.25890 1.86545
1.20293 0.91928 0.87004 0.93732 1.22162 1.02554 0.90605 1.04344
1.22770 0.95331 0.99555 0.92738 1.23530 0.92702 0.96472 0.98187
1.67803 1.40300 0.97507 1.08790 1.20186 0.89042 0.92247 1.11371
1.17997 0.80848 0.88436 0.76902 1.90774 1.71691 1.29858 1.52632
1.48461 1.04442 1.09340 1.70891 1.22106 0.88238 0.84828 1.03392
1.22725 0.96848 0.93368 1.02432 1.22549 0.93376 0.97282 0.81745
1.22457 0.89872 0.89284 1.00150 1.20931 0.92212 0.84413 0.97482
1.44375 1.85578 1.02689 1.01296 1.19440 1.29636 0.88309 1.01981
0.91683 1.25689 0.96817 1.00178 1.01255 1.70127 1.32122 1.32835
1.22484 0.85359 0.77900 0.79387 0.78343 1.20757 1.21486 1.20264
1.21729 0.95970 0.99183 0.84838 1.23119 0.96975 0.84100 0.98485
1.87623 1.94236 1.28887 1.18365 0.90432 0.90386 0.87425 0.80303
0.79170 0.78226 0.89873 0.89580 0.87410 0.88699 0.92597 0.92655
0.96864 0.91260 0.93817 0.95475 0.91282 0.86211 0.94798
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.01 0.15 9.83 113.37 1.11 1.26 16
2 O -0.31 -8.89 8.56 -68.66 -0.59 -9.48 16
3 C 0.12 3.10 6.71 22.94 0.15 3.25 16
4 C -0.17 -2.38 9.13 22.55 0.21 -2.17 16
5 C -0.08 -0.80 10.10 22.41 0.23 -0.57 16
6 C 0.05 0.75 11.17 84.89 0.95 1.70 16
7 N -0.43 -10.50 6.84 -184.61 -1.26 -11.76 16
8 C 0.01 0.23 6.73 41.93 0.28 0.51 16
9 C 0.57 22.78 7.83 86.78 0.68 23.46 16
10 O -0.57 -26.93 15.40 17.11 0.26 -26.67 16
11 N -0.60 -23.06 3.33 -815.50 -2.72 -25.78 16
12 C 0.14 4.16 5.40 86.76 0.47 4.63 16
13 C -0.12 -3.73 6.11 31.56 0.19 -3.54 16
14 C 0.09 3.80 0.83 -10.08 -0.01 3.79 16
15 C 0.11 4.60 5.87 86.63 0.51 5.11 16
16 C 0.18 8.68 4.05 86.01 0.35 9.03 16
17 N -0.61 -32.13 2.99 -698.87 -2.09 -34.22 16
18 C -0.26 -14.96 9.66 84.03 0.81 -14.15 16
19 H 0.07 3.63 7.88 -2.91 -0.02 3.61 16
20 C -0.04 -2.47 4.98 84.86 0.42 -2.05 16
21 N -0.93 -54.80 11.11 21.65 0.24 -54.56 16
22 Si 0.96 46.13 29.58 68.60 2.03 48.16 16
23 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16
24 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16
25 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16
26 C 0.11 4.73 6.71 86.35 0.58 5.31 16
27 C 0.05 1.95 6.79 72.08 0.49 2.44 16
28 O -0.37 -15.05 10.28 -148.95 -1.53 -16.58 16
29 H 0.08 0.76 7.70 -2.39 -0.02 0.74 16
30 H 0.08 0.76 7.70 -2.39 -0.02 0.74 16
31 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16
32 H 0.18 1.15 6.46 -2.91 -0.02 1.13 16
33 H 0.19 -0.01 8.06 -2.91 -0.02 -0.04 16
34 H 0.20 1.27 8.06 -2.91 -0.02 1.24 16
35 H 0.08 2.41 7.41 -2.39 -0.02 2.39 16
36 H 0.09 2.36 7.53 -2.39 -0.02 2.34 16
37 H 0.11 3.06 8.14 -2.38 -0.02 3.04 16
38 H 0.09 2.96 8.00 -2.39 -0.02 2.94 16
39 H 0.06 2.64 7.82 -2.39 -0.02 2.62 16
40 H 0.06 2.68 6.05 -2.39 -0.01 2.67 16
41 H 0.01 0.70 8.14 -2.38 -0.02 0.68 16
42 H 0.07 3.79 5.95 -2.39 -0.01 3.78 16
43 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16
44 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16
45 H 0.07 2.87 7.96 -2.39 -0.02 2.85 16
46 H 0.12 3.70 8.14 -2.39 -0.02 3.68 16
47 H 0.03 1.41 6.29 -2.39 -0.02 1.39 16
Total: -1.00 -81.51 373.21 2.76 -78.75
By element:
Atomic # 1 Polarization: 13.13 SS G_CDS: 0.99 Total: 14.12 kcal
Atomic # 6 Polarization: 30.59 SS G_CDS: 7.43 Total: 38.01 kcal
Atomic # 7 Polarization: -120.48 SS G_CDS: -5.83 Total: -126.31 kcal
Atomic # 8 Polarization: -50.88 SS G_CDS: -1.86 Total: -52.73 kcal
Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.16 kcal
Total: -81.51 2.76 -78.75 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000972653773.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 31.339 kcal
(2) G-P(sol) polarization free energy of solvation -81.510 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.171 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.761 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.750 kcal
(6) G-S(sol) free energy of system = (1) + (5) -47.411 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.15 seconds