Wall clock time and date at job start Wed Apr 1 2020 05:19:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35650 * 116.99824 * 2 1 4 4 C 1.39342 * 120.54338 * 359.97438 * 3 2 1 5 5 C 1.38294 * 118.44334 * 180.02562 * 4 3 2 6 6 C 1.38777 * 119.44383 * 0.02562 * 5 4 3 7 7 N 1.31366 * 121.06770 * 359.97438 * 6 5 4 8 8 C 1.32863 * 121.69574 * 0.02562 * 7 6 5 9 9 C 1.47834 * 119.78336 * 180.02562 * 8 7 6 10 10 O 1.21553 * 119.99750 * 180.02562 * 9 8 7 11 11 N 1.34768 * 120.00014 * 359.97438 * 9 8 7 12 12 C 1.47087 * 125.63081 * 0.02891 * 11 9 8 13 13 C 1.54461 * 107.29220 * 180.98867 * 12 11 9 14 14 C 1.54371 * 102.87830 * 21.50250 * 13 12 11 15 15 C 1.47574 * 125.63266 * 179.72030 * 11 9 8 16 16 C 1.52355 * 110.38518 * 207.59618 * 14 13 12 17 17 N 1.47325 * 108.45328 * 186.60131 * 16 14 13 18 18 C 1.36940 * 121.07151 * 229.15378 * 17 16 14 19 19 H 1.08001 * 119.99751 * 153.76929 * 18 17 16 20 20 C 1.38813 * 120.00028 * 333.75894 * 18 17 16 21 21 N 1.31615 * 120.00293 * 344.17192 * 20 18 17 22 22 Si 1.86808 * 119.99736 * 164.16761 * 20 18 17 23 23 H 1.48500 * 109.46986 * 90.00549 * 22 20 18 24 24 H 1.48497 * 109.46961 * 209.99997 * 22 20 18 25 25 H 1.48490 * 109.46966 * 330.00293 * 22 20 18 26 26 C 1.47162 * 117.85107 * 49.12913 * 17 16 14 27 27 C 1.53289 * 108.53517 * 308.72031 * 26 17 16 28 28 O 1.41878 * 110.71984 * 83.66808 * 14 13 12 29 29 H 1.09001 * 109.47332 * 299.99911 * 1 2 3 30 30 H 1.09003 * 109.47076 * 59.99669 * 1 2 3 31 31 H 1.09001 * 109.47244 * 180.02562 * 1 2 3 32 32 H 1.08006 * 120.78075 * 0.04966 * 4 3 2 33 33 H 1.07998 * 120.28246 * 180.02562 * 5 4 3 34 34 H 1.08005 * 119.46394 * 180.02562 * 6 5 4 35 35 H 1.08997 * 109.88057 * 300.41104 * 12 11 9 36 36 H 1.08998 * 109.87919 * 61.56393 * 12 11 9 37 37 H 1.09007 * 110.73162 * 139.85048 * 13 12 11 38 38 H 1.08999 * 110.73587 * 263.15385 * 13 12 11 39 39 H 1.09002 * 110.37569 * 275.51403 * 15 11 9 40 40 H 1.09001 * 110.37433 * 37.85403 * 15 11 9 41 41 H 1.09005 * 109.63947 * 306.28532 * 16 14 13 42 42 H 1.09001 * 109.64353 * 66.69825 * 16 14 13 43 43 H 0.97003 * 120.00437 * 180.02562 * 21 20 18 44 44 H 1.08998 * 109.62694 * 68.43548 * 26 17 16 45 45 H 1.09004 * 109.62348 * 189.00871 * 26 17 16 46 46 H 1.08998 * 109.50903 * 172.98394 * 27 26 17 47 47 H 1.09000 * 109.51102 * 293.14254 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 1.2969 2.3844 -0.0005 5 6 1.9695 3.5928 -0.0011 6 6 3.3572 3.6012 -0.0016 7 7 4.0419 2.4801 -0.0011 8 6 3.4410 1.2951 -0.0006 9 6 4.2532 0.0598 0.0006 10 8 3.7074 -1.0263 0.0006 11 7 5.5986 0.1380 0.0006 12 6 6.3846 1.3812 0.0001 13 6 7.8763 0.9812 -0.0252 14 6 7.8378 -0.4553 -0.5890 15 6 6.5264 -1.0095 0.0075 16 6 9.0318 -1.2558 -0.0841 17 7 9.0418 -2.5603 -0.7687 18 6 9.1758 -3.7270 -0.0644 19 1 8.7749 -4.6474 -0.4628 20 6 9.8271 -3.7269 1.1615 21 7 10.5791 -2.7035 1.5071 22 14 9.6360 -5.1792 2.3207 23 1 10.6955 -6.1807 2.0383 24 1 9.7588 -4.7114 3.7247 25 1 8.3020 -5.8000 2.1207 26 6 8.9026 -2.5690 -2.2337 27 6 7.6771 -1.7293 -2.6117 28 8 7.7869 -0.4369 -2.0068 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 0.2173 2.3528 -0.0002 33 1 1.4194 4.5222 -0.0011 34 1 3.8828 4.5447 -0.0016 35 1 6.1442 1.9715 -0.8841 36 1 6.1702 1.9557 0.9012 37 1 8.4413 1.6397 -0.6850 38 1 8.2953 0.9897 0.9810 39 1 6.6884 -1.3605 1.0266 40 1 6.1379 -1.8155 -0.6151 41 1 9.9537 -0.7183 -0.3066 42 1 8.9449 -1.4040 0.9923 43 1 11.0345 -2.7036 2.3636 44 1 9.7951 -2.1397 -2.6888 45 1 8.7666 -3.5928 -2.5824 46 1 7.6300 -1.6213 -3.6953 47 1 6.7733 -2.2230 -2.2545 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972653773.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:54 Heat of formation + Delta-G solvation = -47.410827 kcal Electronic energy + Delta-G solvation = -31921.072496 eV Core-core repulsion = 27684.336734 eV Total energy + Delta-G solvation = -4236.735762 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.08205 -41.25582 -39.70157 -39.16033 -37.49020 -36.26924 -33.73918 -33.26048 -32.76677 -31.81005 -30.40010 -29.34269 -28.39656 -27.67275 -25.69812 -25.00253 -24.11102 -23.80691 -22.59583 -21.23799 -20.38480 -19.15023 -18.91012 -18.65265 -18.03662 -17.56829 -17.08705 -16.86991 -16.70082 -16.41442 -16.14782 -15.75319 -15.68974 -15.29054 -15.20021 -15.15419 -14.76468 -14.59110 -14.52560 -14.33673 -13.94157 -13.61014 -13.39541 -13.29322 -13.00352 -12.81964 -12.68263 -12.52001 -12.43575 -12.41552 -12.22671 -12.16883 -12.13340 -11.81219 -11.31088 -11.15693 -10.81170 -10.78343 -10.54363 -10.47147 -9.76448 -9.40540 -8.72826 -7.91256 -5.36715 -0.36018 0.24563 1.43047 1.45701 1.54926 1.72930 1.86945 2.20417 2.46056 2.75296 2.82883 3.09909 3.24228 3.42840 3.57072 3.64284 3.72695 3.78498 4.02434 4.06523 4.16573 4.22134 4.27345 4.30450 4.33341 4.35294 4.47122 4.52820 4.57999 4.67709 4.68871 4.75994 4.87538 4.90782 4.93891 5.02248 5.02790 5.11057 5.16440 5.23288 5.31774 5.46486 5.50821 5.59938 6.21358 6.28235 6.35045 6.48705 6.75571 7.06674 7.11247 7.74037 8.28494 9.15014 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.014728 B = 0.003167 C = 0.002958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.658248 B = 8837.962229 C = 9465.011701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.314 6.314 3 C 0.121 3.879 4 C -0.171 4.171 5 C -0.084 4.084 6 C 0.053 3.947 7 N -0.432 5.432 8 C 0.007 3.993 9 C 0.569 3.431 10 O -0.570 6.570 11 N -0.599 5.599 12 C 0.136 3.864 13 C -0.116 4.116 14 C 0.093 3.907 15 C 0.105 3.895 16 C 0.176 3.824 17 N -0.615 5.615 18 C -0.264 4.264 19 H 0.065 0.935 20 C -0.044 4.044 21 N -0.930 5.930 22 Si 0.962 3.038 23 H -0.281 1.281 24 H -0.289 1.289 25 H -0.277 1.277 26 C 0.108 3.892 27 C 0.051 3.949 28 O -0.372 6.372 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.107 0.893 32 H 0.180 0.820 33 H 0.191 0.809 34 H 0.201 0.799 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.107 0.893 38 H 0.095 0.905 39 H 0.056 0.944 40 H 0.055 0.945 41 H 0.013 0.987 42 H 0.069 0.931 43 H 0.253 0.747 44 H 0.027 0.973 45 H 0.069 0.931 46 H 0.120 0.880 47 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.302 18.438 -3.756 27.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.225 6.225 3 C 0.070 3.930 4 C -0.197 4.197 5 C -0.104 4.104 6 C -0.109 4.109 7 N -0.144 5.144 8 C -0.128 4.128 9 C 0.358 3.642 10 O -0.450 6.450 11 N -0.331 5.331 12 C 0.014 3.986 13 C -0.154 4.154 14 C 0.050 3.950 15 C -0.018 4.018 16 C 0.050 3.950 17 N -0.339 5.339 18 C -0.394 4.394 19 H 0.083 0.917 20 C -0.239 4.239 21 N -0.576 5.576 22 Si 0.790 3.210 23 H -0.208 1.208 24 H -0.215 1.215 25 H -0.203 1.203 26 C -0.017 4.017 27 C -0.027 4.027 28 O -0.291 6.291 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.126 0.874 32 H 0.197 0.803 33 H 0.208 0.792 34 H 0.218 0.782 35 H 0.101 0.899 36 H 0.104 0.896 37 H 0.126 0.874 38 H 0.113 0.887 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.031 0.969 42 H 0.087 0.913 43 H 0.062 0.938 44 H 0.045 0.955 45 H 0.087 0.913 46 H 0.138 0.862 47 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -19.582 17.766 -3.724 26.701 hybrid contribution -0.662 -1.597 0.855 1.928 sum -20.244 16.169 -2.869 26.067 Atomic orbital electron populations 1.23511 0.76110 1.05709 1.03084 1.86397 1.23680 1.25890 1.86545 1.20293 0.91928 0.87004 0.93732 1.22162 1.02554 0.90605 1.04344 1.22770 0.95331 0.99555 0.92738 1.23530 0.92702 0.96472 0.98187 1.67803 1.40300 0.97507 1.08790 1.20186 0.89042 0.92247 1.11371 1.17997 0.80848 0.88436 0.76902 1.90774 1.71691 1.29858 1.52632 1.48461 1.04442 1.09340 1.70891 1.22106 0.88238 0.84828 1.03392 1.22725 0.96848 0.93368 1.02432 1.22549 0.93376 0.97282 0.81745 1.22457 0.89872 0.89284 1.00150 1.20931 0.92212 0.84413 0.97482 1.44375 1.85578 1.02689 1.01296 1.19440 1.29636 0.88309 1.01981 0.91683 1.25689 0.96817 1.00178 1.01255 1.70127 1.32122 1.32835 1.22484 0.85359 0.77900 0.79387 0.78343 1.20757 1.21486 1.20264 1.21729 0.95970 0.99183 0.84838 1.23119 0.96975 0.84100 0.98485 1.87623 1.94236 1.28887 1.18365 0.90432 0.90386 0.87425 0.80303 0.79170 0.78226 0.89873 0.89580 0.87410 0.88699 0.92597 0.92655 0.96864 0.91260 0.93817 0.95475 0.91282 0.86211 0.94798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.15 9.83 113.37 1.11 1.26 16 2 O -0.31 -8.89 8.56 -68.66 -0.59 -9.48 16 3 C 0.12 3.10 6.71 22.94 0.15 3.25 16 4 C -0.17 -2.38 9.13 22.55 0.21 -2.17 16 5 C -0.08 -0.80 10.10 22.41 0.23 -0.57 16 6 C 0.05 0.75 11.17 84.89 0.95 1.70 16 7 N -0.43 -10.50 6.84 -184.61 -1.26 -11.76 16 8 C 0.01 0.23 6.73 41.93 0.28 0.51 16 9 C 0.57 22.78 7.83 86.78 0.68 23.46 16 10 O -0.57 -26.93 15.40 17.11 0.26 -26.67 16 11 N -0.60 -23.06 3.33 -815.50 -2.72 -25.78 16 12 C 0.14 4.16 5.40 86.76 0.47 4.63 16 13 C -0.12 -3.73 6.11 31.56 0.19 -3.54 16 14 C 0.09 3.80 0.83 -10.08 -0.01 3.79 16 15 C 0.11 4.60 5.87 86.63 0.51 5.11 16 16 C 0.18 8.68 4.05 86.01 0.35 9.03 16 17 N -0.61 -32.13 2.99 -698.87 -2.09 -34.22 16 18 C -0.26 -14.96 9.66 84.03 0.81 -14.15 16 19 H 0.07 3.63 7.88 -2.91 -0.02 3.61 16 20 C -0.04 -2.47 4.98 84.86 0.42 -2.05 16 21 N -0.93 -54.80 11.11 21.65 0.24 -54.56 16 22 Si 0.96 46.13 29.58 68.60 2.03 48.16 16 23 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 24 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 25 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 26 C 0.11 4.73 6.71 86.35 0.58 5.31 16 27 C 0.05 1.95 6.79 72.08 0.49 2.44 16 28 O -0.37 -15.05 10.28 -148.95 -1.53 -16.58 16 29 H 0.08 0.76 7.70 -2.39 -0.02 0.74 16 30 H 0.08 0.76 7.70 -2.39 -0.02 0.74 16 31 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.18 1.15 6.46 -2.91 -0.02 1.13 16 33 H 0.19 -0.01 8.06 -2.91 -0.02 -0.04 16 34 H 0.20 1.27 8.06 -2.91 -0.02 1.24 16 35 H 0.08 2.41 7.41 -2.39 -0.02 2.39 16 36 H 0.09 2.36 7.53 -2.39 -0.02 2.34 16 37 H 0.11 3.06 8.14 -2.38 -0.02 3.04 16 38 H 0.09 2.96 8.00 -2.39 -0.02 2.94 16 39 H 0.06 2.64 7.82 -2.39 -0.02 2.62 16 40 H 0.06 2.68 6.05 -2.39 -0.01 2.67 16 41 H 0.01 0.70 8.14 -2.38 -0.02 0.68 16 42 H 0.07 3.79 5.95 -2.39 -0.01 3.78 16 43 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 44 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 45 H 0.07 2.87 7.96 -2.39 -0.02 2.85 16 46 H 0.12 3.70 8.14 -2.39 -0.02 3.68 16 47 H 0.03 1.41 6.29 -2.39 -0.02 1.39 16 Total: -1.00 -81.51 373.21 2.76 -78.75 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: 0.99 Total: 14.12 kcal Atomic # 6 Polarization: 30.59 SS G_CDS: 7.43 Total: 38.01 kcal Atomic # 7 Polarization: -120.48 SS G_CDS: -5.83 Total: -126.31 kcal Atomic # 8 Polarization: -50.88 SS G_CDS: -1.86 Total: -52.73 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.16 kcal Total: -81.51 2.76 -78.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972653773.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.339 kcal (2) G-P(sol) polarization free energy of solvation -81.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds