Wall clock time and date at job start Wed Apr 1 2020 05:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35946 * 117.00254 * 2 1 4 4 C 1.38748 * 119.98328 * 0.23162 * 3 2 1 5 5 C 1.38054 * 120.02500 * 180.23021 * 4 3 2 6 6 C 1.38921 * 119.97982 * 359.52091 * 5 4 3 7 7 N 1.39865 * 120.02426 * 180.27259 * 6 5 4 8 8 C 1.34773 * 119.99740 * 27.67500 * 7 6 5 9 9 O 1.21395 * 120.00206 * 5.22716 * 8 7 6 10 10 C 1.49340 * 120.00026 * 185.22799 * 8 7 6 11 11 O 1.21361 * 119.99882 * 6.88249 * 10 8 7 12 12 N 1.34773 * 119.99948 * 186.88397 * 10 8 7 13 13 C 1.46931 * 120.63317 * 355.33600 * 12 10 8 14 14 C 1.53624 * 108.54034 * 126.36872 * 13 12 10 15 15 C 1.53035 * 109.24182 * 54.86165 * 14 13 12 16 16 N 1.46505 * 109.45773 * 178.48935 * 15 14 13 17 17 C 1.36937 * 119.99782 * 275.05997 * 16 15 14 18 18 H 1.08004 * 120.00276 * 0.02562 * 17 16 15 19 19 C 1.38811 * 119.99810 * 180.02562 * 17 16 15 20 20 N 1.31619 * 120.00375 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99871 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47532 * 89.99692 * 21 19 17 23 23 H 1.48508 * 109.47223 * 209.99830 * 21 19 17 24 24 H 1.48496 * 109.47252 * 329.99818 * 21 19 17 25 25 C 1.53040 * 109.53850 * 298.50456 * 15 14 13 26 26 C 1.46928 * 120.63223 * 175.61956 * 12 10 8 27 27 C 1.38920 * 119.95648 * 0.24604 * 6 5 4 28 28 C 1.38057 * 119.97981 * 0.02562 * 27 6 5 29 29 H 1.09002 * 109.47426 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46878 * 300.00054 * 1 2 3 31 31 H 1.08997 * 109.47428 * 59.99487 * 1 2 3 32 32 H 1.08000 * 119.98943 * 0.02562 * 4 3 2 33 33 H 1.07996 * 120.01500 * 179.79033 * 5 4 3 34 34 H 0.96999 * 120.00127 * 207.67064 * 7 6 5 35 35 H 1.08997 * 109.58419 * 246.20313 * 13 12 10 36 36 H 1.09006 * 109.58346 * 6.63281 * 13 12 10 37 37 H 1.09003 * 109.63501 * 294.86476 * 14 13 12 38 38 H 1.09001 * 109.45153 * 174.74303 * 14 13 12 39 39 H 1.08999 * 109.45288 * 58.52067 * 15 14 13 40 40 H 0.96997 * 119.99906 * 95.06773 * 16 15 14 41 41 H 0.96991 * 120.00366 * 180.02562 * 20 19 17 42 42 H 1.09001 * 109.49787 * 301.41819 * 25 15 14 43 43 H 1.08994 * 109.52969 * 181.33474 * 25 15 14 44 44 H 1.09001 * 109.58142 * 353.36771 * 26 12 10 45 45 H 1.08996 * 109.58908 * 113.64808 * 26 12 10 46 46 H 1.08002 * 120.00989 * 180.02562 * 27 6 5 47 47 H 1.08005 * 119.99070 * 179.97438 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2902 2.3747 0.0049 5 6 1.9161 3.6052 0.0001 6 6 3.3034 3.6784 0.0004 7 7 3.9385 4.9246 0.0013 8 6 3.3233 5.9939 0.5439 9 8 2.2611 5.8578 1.1157 10 6 3.9484 7.3464 0.4418 11 8 4.9435 7.5054 -0.2344 12 7 3.4073 8.3902 1.1006 13 6 2.1469 8.2369 1.8401 14 6 2.3645 8.7206 3.2819 15 6 2.9083 10.1508 3.2574 16 7 3.0836 10.6299 4.6307 17 6 2.0263 11.1819 5.3034 18 1 1.0631 11.2638 4.8217 19 6 2.1924 11.6363 6.6045 20 7 3.3663 11.5371 7.1915 21 14 0.7500 12.3887 7.5224 22 1 0.0173 11.3229 8.2522 23 1 1.2510 13.3971 8.4907 24 1 -0.1652 13.0444 6.5541 25 6 4.2566 10.1735 2.5336 26 6 4.0634 9.7048 1.0880 27 6 4.0595 2.5130 0.0005 28 6 3.4318 1.2834 -0.0004 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 0.2118 2.3177 0.0091 33 1 1.3275 4.5107 0.0004 34 1 4.8216 5.0191 -0.3885 35 1 1.3694 8.8347 1.3646 36 1 1.8520 7.1875 1.8458 37 1 3.0793 8.0680 3.7832 38 1 1.4158 8.7012 3.8183 39 1 2.2044 10.7979 2.7341 40 1 3.9486 10.5561 5.0634 41 1 3.4823 11.8542 8.1007 42 1 4.9536 9.5072 3.0420 43 1 4.6550 11.1880 2.5370 44 1 5.0334 9.6243 0.5973 45 1 3.4401 10.4192 0.5502 46 1 5.1381 2.5689 0.0012 47 1 4.0195 0.3772 -0.0008 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996781247.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:28 Heat of formation + Delta-G solvation = -35.706360 kcal Electronic energy + Delta-G solvation = -29959.760241 eV Core-core repulsion = 25723.532022 eV Total energy + Delta-G solvation = -4236.228218 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.48610 -40.35364 -39.20254 -37.68849 -37.52843 -35.08458 -34.27894 -32.05449 -31.47369 -30.80373 -29.74237 -29.28513 -27.61874 -25.89376 -24.25362 -23.44935 -22.98361 -22.52786 -21.63746 -20.60348 -19.54992 -18.56692 -18.09479 -17.59251 -17.11409 -16.68084 -16.41500 -16.09037 -16.01309 -15.38062 -14.94718 -14.84265 -14.57819 -14.22947 -14.13428 -13.76306 -13.62391 -13.60364 -13.47124 -13.34194 -13.12133 -12.93713 -12.44080 -12.33273 -11.99823 -11.86606 -11.76213 -11.29965 -11.17298 -10.92334 -10.86502 -10.80468 -10.51187 -10.37321 -10.23958 -9.84148 -9.71500 -9.41198 -9.18865 -8.79275 -8.68239 -8.06210 -6.97159 -5.77898 -3.06981 0.73357 0.99399 1.44042 2.08402 2.92158 2.97583 3.32281 3.42570 3.46248 3.47724 3.49300 4.05830 4.46169 4.51354 4.57187 4.71683 4.78729 4.88332 4.99099 5.10396 5.12556 5.15401 5.25479 5.32509 5.43825 5.46711 5.56582 5.65678 5.67098 5.78666 5.86321 5.92225 5.92936 6.02814 6.15690 6.23977 6.25729 6.39311 6.47165 6.51388 6.58395 6.78219 6.88671 7.02243 7.05501 7.25189 7.53822 7.68408 7.80154 8.40389 9.51579 10.08919 10.43689 11.44722 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013800 B = 0.002166 C = 0.001954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2028.445062 B =12922.339927 C =14326.191285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.318 6.318 3 C 0.112 3.888 4 C -0.186 4.186 5 C -0.084 4.084 6 C 0.106 3.894 7 N -0.639 5.639 8 C 0.512 3.488 9 O -0.486 6.486 10 C 0.506 3.494 11 O -0.532 6.532 12 N -0.564 5.564 13 C 0.044 3.956 14 C -0.146 4.146 15 C 0.175 3.825 16 N -0.724 5.724 17 C -0.238 4.238 18 H 0.070 0.930 19 C -0.014 4.014 20 N -0.933 5.933 21 Si 0.906 3.094 22 H -0.290 1.290 23 H -0.292 1.292 24 H -0.282 1.282 25 C -0.138 4.138 26 C 0.111 3.889 27 C -0.102 4.102 28 C -0.131 4.131 29 H 0.099 0.901 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.133 0.867 33 H 0.146 0.854 34 H 0.423 0.577 35 H 0.066 0.934 36 H 0.151 0.849 37 H 0.057 0.943 38 H 0.075 0.925 39 H 0.048 0.952 40 H 0.383 0.617 41 H 0.255 0.745 42 H 0.064 0.936 43 H 0.079 0.921 44 H 0.090 0.910 45 H 0.074 0.926 46 H 0.136 0.864 47 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.405 -20.621 -19.347 28.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.232 6.232 3 C 0.066 3.934 4 C -0.205 4.205 5 C -0.104 4.104 6 C 0.012 3.988 7 N -0.285 5.285 8 C 0.296 3.704 9 O -0.362 6.362 10 C 0.288 3.712 11 O -0.410 6.410 12 N -0.296 5.296 13 C -0.077 4.077 14 C -0.187 4.187 15 C 0.065 3.935 16 N -0.365 5.365 17 C -0.370 4.370 18 H 0.088 0.912 19 C -0.210 4.210 20 N -0.581 5.581 21 Si 0.738 3.262 22 H -0.217 1.217 23 H -0.218 1.218 24 H -0.208 1.208 25 C -0.177 4.177 26 C -0.011 4.011 27 C -0.122 4.122 28 C -0.150 4.150 29 H 0.118 0.882 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.151 0.849 33 H 0.164 0.836 34 H 0.261 0.739 35 H 0.084 0.916 36 H 0.167 0.833 37 H 0.076 0.924 38 H 0.094 0.906 39 H 0.066 0.934 40 H 0.217 0.783 41 H 0.065 0.935 42 H 0.083 0.917 43 H 0.098 0.902 44 H 0.109 0.891 45 H 0.092 0.908 46 H 0.154 0.846 47 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -1.709 -20.626 -19.216 28.242 hybrid contribution -0.354 0.713 0.745 1.091 sum -2.063 -19.913 -18.471 27.239 Atomic orbital electron populations 1.23075 0.78260 1.03989 1.01554 1.86064 1.21484 1.26809 1.88838 1.19058 0.92369 0.84258 0.97678 1.21162 1.00323 0.91614 1.07418 1.21130 0.92831 0.98641 0.97756 1.17671 0.92117 0.84142 1.04828 1.43143 1.21739 1.06365 1.57231 1.20521 0.85408 0.86136 0.78327 1.90335 1.22119 1.83865 1.39840 1.19613 0.84725 0.85171 0.81717 1.90751 1.25510 1.84554 1.40227 1.48133 1.24583 1.09330 1.47526 1.23563 0.83205 1.08439 0.92506 1.22688 1.02585 0.99666 0.93744 1.20233 0.93455 0.92469 0.87316 1.42427 1.11817 1.72237 1.09991 1.19233 0.90804 1.31621 0.95306 0.91161 1.24752 0.96843 1.02098 0.97321 1.69658 1.21907 1.52751 1.13798 0.86199 0.81682 0.78665 0.79694 1.21734 1.21806 1.20768 1.22209 0.99779 1.01907 0.93808 1.21835 0.98731 0.82209 0.98313 1.20690 0.99925 0.90144 1.01461 1.20186 0.91338 0.98005 1.05463 0.88217 0.92447 0.92582 0.84928 0.83604 0.73918 0.91610 0.83291 0.92436 0.90603 0.93393 0.78300 0.93513 0.91745 0.90206 0.89114 0.90784 0.84618 0.84603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.81 101.05 0.99 1.13 16 2 O -0.32 -2.80 10.50 -19.57 -0.21 -3.00 16 3 C 0.11 1.04 6.69 -39.20 -0.26 0.78 16 4 C -0.19 -1.71 9.03 -39.46 -0.36 -2.07 16 5 C -0.08 -0.87 8.69 -39.40 -0.34 -1.22 16 6 C 0.11 1.06 6.38 -83.69 -0.53 0.53 16 7 N -0.64 -6.42 5.34 -10.27 -0.05 -6.48 16 8 C 0.51 6.35 7.59 -11.64 -0.09 6.27 16 9 O -0.49 -6.62 10.33 5.46 0.06 -6.57 16 10 C 0.51 6.98 7.75 -11.64 -0.09 6.89 16 11 O -0.53 -7.94 15.94 5.49 0.09 -7.86 16 12 N -0.56 -7.99 2.97 -173.05 -0.51 -8.50 16 13 C 0.04 0.63 6.30 -3.48 -0.02 0.61 16 14 C -0.15 -2.58 5.67 -26.39 -0.15 -2.73 16 15 C 0.18 3.38 2.73 -67.89 -0.19 3.20 16 16 N -0.72 -17.89 5.12 -53.38 -0.27 -18.16 16 17 C -0.24 -6.53 9.93 -15.06 -0.15 -6.68 16 18 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 19 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 20 N -0.93 -28.12 13.06 55.49 0.72 -27.39 16 21 Si 0.91 22.30 29.55 -169.99 -5.02 17.28 16 22 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 23 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 25 C -0.14 -2.24 5.55 -26.61 -0.15 -2.38 16 26 C 0.11 1.53 6.42 -3.71 -0.02 1.51 16 27 C -0.10 -0.84 9.94 -39.40 -0.39 -1.23 16 28 C -0.13 -1.11 9.98 -39.46 -0.39 -1.50 16 29 H 0.10 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.28 7.65 -51.93 -0.40 -0.11 16 31 H 0.06 0.25 7.67 -51.93 -0.40 -0.15 16 32 H 0.13 0.96 6.29 -52.49 -0.33 0.63 16 33 H 0.15 1.62 5.98 -52.49 -0.31 1.31 16 34 H 0.42 3.47 8.31 -40.82 -0.34 3.14 16 35 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.15 2.17 3.71 -57.17 -0.21 1.96 16 37 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 39 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 40 H 0.38 10.15 7.80 -40.82 -0.32 9.83 16 41 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 42 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 43 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 44 H 0.09 1.22 7.03 -51.93 -0.37 0.85 16 45 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 46 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 47 H 0.14 0.92 8.06 -52.48 -0.42 0.49 16 LS Contribution 383.84 15.07 5.78 5.78 Total: -1.00 -32.60 383.84 -8.10 -40.70 By element: Atomic # 1 Polarization: 18.03 SS G_CDS: -6.44 Total: 11.59 kcal Atomic # 6 Polarization: 4.84 SS G_CDS: -2.24 Total: 2.60 kcal Atomic # 7 Polarization: -60.42 SS G_CDS: -0.12 Total: -60.53 kcal Atomic # 8 Polarization: -17.36 SS G_CDS: -0.06 Total: -17.42 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.60 -8.10 -40.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996781247.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.998 kcal (2) G-P(sol) polarization free energy of solvation -32.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds