Wall clock time and date at job start Wed Apr 1 2020 05:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35946 * 117.00254 * 2 1 4 4 C 1.38748 * 119.98328 * 0.23162 * 3 2 1 5 5 C 1.38054 * 120.02500 * 180.23021 * 4 3 2 6 6 C 1.38921 * 119.97982 * 359.52091 * 5 4 3 7 7 N 1.39865 * 120.02426 * 180.27259 * 6 5 4 8 8 C 1.34773 * 119.99740 * 27.67500 * 7 6 5 9 9 O 1.21395 * 120.00206 * 5.22716 * 8 7 6 10 10 C 1.49340 * 120.00026 * 185.22799 * 8 7 6 11 11 O 1.21361 * 119.99882 * 6.88249 * 10 8 7 12 12 N 1.34773 * 119.99948 * 186.88397 * 10 8 7 13 13 C 1.46931 * 120.63317 * 355.33600 * 12 10 8 14 14 C 1.53624 * 108.54034 * 126.36872 * 13 12 10 15 15 C 1.53035 * 109.24182 * 54.86165 * 14 13 12 16 16 N 1.46505 * 109.45773 * 178.48935 * 15 14 13 17 17 C 1.36937 * 119.99782 * 275.05997 * 16 15 14 18 18 H 1.08004 * 120.00276 * 0.02562 * 17 16 15 19 19 C 1.38811 * 119.99810 * 180.02562 * 17 16 15 20 20 N 1.31619 * 120.00375 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99871 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47532 * 89.99692 * 21 19 17 23 23 H 1.48508 * 109.47223 * 209.99830 * 21 19 17 24 24 H 1.48496 * 109.47252 * 329.99818 * 21 19 17 25 25 C 1.53040 * 109.53850 * 298.50456 * 15 14 13 26 26 C 1.46928 * 120.63223 * 175.61956 * 12 10 8 27 27 C 1.38920 * 119.95648 * 0.24604 * 6 5 4 28 28 C 1.38057 * 119.97981 * 0.02562 * 27 6 5 29 29 H 1.09002 * 109.47426 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46878 * 300.00054 * 1 2 3 31 31 H 1.08997 * 109.47428 * 59.99487 * 1 2 3 32 32 H 1.08000 * 119.98943 * 0.02562 * 4 3 2 33 33 H 1.07996 * 120.01500 * 179.79033 * 5 4 3 34 34 H 0.96999 * 120.00127 * 207.67064 * 7 6 5 35 35 H 1.08997 * 109.58419 * 246.20313 * 13 12 10 36 36 H 1.09006 * 109.58346 * 6.63281 * 13 12 10 37 37 H 1.09003 * 109.63501 * 294.86476 * 14 13 12 38 38 H 1.09001 * 109.45153 * 174.74303 * 14 13 12 39 39 H 1.08999 * 109.45288 * 58.52067 * 15 14 13 40 40 H 0.96997 * 119.99906 * 95.06773 * 16 15 14 41 41 H 0.96991 * 120.00366 * 180.02562 * 20 19 17 42 42 H 1.09001 * 109.49787 * 301.41819 * 25 15 14 43 43 H 1.08994 * 109.52969 * 181.33474 * 25 15 14 44 44 H 1.09001 * 109.58142 * 353.36771 * 26 12 10 45 45 H 1.08996 * 109.58908 * 113.64808 * 26 12 10 46 46 H 1.08002 * 120.00989 * 180.02562 * 27 6 5 47 47 H 1.08005 * 119.99070 * 179.97438 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2902 2.3747 0.0049 5 6 1.9161 3.6052 0.0001 6 6 3.3034 3.6784 0.0004 7 7 3.9385 4.9246 0.0013 8 6 3.3233 5.9939 0.5439 9 8 2.2611 5.8578 1.1157 10 6 3.9484 7.3464 0.4418 11 8 4.9435 7.5054 -0.2344 12 7 3.4073 8.3902 1.1006 13 6 2.1469 8.2369 1.8401 14 6 2.3645 8.7206 3.2819 15 6 2.9083 10.1508 3.2574 16 7 3.0836 10.6299 4.6307 17 6 2.0263 11.1819 5.3034 18 1 1.0631 11.2638 4.8217 19 6 2.1924 11.6363 6.6045 20 7 3.3663 11.5371 7.1915 21 14 0.7500 12.3887 7.5224 22 1 0.0173 11.3229 8.2522 23 1 1.2510 13.3971 8.4907 24 1 -0.1652 13.0444 6.5541 25 6 4.2566 10.1735 2.5336 26 6 4.0634 9.7048 1.0880 27 6 4.0595 2.5130 0.0005 28 6 3.4318 1.2834 -0.0004 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 0.2118 2.3177 0.0091 33 1 1.3275 4.5107 0.0004 34 1 4.8216 5.0191 -0.3885 35 1 1.3694 8.8347 1.3646 36 1 1.8520 7.1875 1.8458 37 1 3.0793 8.0680 3.7832 38 1 1.4158 8.7012 3.8183 39 1 2.2044 10.7979 2.7341 40 1 3.9486 10.5561 5.0634 41 1 3.4823 11.8542 8.1007 42 1 4.9536 9.5072 3.0420 43 1 4.6550 11.1880 2.5370 44 1 5.0334 9.6243 0.5973 45 1 3.4401 10.4192 0.5502 46 1 5.1381 2.5689 0.0012 47 1 4.0195 0.3772 -0.0008 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996781247.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:27 Heat of formation + Delta-G solvation = -57.845159 kcal Electronic energy + Delta-G solvation = -29960.720251 eV Core-core repulsion = 25723.532022 eV Total energy + Delta-G solvation = -4237.188229 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.44647 -41.13241 -40.15716 -38.88745 -38.41330 -36.37978 -35.49525 -33.81863 -32.19469 -32.05199 -31.09850 -30.39017 -28.20214 -27.15843 -25.74469 -24.45426 -24.28932 -23.59632 -22.60641 -21.72135 -20.82468 -19.34229 -19.13554 -18.89299 -18.51244 -17.76688 -17.30456 -17.00381 -16.70916 -16.62424 -16.29502 -15.76129 -15.64632 -15.44591 -15.38531 -15.09548 -14.91371 -14.82588 -14.61256 -14.28788 -13.91204 -13.82022 -13.74642 -13.34573 -13.19354 -12.85162 -12.84107 -12.79952 -12.47018 -12.42115 -12.18398 -12.13228 -11.97586 -11.84864 -11.71351 -11.33970 -11.13019 -10.97155 -10.21805 -10.00231 -9.85729 -8.99337 -8.78520 -7.93803 -5.22390 -0.13831 0.31377 0.57748 1.11224 1.47409 1.48817 1.57031 1.96170 2.29631 2.41512 2.56372 2.75195 3.06807 3.39486 3.77523 3.80966 3.88459 3.89212 4.08611 4.15721 4.17667 4.30623 4.32756 4.37701 4.41127 4.44793 4.47037 4.58830 4.69694 4.75997 4.77805 4.83195 4.93185 5.00947 5.02885 5.07159 5.17099 5.21373 5.33589 5.39092 5.44655 5.51407 5.56387 5.75071 5.91810 6.14114 6.28136 6.40630 6.58287 6.77009 7.34052 8.09727 8.32818 9.29777 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013800 B = 0.002166 C = 0.001954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2028.445062 B =12922.339927 C =14326.191285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.332 6.332 3 C 0.105 3.895 4 C -0.192 4.192 5 C -0.098 4.098 6 C 0.086 3.914 7 N -0.624 5.624 8 C 0.512 3.488 9 O -0.502 6.502 10 C 0.509 3.491 11 O -0.542 6.542 12 N -0.569 5.569 13 C 0.057 3.943 14 C -0.135 4.135 15 C 0.170 3.830 16 N -0.738 5.738 17 C -0.235 4.235 18 H 0.077 0.923 19 C -0.079 4.079 20 N -0.971 5.971 21 Si 0.971 3.029 22 H -0.289 1.289 23 H -0.297 1.297 24 H -0.268 1.268 25 C -0.127 4.127 26 C 0.118 3.882 27 C -0.094 4.094 28 C -0.137 4.137 29 H 0.119 0.881 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.147 0.853 33 H 0.136 0.864 34 H 0.432 0.568 35 H 0.081 0.919 36 H 0.156 0.844 37 H 0.040 0.960 38 H 0.059 0.941 39 H 0.050 0.950 40 H 0.371 0.629 41 H 0.250 0.750 42 H 0.053 0.947 43 H 0.081 0.919 44 H 0.099 0.901 45 H 0.093 0.907 46 H 0.162 0.838 47 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.023 -21.778 -21.001 30.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.246 6.246 3 C 0.059 3.941 4 C -0.211 4.211 5 C -0.118 4.118 6 C -0.007 4.007 7 N -0.270 5.270 8 C 0.296 3.704 9 O -0.379 6.379 10 C 0.291 3.709 11 O -0.421 6.421 12 N -0.301 5.301 13 C -0.064 4.064 14 C -0.176 4.176 15 C 0.061 3.939 16 N -0.377 5.377 17 C -0.367 4.367 18 H 0.095 0.905 19 C -0.271 4.271 20 N -0.622 5.622 21 Si 0.801 3.199 22 H -0.217 1.217 23 H -0.224 1.224 24 H -0.192 1.192 25 C -0.166 4.166 26 C -0.004 4.004 27 C -0.114 4.114 28 C -0.156 4.156 29 H 0.138 0.862 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.165 0.835 33 H 0.153 0.847 34 H 0.271 0.729 35 H 0.099 0.901 36 H 0.172 0.828 37 H 0.059 0.941 38 H 0.078 0.922 39 H 0.068 0.932 40 H 0.202 0.798 41 H 0.058 0.942 42 H 0.071 0.929 43 H 0.099 0.901 44 H 0.117 0.883 45 H 0.111 0.889 46 H 0.179 0.821 47 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -2.337 -21.819 -20.942 30.333 hybrid contribution -0.164 0.936 1.164 1.502 sum -2.500 -20.884 -19.777 28.871 Atomic orbital electron populations 1.23332 0.76649 1.05571 1.02134 1.86051 1.23246 1.26574 1.88687 1.19284 0.92943 0.84503 0.97330 1.21309 1.01206 0.91250 1.07320 1.21154 0.93235 0.98748 0.98646 1.17848 0.92257 0.84398 1.06200 1.43017 1.21828 1.05931 1.56199 1.20259 0.85327 0.86097 0.78731 1.90315 1.22773 1.83897 1.40907 1.19805 0.84372 0.85512 0.81205 1.90744 1.25902 1.84808 1.40633 1.48147 1.24523 1.09693 1.47721 1.23439 0.83758 1.08907 0.90281 1.22478 1.01029 0.98210 0.95880 1.20484 0.95404 0.92974 0.84999 1.42652 1.10667 1.72466 1.11902 1.19622 0.91577 1.30029 0.95438 0.90464 1.25557 0.99314 1.03707 0.98526 1.69818 1.23950 1.54655 1.13813 0.85168 0.78846 0.77579 0.78357 1.21654 1.22420 1.19250 1.22062 0.97539 1.01950 0.95077 1.21805 0.99703 0.82470 0.96442 1.20957 1.01162 0.89321 0.99933 1.20501 0.91383 0.98798 1.04885 0.86240 0.92173 0.91679 0.83541 0.84662 0.72861 0.90099 0.82850 0.94123 0.92183 0.93175 0.79782 0.94163 0.92860 0.90081 0.88286 0.88852 0.82062 0.82849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 113.37 1.11 1.27 16 2 O -0.33 -5.33 10.50 -92.94 -0.98 -6.31 16 3 C 0.11 1.82 6.69 22.51 0.15 1.97 16 4 C -0.19 -3.35 9.03 22.35 0.20 -3.14 16 5 C -0.10 -1.98 8.69 22.39 0.19 -1.79 16 6 C 0.09 1.62 6.38 38.19 0.24 1.86 16 7 N -0.62 -11.69 5.34 -304.74 -1.63 -13.32 16 8 C 0.51 12.16 7.59 87.24 0.66 12.82 16 9 O -0.50 -13.31 10.33 -3.39 -0.03 -13.35 16 10 C 0.51 13.29 7.75 87.24 0.68 13.96 16 11 O -0.54 -15.25 15.94 -3.28 -0.05 -15.30 16 12 N -0.57 -15.27 2.97 -819.76 -2.43 -17.70 16 13 C 0.06 1.59 6.30 86.51 0.54 2.13 16 14 C -0.14 -4.77 5.67 30.82 0.17 -4.59 16 15 C 0.17 6.50 2.73 45.02 0.12 6.62 16 16 N -0.74 -36.91 5.12 -322.81 -1.65 -38.57 16 17 C -0.23 -12.90 9.93 84.03 0.83 -12.07 16 18 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 19 C -0.08 -4.54 5.50 84.86 0.47 -4.08 16 20 N -0.97 -59.80 13.06 21.65 0.28 -59.52 16 21 Si 0.97 46.19 29.55 68.60 2.03 48.22 16 22 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 23 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 24 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 25 C -0.13 -4.05 5.55 30.67 0.17 -3.87 16 26 C 0.12 3.03 6.42 86.36 0.55 3.58 16 27 C -0.09 -1.36 9.94 22.39 0.22 -1.14 16 28 C -0.14 -2.06 9.98 22.35 0.22 -1.84 16 29 H 0.12 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.06 0.51 7.65 -2.38 -0.02 0.49 16 31 H 0.06 0.47 7.67 -2.39 -0.02 0.45 16 32 H 0.15 1.98 6.29 -2.91 -0.02 1.96 16 33 H 0.14 2.99 5.98 -2.91 -0.02 2.97 16 34 H 0.43 6.36 8.31 -92.71 -0.77 5.59 16 35 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.16 4.33 3.71 -85.50 -0.32 4.01 16 37 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 39 H 0.05 1.91 8.08 -2.39 -0.02 1.89 16 40 H 0.37 20.16 7.80 -92.71 -0.72 19.44 16 41 H 0.25 14.95 8.31 -92.71 -0.77 14.18 16 42 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 43 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 44 H 0.10 2.45 7.03 -2.39 -0.02 2.43 16 45 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 46 H 0.16 1.41 8.06 -2.91 -0.02 1.39 16 47 H 0.15 1.71 8.06 -2.91 -0.02 1.69 16 Total: -1.00 -69.94 383.84 1.32 -68.62 By element: Atomic # 1 Polarization: 36.31 SS G_CDS: -0.77 Total: 35.53 kcal Atomic # 6 Polarization: 5.14 SS G_CDS: 6.55 Total: 11.70 kcal Atomic # 7 Polarization: -123.68 SS G_CDS: -5.43 Total: -129.11 kcal Atomic # 8 Polarization: -33.90 SS G_CDS: -1.06 Total: -34.96 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.22 kcal Total: -69.94 1.32 -68.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996781247.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.774 kcal (2) G-P(sol) polarization free energy of solvation -69.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds