Wall clock time and date at job start Wed Apr 1 2020 05:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35957 * 116.99457 * 2 1 4 4 C 1.38747 * 119.97948 * 180.02562 * 3 2 1 5 5 C 1.38060 * 120.02421 * 179.97438 * 4 3 2 6 6 C 1.38920 * 119.97619 * 359.97438 * 5 4 3 7 7 N 1.39862 * 120.01897 * 180.02562 * 6 5 4 8 8 C 1.34784 * 120.00243 * 27.90441 * 7 6 5 9 9 O 1.21383 * 119.99552 * 5.19592 * 8 7 6 10 10 C 1.49331 * 119.99988 * 185.19869 * 8 7 6 11 11 O 1.21361 * 120.00312 * 7.04994 * 10 8 7 12 12 N 1.34783 * 119.99590 * 187.05839 * 10 8 7 13 13 C 1.46924 * 120.62766 * 176.44472 * 12 10 8 14 14 C 1.53190 * 108.89246 * 233.68016 * 13 12 10 15 15 C 1.53042 * 109.31299 * 305.29409 * 14 13 12 16 16 C 1.53043 * 109.53767 * 61.36465 * 15 14 13 17 17 H 1.08998 * 109.49782 * 58.58506 * 16 15 14 18 18 N 1.46493 * 109.49714 * 178.65429 * 16 15 14 19 19 C 1.36935 * 120.00169 * 204.99995 * 18 16 15 20 20 H 1.08000 * 119.99877 * 0.02562 * 19 18 16 21 21 C 1.38809 * 120.00272 * 179.97438 * 19 18 16 22 22 N 1.31611 * 120.00252 * 0.02562 * 21 19 18 23 23 Si 1.86809 * 119.99822 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.46849 * 90.00475 * 23 21 19 25 25 H 1.48497 * 109.46949 * 209.99957 * 23 21 19 26 26 H 1.48492 * 109.47403 * 330.00359 * 23 21 19 27 27 C 1.47202 * 120.81431 * 356.58523 * 12 10 8 28 28 C 1.38912 * 119.95924 * 0.27327 * 6 5 4 29 29 C 1.38058 * 119.98022 * 359.47117 * 28 6 5 30 30 H 1.09002 * 109.46441 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47061 * 299.99533 * 1 2 3 32 32 H 1.09000 * 109.47221 * 59.99990 * 1 2 3 33 33 H 1.08010 * 119.98728 * 0.02562 * 4 3 2 34 34 H 1.08001 * 120.00982 * 179.97438 * 5 4 3 35 35 H 0.97007 * 119.99995 * 207.90705 * 7 6 5 36 36 H 1.08996 * 109.58771 * 113.82025 * 13 12 10 37 37 H 1.09005 * 109.58845 * 353.53716 * 13 12 10 38 38 H 1.09001 * 109.50140 * 65.24629 * 14 13 12 39 39 H 1.09000 * 109.49823 * 185.31454 * 14 13 12 40 40 H 1.09001 * 109.46382 * 181.38930 * 15 14 13 41 41 H 1.09002 * 109.45820 * 301.34956 * 15 14 13 42 42 H 0.97007 * 120.00123 * 24.99805 * 18 16 15 43 43 H 0.97003 * 120.00566 * 180.02562 * 22 21 19 44 44 H 1.09000 * 109.53605 * 6.53772 * 27 12 10 45 45 H 1.08999 * 109.55875 * 246.15735 * 27 12 10 46 46 H 1.08007 * 120.01250 * 179.70181 * 28 6 5 47 47 H 1.08003 * 119.98832 * 180.25207 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 3.4318 1.2837 -0.0005 5 6 4.0594 2.5134 -0.0011 6 6 3.3031 3.6787 -0.0016 7 7 3.9380 4.9249 -0.0027 8 6 5.1628 5.0568 -0.5495 9 8 5.6751 4.1183 -1.1241 10 6 5.8895 6.3574 -0.4483 11 8 5.4370 7.2540 0.2330 12 7 7.0480 6.5356 -1.1138 13 6 7.7346 7.8342 -1.0870 14 6 7.9907 8.2898 -2.5270 15 6 8.7529 7.1945 -3.2763 16 6 7.9083 5.9189 -3.3162 17 1 6.9572 6.1274 -3.8062 18 7 8.6250 4.8810 -4.0614 19 6 7.9290 3.8712 -4.6705 20 1 6.8517 3.8402 -4.6019 21 6 8.6081 2.8881 -5.3770 22 7 9.9210 2.9261 -5.4610 23 14 7.6586 1.5102 -6.2073 24 1 7.3091 1.9149 -7.5927 25 1 8.4967 0.2850 -6.2461 26 1 6.4152 1.2355 -5.4434 27 6 7.6512 5.4365 -1.8851 28 6 1.9159 3.6054 0.0041 29 6 1.2901 2.3748 -0.0007 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 4.0196 0.3776 -0.0014 34 1 5.1379 2.5694 -0.0011 35 1 3.4968 5.6943 0.3901 36 1 8.6839 7.7348 -0.5608 37 1 7.1095 8.5676 -0.5774 38 1 7.0389 8.4761 -3.0244 39 1 8.5824 9.2051 -2.5192 40 1 8.9581 7.5262 -4.2942 41 1 9.6935 6.9913 -2.7642 42 1 9.5927 4.9091 -4.1233 43 1 10.3955 2.2394 -5.9551 44 1 6.9691 4.5865 -1.9030 45 1 8.5939 5.1416 -1.4240 46 1 1.3271 4.5108 0.0086 47 1 0.2115 2.3177 -0.0003 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999626312.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:39 Heat of formation + Delta-G solvation = -35.056423 kcal Electronic energy + Delta-G solvation = -30715.897840 eV Core-core repulsion = 26479.697804 eV Total energy + Delta-G solvation = -4236.200035 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.26135 -40.18161 -39.04872 -37.52843 -37.39099 -34.78122 -34.19841 -32.37673 -31.29911 -31.19819 -29.48582 -28.22032 -27.54115 -26.06898 -24.12430 -23.73576 -23.12348 -22.16835 -21.31113 -20.33837 -19.57546 -18.39756 -17.87034 -17.38409 -17.05438 -16.53606 -16.23520 -15.93457 -15.86734 -15.23813 -14.84221 -14.68859 -14.46567 -14.28730 -13.91465 -13.69455 -13.65946 -13.51505 -13.32420 -13.09162 -12.96213 -12.65156 -12.55993 -12.37824 -12.12527 -11.66544 -11.50826 -11.18025 -11.02444 -10.98477 -10.80668 -10.60581 -10.54530 -10.25553 -10.17295 -9.97797 -9.65004 -9.20796 -9.13075 -8.70525 -8.48764 -7.86075 -6.96725 -5.75296 -3.04593 0.96050 1.18727 1.63986 2.27402 3.09322 3.17773 3.46103 3.50353 3.52825 3.55900 3.67010 4.26113 4.56375 4.62568 4.68958 4.83236 4.88688 5.04769 5.08367 5.12398 5.19953 5.22454 5.25489 5.37260 5.50119 5.58612 5.70089 5.74180 5.81019 5.82030 5.91429 6.01215 6.10053 6.12037 6.17129 6.23048 6.26634 6.34218 6.50228 6.58145 6.68643 6.88835 6.97941 7.02547 7.21621 7.44678 7.75513 7.79792 8.00206 8.42677 9.54798 10.08307 10.43645 11.47073 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.007809 B = 0.003752 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3584.824393 B = 7460.700216 C =10661.206307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.317 6.317 3 C 0.110 3.890 4 C -0.126 4.126 5 C -0.082 4.082 6 C 0.110 3.890 7 N -0.643 5.643 8 C 0.504 3.496 9 O -0.468 6.468 10 C 0.507 3.493 11 O -0.541 6.541 12 N -0.565 5.565 13 C 0.107 3.893 14 C -0.128 4.128 15 C -0.130 4.130 16 C 0.171 3.829 17 H 0.048 0.952 18 N -0.716 5.716 19 C -0.238 4.238 20 H 0.072 0.928 21 C -0.010 4.010 22 N -0.933 5.933 23 Si 0.904 3.096 24 H -0.290 1.290 25 H -0.291 1.291 26 H -0.280 1.280 27 C 0.026 3.974 28 C -0.105 4.105 29 C -0.189 4.189 30 H 0.098 0.902 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.137 0.863 34 H 0.151 0.849 35 H 0.420 0.580 36 H 0.072 0.928 37 H 0.089 0.911 38 H 0.065 0.935 39 H 0.074 0.926 40 H 0.067 0.933 41 H 0.061 0.939 42 H 0.385 0.615 43 H 0.255 0.745 44 H 0.155 0.845 45 H 0.064 0.936 46 H 0.130 0.870 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.841 4.252 14.113 21.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.231 6.231 3 C 0.065 3.935 4 C -0.146 4.146 5 C -0.102 4.102 6 C 0.016 3.984 7 N -0.289 5.289 8 C 0.288 3.712 9 O -0.341 6.341 10 C 0.289 3.711 11 O -0.420 6.420 12 N -0.297 5.297 13 C -0.015 4.015 14 C -0.167 4.167 15 C -0.168 4.168 16 C 0.060 3.940 17 H 0.066 0.934 18 N -0.356 5.356 19 C -0.369 4.369 20 H 0.090 0.910 21 C -0.206 4.206 22 N -0.581 5.581 23 Si 0.735 3.265 24 H -0.218 1.218 25 H -0.218 1.218 26 H -0.205 1.205 27 C -0.097 4.097 28 C -0.126 4.126 29 C -0.208 4.208 30 H 0.117 0.883 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.155 0.845 34 H 0.169 0.831 35 H 0.258 0.742 36 H 0.090 0.910 37 H 0.108 0.892 38 H 0.084 0.916 39 H 0.092 0.908 40 H 0.086 0.914 41 H 0.080 0.920 42 H 0.219 0.781 43 H 0.065 0.935 44 H 0.171 0.829 45 H 0.083 0.917 46 H 0.148 0.852 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -15.658 3.760 13.955 21.309 hybrid contribution -0.500 -0.241 -0.410 0.690 sum -16.158 3.519 13.546 21.377 Atomic orbital electron populations 1.23041 0.78611 1.03868 1.01254 1.86098 1.21191 1.26871 1.88913 1.19053 0.92368 0.84155 0.97961 1.20387 0.91208 0.98548 1.04419 1.21210 1.01573 0.89840 0.97612 1.17655 0.91439 0.84807 1.04464 1.43127 1.17457 1.10773 1.57561 1.20506 0.82107 0.89742 0.78893 1.90491 1.64435 1.40832 1.38384 1.19681 0.82418 0.87446 0.81530 1.90717 1.67465 1.43177 1.40608 1.48349 1.20658 1.14130 1.46539 1.21760 0.97333 0.84593 0.97855 1.21868 1.01213 0.98719 0.94852 1.21886 0.98967 0.95462 1.00504 1.20446 0.95221 0.88230 0.90126 0.93353 1.42348 1.06282 1.27161 1.59820 1.19252 0.91228 1.01629 1.24778 0.91046 1.24711 0.95510 0.99183 1.01183 1.69655 1.05712 1.36177 1.46589 0.86227 0.78963 0.81897 0.79430 1.21786 1.21754 1.20514 1.24525 1.01220 0.91065 0.92903 1.20605 0.92096 0.97984 1.01869 1.20967 0.99904 0.91586 1.08337 0.88344 0.92744 0.92655 0.84528 0.83108 0.74249 0.91001 0.89240 0.91620 0.90756 0.91384 0.91996 0.78082 0.93521 0.82860 0.91733 0.85236 0.85086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.32 -3.53 10.50 -19.60 -0.21 -3.74 16 3 C 0.11 1.31 6.69 -39.21 -0.26 1.05 16 4 C -0.13 -1.64 9.98 -39.46 -0.39 -2.03 16 5 C -0.08 -1.14 8.68 -39.39 -0.34 -1.48 16 6 C 0.11 1.38 6.38 -83.69 -0.53 0.85 16 7 N -0.64 -7.91 5.34 -10.27 -0.05 -7.96 16 8 C 0.50 7.65 7.59 -11.64 -0.09 7.57 16 9 O -0.47 -8.39 10.36 5.47 0.06 -8.33 16 10 C 0.51 7.86 7.76 -11.64 -0.09 7.77 16 11 O -0.54 -8.59 15.94 5.49 0.09 -8.50 16 12 N -0.56 -8.83 2.98 -173.10 -0.52 -9.35 16 13 C 0.11 1.40 6.41 -3.71 -0.02 1.38 16 14 C -0.13 -1.64 6.08 -26.61 -0.16 -1.80 16 15 C -0.13 -2.08 5.35 -26.69 -0.14 -2.22 16 16 C 0.17 3.38 2.92 -67.81 -0.20 3.18 16 17 H 0.05 1.02 8.08 -51.93 -0.42 0.60 16 18 N -0.72 -17.69 5.12 -53.31 -0.27 -17.96 16 19 C -0.24 -6.61 9.93 -15.06 -0.15 -6.75 16 20 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 21 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 22 N -0.93 -28.06 13.06 55.49 0.72 -27.33 16 23 Si 0.90 22.76 29.55 -169.99 -5.02 17.74 16 24 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 25 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 26 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 27 C 0.03 0.47 5.85 -3.56 -0.02 0.45 16 28 C -0.11 -1.08 9.94 -39.40 -0.39 -1.47 16 29 C -0.19 -1.90 9.03 -39.46 -0.36 -2.26 16 30 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.05 0.29 7.66 -51.93 -0.40 -0.10 16 32 H 0.05 0.33 7.66 -51.93 -0.40 -0.06 16 33 H 0.14 1.64 8.06 -52.48 -0.42 1.22 16 34 H 0.15 2.27 6.00 -52.49 -0.31 1.95 16 35 H 0.42 4.19 8.31 -40.82 -0.34 3.85 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.09 1.13 7.02 -51.93 -0.36 0.76 16 38 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.39 10.05 7.80 -40.82 -0.32 9.73 16 43 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 44 H 0.16 3.16 3.77 -56.97 -0.21 2.95 16 45 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 46 H 0.13 0.99 8.06 -52.48 -0.42 0.56 16 47 H 0.13 0.96 6.29 -52.48 -0.33 0.63 16 LS Contribution 383.90 15.07 5.79 5.79 Total: -1.00 -32.78 383.90 -8.13 -40.91 By element: Atomic # 1 Polarization: 20.17 SS G_CDS: -6.45 Total: 13.72 kcal Atomic # 6 Polarization: 7.28 SS G_CDS: -2.26 Total: 5.02 kcal Atomic # 7 Polarization: -62.48 SS G_CDS: -0.12 Total: -62.60 kcal Atomic # 8 Polarization: -20.51 SS G_CDS: -0.06 Total: -20.57 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -5.02 Total: 17.74 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.78 -8.13 -40.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999626312.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.852 kcal (2) G-P(sol) polarization free energy of solvation -32.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds