Wall clock time and date at job start Wed Apr 1 2020 05:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35957 * 116.99457 * 2 1 4 4 C 1.38747 * 119.97948 * 180.02562 * 3 2 1 5 5 C 1.38060 * 120.02421 * 179.97438 * 4 3 2 6 6 C 1.38920 * 119.97619 * 359.97438 * 5 4 3 7 7 N 1.39862 * 120.01897 * 180.02562 * 6 5 4 8 8 C 1.34784 * 120.00243 * 27.90441 * 7 6 5 9 9 O 1.21383 * 119.99552 * 5.19592 * 8 7 6 10 10 C 1.49331 * 119.99988 * 185.19869 * 8 7 6 11 11 O 1.21361 * 120.00312 * 7.04994 * 10 8 7 12 12 N 1.34783 * 119.99590 * 187.05839 * 10 8 7 13 13 C 1.46924 * 120.62766 * 176.44472 * 12 10 8 14 14 C 1.53190 * 108.89246 * 233.68016 * 13 12 10 15 15 C 1.53042 * 109.31299 * 305.29409 * 14 13 12 16 16 C 1.53043 * 109.53767 * 61.36465 * 15 14 13 17 17 H 1.08998 * 109.49782 * 58.58506 * 16 15 14 18 18 N 1.46493 * 109.49714 * 178.65429 * 16 15 14 19 19 C 1.36935 * 120.00169 * 204.99995 * 18 16 15 20 20 H 1.08000 * 119.99877 * 0.02562 * 19 18 16 21 21 C 1.38809 * 120.00272 * 179.97438 * 19 18 16 22 22 N 1.31611 * 120.00252 * 0.02562 * 21 19 18 23 23 Si 1.86809 * 119.99822 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.46849 * 90.00475 * 23 21 19 25 25 H 1.48497 * 109.46949 * 209.99957 * 23 21 19 26 26 H 1.48492 * 109.47403 * 330.00359 * 23 21 19 27 27 C 1.47202 * 120.81431 * 356.58523 * 12 10 8 28 28 C 1.38912 * 119.95924 * 0.27327 * 6 5 4 29 29 C 1.38058 * 119.98022 * 359.47117 * 28 6 5 30 30 H 1.09002 * 109.46441 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47061 * 299.99533 * 1 2 3 32 32 H 1.09000 * 109.47221 * 59.99990 * 1 2 3 33 33 H 1.08010 * 119.98728 * 0.02562 * 4 3 2 34 34 H 1.08001 * 120.00982 * 179.97438 * 5 4 3 35 35 H 0.97007 * 119.99995 * 207.90705 * 7 6 5 36 36 H 1.08996 * 109.58771 * 113.82025 * 13 12 10 37 37 H 1.09005 * 109.58845 * 353.53716 * 13 12 10 38 38 H 1.09001 * 109.50140 * 65.24629 * 14 13 12 39 39 H 1.09000 * 109.49823 * 185.31454 * 14 13 12 40 40 H 1.09001 * 109.46382 * 181.38930 * 15 14 13 41 41 H 1.09002 * 109.45820 * 301.34956 * 15 14 13 42 42 H 0.97007 * 120.00123 * 24.99805 * 18 16 15 43 43 H 0.97003 * 120.00566 * 180.02562 * 22 21 19 44 44 H 1.09000 * 109.53605 * 6.53772 * 27 12 10 45 45 H 1.08999 * 109.55875 * 246.15735 * 27 12 10 46 46 H 1.08007 * 120.01250 * 179.70181 * 28 6 5 47 47 H 1.08003 * 119.98832 * 180.25207 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 3.4318 1.2837 -0.0005 5 6 4.0594 2.5134 -0.0011 6 6 3.3031 3.6787 -0.0016 7 7 3.9380 4.9249 -0.0027 8 6 5.1628 5.0568 -0.5495 9 8 5.6751 4.1183 -1.1241 10 6 5.8895 6.3574 -0.4483 11 8 5.4370 7.2540 0.2330 12 7 7.0480 6.5356 -1.1138 13 6 7.7346 7.8342 -1.0870 14 6 7.9907 8.2898 -2.5270 15 6 8.7529 7.1945 -3.2763 16 6 7.9083 5.9189 -3.3162 17 1 6.9572 6.1274 -3.8062 18 7 8.6250 4.8810 -4.0614 19 6 7.9290 3.8712 -4.6705 20 1 6.8517 3.8402 -4.6019 21 6 8.6081 2.8881 -5.3770 22 7 9.9210 2.9261 -5.4610 23 14 7.6586 1.5102 -6.2073 24 1 7.3091 1.9149 -7.5927 25 1 8.4967 0.2850 -6.2461 26 1 6.4152 1.2355 -5.4434 27 6 7.6512 5.4365 -1.8851 28 6 1.9159 3.6054 0.0041 29 6 1.2901 2.3748 -0.0007 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 4.0196 0.3776 -0.0014 34 1 5.1379 2.5694 -0.0011 35 1 3.4968 5.6943 0.3901 36 1 8.6839 7.7348 -0.5608 37 1 7.1095 8.5676 -0.5774 38 1 7.0389 8.4761 -3.0244 39 1 8.5824 9.2051 -2.5192 40 1 8.9581 7.5262 -4.2942 41 1 9.6935 6.9913 -2.7642 42 1 9.5927 4.9091 -4.1233 43 1 10.3955 2.2394 -5.9551 44 1 6.9691 4.5865 -1.9030 45 1 8.5939 5.1416 -1.4240 46 1 1.3271 4.5108 0.0086 47 1 0.2115 2.3177 -0.0003 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999626312.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:38 Heat of formation + Delta-G solvation = -57.853317 kcal Electronic energy + Delta-G solvation = -30716.886387 eV Core-core repulsion = 26479.697804 eV Total energy + Delta-G solvation = -4237.188583 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.42165 -41.13805 -40.15042 -38.88539 -38.39096 -36.20883 -35.59398 -33.84953 -32.91735 -32.16179 -30.41277 -29.93726 -28.25742 -27.23278 -25.94880 -25.03367 -24.06528 -23.37787 -22.53404 -21.64460 -20.80994 -19.31764 -19.12982 -18.89290 -18.50048 -17.73542 -17.30727 -16.98152 -16.65200 -16.59352 -16.40905 -15.86566 -15.72164 -15.45653 -15.33952 -15.28685 -14.82922 -14.74491 -14.38412 -14.22827 -13.97333 -13.87138 -13.76972 -13.58736 -13.20548 -12.90929 -12.86609 -12.55716 -12.47504 -12.41966 -12.17822 -11.99738 -11.89224 -11.84198 -11.62425 -11.47527 -11.13189 -11.08979 -10.19299 -9.99814 -9.87523 -8.98838 -8.79267 -7.94992 -5.23131 -0.11962 0.28613 0.56998 1.14877 1.45063 1.46687 1.55476 1.97404 2.28925 2.40597 2.56488 2.73380 3.08509 3.38943 3.77026 3.79837 3.88306 3.98995 4.00379 4.14736 4.20801 4.29999 4.35355 4.36519 4.41767 4.43653 4.47214 4.62535 4.71692 4.74065 4.81180 4.88152 4.90109 4.97336 5.03148 5.09809 5.17875 5.24749 5.27260 5.34553 5.44268 5.53286 5.55672 5.76711 5.95763 6.12089 6.28237 6.42388 6.61929 6.82410 7.34669 8.06560 8.31516 9.28017 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.007809 B = 0.003752 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3584.824393 B = 7460.700216 C =10661.206307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.337 6.337 3 C 0.107 3.893 4 C -0.149 4.149 5 C -0.101 4.101 6 C 0.089 3.911 7 N -0.624 5.624 8 C 0.500 3.500 9 O -0.502 6.502 10 C 0.511 3.489 11 O -0.540 6.540 12 N -0.567 5.567 13 C 0.103 3.897 14 C -0.117 4.117 15 C -0.122 4.122 16 C 0.168 3.832 17 H 0.033 0.967 18 N -0.727 5.727 19 C -0.235 4.235 20 H 0.067 0.933 21 C -0.067 4.067 22 N -0.965 5.965 23 Si 0.962 3.038 24 H -0.285 1.285 25 H -0.293 1.293 26 H -0.277 1.277 27 C 0.041 3.959 28 C -0.092 4.092 29 C -0.182 4.182 30 H 0.115 0.885 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.132 0.868 34 H 0.128 0.872 35 H 0.432 0.568 36 H 0.087 0.913 37 H 0.102 0.898 38 H 0.063 0.937 39 H 0.110 0.890 40 H 0.062 0.938 41 H 0.066 0.934 42 H 0.376 0.624 43 H 0.251 0.749 44 H 0.136 0.864 45 H 0.057 0.943 46 H 0.165 0.835 47 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.452 5.721 15.026 24.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.251 6.251 3 C 0.061 3.939 4 C -0.168 4.168 5 C -0.121 4.121 6 C -0.004 4.004 7 N -0.270 5.270 8 C 0.284 3.716 9 O -0.379 6.379 10 C 0.293 3.707 11 O -0.419 6.419 12 N -0.299 5.299 13 C -0.018 4.018 14 C -0.155 4.155 15 C -0.161 4.161 16 C 0.058 3.942 17 H 0.051 0.949 18 N -0.366 5.366 19 C -0.367 4.367 20 H 0.085 0.915 21 C -0.259 4.259 22 N -0.616 5.616 23 Si 0.792 3.208 24 H -0.212 1.212 25 H -0.219 1.219 26 H -0.203 1.203 27 C -0.083 4.083 28 C -0.112 4.112 29 C -0.201 4.201 30 H 0.134 0.866 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.150 0.850 34 H 0.146 0.854 35 H 0.272 0.728 36 H 0.105 0.895 37 H 0.120 0.880 38 H 0.081 0.919 39 H 0.128 0.872 40 H 0.080 0.920 41 H 0.084 0.916 42 H 0.209 0.791 43 H 0.060 0.940 44 H 0.153 0.847 45 H 0.075 0.925 46 H 0.182 0.818 47 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -18.339 5.285 14.917 24.224 hybrid contribution 0.160 -0.696 -0.600 0.932 sum -18.179 4.589 14.318 23.591 Atomic orbital electron populations 1.23383 0.76240 1.05614 1.02555 1.86079 1.23693 1.26663 1.88694 1.19176 0.92069 0.85293 0.97339 1.20430 0.92405 0.98152 1.05814 1.21094 1.00780 0.91077 0.99147 1.17824 0.92512 0.84174 1.05914 1.42981 1.16443 1.11293 1.56327 1.20555 0.82873 0.89266 0.78953 1.90494 1.65394 1.41732 1.40242 1.19677 0.82254 0.87456 0.81311 1.90712 1.67409 1.43220 1.40603 1.48287 1.20893 1.14405 1.46268 1.22006 0.98068 0.83384 0.98372 1.21829 1.01133 0.98657 0.93881 1.21791 0.98854 0.94451 1.00955 1.20617 0.94809 0.88768 0.89974 0.94877 1.42469 1.05922 1.27711 1.60531 1.19483 0.91191 1.02095 1.23886 0.91542 1.25398 0.96355 1.01551 1.02644 1.69782 1.06910 1.36966 1.47940 0.85304 0.77714 0.79227 0.78577 1.21168 1.21923 1.20268 1.23988 1.00552 0.91450 0.92266 1.20980 0.91041 0.99539 0.99629 1.21353 1.01520 0.90596 1.06644 0.86629 0.90981 0.91640 0.85000 0.85425 0.72767 0.89492 0.87986 0.91871 0.87215 0.91953 0.91564 0.79115 0.93975 0.84740 0.92486 0.81798 0.81654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 113.37 1.11 1.29 16 2 O -0.34 -7.10 10.50 -93.06 -0.98 -8.07 16 3 C 0.11 2.44 6.69 22.51 0.15 2.59 16 4 C -0.15 -4.01 9.98 22.35 0.22 -3.79 16 5 C -0.10 -2.93 8.68 22.39 0.19 -2.73 16 6 C 0.09 2.19 6.38 38.18 0.24 2.44 16 7 N -0.62 -14.91 5.34 -304.76 -1.63 -16.54 16 8 C 0.50 15.35 7.59 87.23 0.66 16.02 16 9 O -0.50 -18.91 10.36 -3.35 -0.03 -18.95 16 10 C 0.51 15.46 7.76 87.23 0.68 16.13 16 11 O -0.54 -16.19 15.94 -3.28 -0.05 -16.24 16 12 N -0.57 -17.31 2.98 -819.91 -2.45 -19.76 16 13 C 0.10 2.45 6.41 86.36 0.55 3.00 16 14 C -0.12 -2.69 6.08 30.67 0.19 -2.50 16 15 C -0.12 -3.80 5.35 30.62 0.16 -3.63 16 16 C 0.17 6.74 2.92 45.07 0.13 6.87 16 17 H 0.03 1.42 8.08 -2.39 -0.02 1.40 16 18 N -0.73 -36.91 5.12 -322.58 -1.65 -38.56 16 19 C -0.23 -13.37 9.93 84.03 0.83 -12.53 16 20 H 0.07 3.78 7.83 -2.91 -0.02 3.76 16 21 C -0.07 -3.92 5.50 84.86 0.47 -3.45 16 22 N -0.97 -59.43 13.06 21.65 0.28 -59.15 16 23 Si 0.96 47.78 29.55 68.60 2.03 49.81 16 24 H -0.28 -13.75 7.11 99.48 0.71 -13.05 16 25 H -0.29 -14.50 7.11 99.48 0.71 -13.80 16 26 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 27 C 0.04 1.54 5.85 86.31 0.50 2.05 16 28 C -0.09 -1.65 9.94 22.39 0.22 -1.43 16 29 C -0.18 -3.17 9.03 22.35 0.20 -2.97 16 30 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.07 0.53 7.66 -2.39 -0.02 0.52 16 32 H 0.06 0.59 7.66 -2.39 -0.02 0.57 16 33 H 0.13 3.46 8.06 -2.91 -0.02 3.44 16 34 H 0.13 4.23 6.00 -2.91 -0.02 4.21 16 35 H 0.43 7.86 8.31 -92.70 -0.77 7.09 16 36 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.10 2.25 7.02 -2.38 -0.02 2.24 16 38 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.11 1.84 8.14 -2.39 -0.02 1.83 16 40 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 42 H 0.38 20.23 7.80 -92.70 -0.72 19.51 16 43 H 0.25 15.03 8.31 -92.71 -0.77 14.26 16 44 H 0.14 5.81 3.77 -82.22 -0.31 5.50 16 45 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 46 H 0.16 1.79 8.06 -2.91 -0.02 1.76 16 47 H 0.17 1.69 6.29 -2.91 -0.02 1.68 16 Total: -1.00 -72.95 383.90 1.28 -71.67 By element: Atomic # 1 Polarization: 39.20 SS G_CDS: -0.77 Total: 38.44 kcal Atomic # 6 Polarization: 10.82 SS G_CDS: 6.53 Total: 17.34 kcal Atomic # 7 Polarization: -128.56 SS G_CDS: -5.44 Total: -134.00 kcal Atomic # 8 Polarization: -42.19 SS G_CDS: -1.06 Total: -43.26 kcal Atomic # 14 Polarization: 47.78 SS G_CDS: 2.03 Total: 49.81 kcal Total: -72.95 1.28 -71.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999626312.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.816 kcal (2) G-P(sol) polarization free energy of solvation -72.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds