Wall clock time and date at job start Wed Apr 1 2020 05:26:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35529 * 116.99757 * 2 1 4 4 C 1.38815 * 120.89607 * 0.27792 * 3 2 1 5 5 C 1.38712 * 119.20103 * 180.29618 * 4 3 2 6 6 O 1.35526 * 119.47678 * 179.71939 * 5 4 3 7 7 N 1.32596 * 121.05261 * 359.69195 * 5 4 3 8 8 C 1.31617 * 121.97389 * 0.02562 * 7 5 4 9 9 C 1.39539 * 120.66952 * 359.97438 * 8 7 5 10 10 C 1.47351 * 120.55249 * 180.02562 * 9 8 7 11 11 O 1.21613 * 119.99872 * 180.02562 * 10 9 8 12 12 N 1.34774 * 120.00100 * 0.27266 * 10 9 8 13 13 C 1.46501 * 120.00062 * 179.72776 * 12 10 9 14 14 H 1.09004 * 115.54685 * 9.31492 * 13 12 10 15 15 C 1.53025 * 117.50082 * 223.58547 * 13 12 10 16 16 C 1.52811 * 117.50251 * 154.99882 * 13 12 10 17 17 C 1.53191 * 117.71421 * 359.85858 * 16 13 12 18 18 C 1.53352 * 108.76688 * 158.88596 * 17 16 13 19 19 N 1.46842 * 108.81546 * 51.30917 * 18 17 16 20 20 C 1.36937 * 120.38141 * 123.11611 * 19 18 17 21 21 H 1.08001 * 120.00084 * 208.88379 * 20 19 18 22 22 C 1.38820 * 120.00146 * 28.88897 * 20 19 18 23 23 N 1.31620 * 119.99505 * 17.85174 * 22 20 19 24 24 Si 1.86799 * 120.00113 * 197.84893 * 22 20 19 25 25 H 1.48497 * 109.46907 * 90.00151 * 24 22 20 26 26 H 1.48497 * 109.47172 * 209.99838 * 24 22 20 27 27 H 1.48495 * 109.47131 * 330.00071 * 24 22 20 28 28 C 1.46846 * 119.23309 * 303.09764 * 19 18 17 29 29 C 1.53183 * 117.71628 * 215.09912 * 16 13 12 30 30 H 1.09008 * 109.47283 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47817 * 299.99704 * 1 2 3 32 32 H 1.08997 * 109.47316 * 60.00149 * 1 2 3 33 33 H 1.08003 * 120.40179 * 0.02562 * 4 3 2 34 34 H 0.96695 * 113.99560 * 269.97312 * 6 5 4 35 35 H 1.07993 * 119.66373 * 179.97438 * 8 7 5 36 36 H 0.96998 * 119.99747 * 359.72497 * 12 10 9 37 37 H 1.09003 * 117.50452 * 359.97438 * 15 13 12 38 38 H 1.09000 * 117.50267 * 145.04399 * 15 13 12 39 39 H 1.08995 * 109.58617 * 278.67033 * 17 16 13 40 40 H 1.08996 * 109.58497 * 39.10575 * 17 16 13 41 41 H 1.08996 * 109.58366 * 291.51070 * 18 17 16 42 42 H 1.09001 * 109.57528 * 171.10399 * 18 17 16 43 43 H 0.97001 * 119.99826 * 180.02562 * 23 22 20 44 44 H 1.08995 * 109.57869 * 297.10381 * 28 19 18 45 45 H 1.09008 * 109.57616 * 176.70532 * 28 19 18 46 46 H 1.08997 * 109.58811 * 320.90660 * 29 16 13 47 47 H 1.09004 * 109.58895 * 81.33276 * 29 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2076 0.0000 4 6 1.3064 2.3834 0.0058 5 6 1.9723 3.6002 -0.0007 6 8 1.2575 4.7517 -0.0009 7 7 3.2972 3.6549 -0.0061 8 6 4.0395 2.5680 -0.0062 9 6 3.4499 1.3033 0.0001 10 6 4.2835 0.0883 0.0006 11 8 3.7590 -1.0089 0.0056 12 7 5.6272 0.1929 0.0005 13 6 6.4560 -1.0151 0.0070 14 1 5.9217 -1.9526 -0.1475 15 6 7.6661 -1.0368 0.9433 16 6 7.8683 -0.9051 -0.5660 17 6 8.3132 0.4571 -1.1077 18 6 9.8459 0.5020 -1.1310 19 7 10.3442 -0.6913 -1.8267 20 6 11.1586 -0.5658 -2.9205 21 1 11.1537 -1.3261 -3.6875 22 6 11.9906 0.5386 -3.0433 23 7 12.2684 1.2738 -1.9875 24 14 12.7158 0.9812 -4.7069 25 1 11.7964 1.9059 -5.4174 26 1 14.0310 1.6429 -4.5133 27 1 12.8964 -0.2531 -5.5124 28 6 9.9593 -2.0207 -1.3358 29 6 8.4290 -2.1169 -1.3168 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 0.2269 2.3513 0.0108 34 1 1.0466 5.0834 -0.8843 35 1 5.1159 2.6560 -0.0112 36 1 6.0455 1.0680 -0.0039 37 1 7.8459 -0.1520 1.5541 38 1 7.9283 -1.9887 1.4051 39 1 7.9283 0.5918 -2.1184 40 1 7.9343 1.2487 -0.4614 41 1 10.2266 0.5150 -0.1098 42 1 10.1770 1.3969 -1.6579 43 1 12.8495 2.0458 -2.0734 44 1 10.3470 -2.1639 -0.3273 45 1 10.3653 -2.7860 -1.9975 46 1 8.1268 -3.0330 -0.8094 47 1 8.0503 -2.1208 -2.3389 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016829858.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:26:06 Heat of formation + Delta-G solvation = -19.414968 kcal Electronic energy + Delta-G solvation = -30412.049157 eV Core-core repulsion = 26176.527386 eV Total energy + Delta-G solvation = -4235.521771 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.41452 -39.74721 -39.13071 -38.27557 -37.14304 -35.46045 -33.28169 -32.03373 -31.63647 -30.70827 -30.10322 -28.28357 -27.90507 -24.84882 -24.32980 -23.48169 -22.47555 -22.12966 -21.02544 -20.41469 -19.70988 -18.37489 -18.07947 -17.78493 -17.23752 -16.47840 -16.40400 -15.82579 -15.62303 -15.31015 -14.91572 -14.80401 -14.74859 -14.17140 -14.06085 -13.57787 -13.50533 -13.32145 -13.07164 -12.97350 -12.60335 -12.40015 -12.25350 -12.03027 -11.93953 -11.70421 -11.49426 -11.36165 -10.95913 -10.73723 -10.49639 -10.36244 -10.27539 -9.96008 -9.72613 -9.69695 -9.60538 -9.57001 -9.35038 -9.29144 -8.46062 -8.41885 -6.63483 -5.78546 -3.21472 0.16234 0.79181 2.55597 2.62920 2.99116 3.11013 3.38080 3.44227 3.45457 3.46431 4.04734 4.21616 4.25578 4.37592 4.50412 4.61513 4.68459 4.78595 4.92704 4.98773 5.02288 5.12375 5.15507 5.16306 5.30166 5.39594 5.52403 5.64651 5.79658 5.88898 6.06950 6.11315 6.12755 6.29197 6.45799 6.56772 6.58916 6.65364 6.68714 6.72074 6.84225 6.96661 7.01187 7.34434 7.41024 7.48901 7.65451 7.80643 8.19636 8.47086 9.22526 9.86093 10.42760 11.29188 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.014254 B = 0.002457 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1963.898752 B =11392.822403 C =12616.724594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.269 6.269 3 C 0.238 3.762 4 C -0.290 4.290 5 C 0.369 3.631 6 O -0.480 6.480 7 N -0.527 5.527 8 C 0.199 3.801 9 C -0.232 4.232 10 C 0.569 3.431 11 O -0.522 6.522 12 N -0.692 5.692 13 C 0.072 3.928 14 H 0.133 0.867 15 C -0.182 4.182 16 C -0.097 4.097 17 C -0.105 4.105 18 C 0.173 3.827 19 N -0.590 5.590 20 C -0.252 4.252 21 H 0.065 0.935 22 C 0.002 3.998 23 N -0.902 5.902 24 Si 0.901 3.099 25 H -0.288 1.288 26 H -0.292 1.292 27 H -0.279 1.279 28 C 0.149 3.851 29 C -0.098 4.098 30 H 0.108 0.892 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.152 0.848 34 H 0.407 0.593 35 H 0.173 0.827 36 H 0.399 0.601 37 H 0.093 0.907 38 H 0.097 0.903 39 H 0.062 0.938 40 H 0.043 0.957 41 H 0.018 0.982 42 H 0.090 0.910 43 H 0.253 0.747 44 H 0.020 0.980 45 H 0.055 0.945 46 H 0.053 0.947 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.998 2.080 5.050 24.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.177 6.177 3 C 0.182 3.818 4 C -0.312 4.312 5 C 0.192 3.808 6 O -0.288 6.288 7 N -0.249 5.249 8 C 0.040 3.960 9 C -0.238 4.238 10 C 0.355 3.645 11 O -0.398 6.398 12 N -0.342 5.342 13 C -0.034 4.034 14 H 0.150 0.850 15 C -0.220 4.220 16 C -0.099 4.099 17 C -0.145 4.145 18 C 0.047 3.953 19 N -0.312 5.312 20 C -0.382 4.382 21 H 0.082 0.918 22 C -0.196 4.196 23 N -0.546 5.546 24 Si 0.731 3.269 25 H -0.215 1.215 26 H -0.218 1.218 27 H -0.204 1.204 28 C 0.023 3.977 29 C -0.137 4.137 30 H 0.127 0.873 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.170 0.830 34 H 0.267 0.733 35 H 0.189 0.811 36 H 0.235 0.765 37 H 0.111 0.889 38 H 0.116 0.884 39 H 0.080 0.920 40 H 0.062 0.938 41 H 0.036 0.964 42 H 0.108 0.892 43 H 0.063 0.937 44 H 0.038 0.962 45 H 0.073 0.927 46 H 0.072 0.928 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -23.855 1.967 5.649 24.593 hybrid contribution -0.148 0.341 -1.180 1.237 sum -24.003 2.308 4.469 24.524 Atomic orbital electron populations 1.23293 0.77859 1.05001 1.01630 1.86402 1.21483 1.24495 1.85333 1.19122 0.90789 0.84923 0.86956 1.22094 1.02269 0.91601 1.15267 1.19010 0.86588 0.85020 0.90150 1.84699 1.71151 1.38674 1.34293 1.67233 1.06451 1.33155 1.18028 1.22712 0.99929 0.84884 0.88434 1.20523 0.91482 0.96002 1.15817 1.17557 0.81847 0.88088 0.76964 1.90819 1.72675 1.27235 1.49060 1.45284 1.05153 1.09418 1.74369 1.21872 0.86429 0.89252 1.05833 0.84970 1.23542 1.01354 1.03315 0.93835 1.21969 0.94795 0.98795 0.94295 1.21823 1.01503 0.91799 0.99344 1.20749 0.86624 0.92173 0.95717 1.43974 1.55072 0.99275 1.32854 1.19211 1.15128 1.07321 0.96524 0.91757 1.25046 0.97214 1.00381 0.97006 1.70035 1.38250 1.19314 1.26997 0.86309 0.78163 0.78375 0.84053 1.21464 1.21808 1.20449 1.20860 0.90843 0.89054 0.96991 1.21687 0.99089 0.93755 0.99182 0.87324 0.92107 0.92144 0.83046 0.73346 0.81062 0.76452 0.88851 0.88416 0.91980 0.93814 0.96370 0.89202 0.93654 0.96240 0.92681 0.92839 0.91822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.10 9.84 101.05 0.99 1.10 16 2 O -0.27 -3.08 8.71 -39.58 -0.34 -3.42 16 3 C 0.24 2.65 6.74 -38.36 -0.26 2.39 16 4 C -0.29 -2.53 9.02 -39.19 -0.35 -2.88 16 5 C 0.37 3.57 7.73 -17.05 -0.13 3.44 16 6 O -0.48 -3.68 13.54 -18.27 -0.25 -3.93 16 7 N -0.53 -5.92 10.37 -13.04 -0.14 -6.05 16 8 C 0.20 2.10 10.71 -17.16 -0.18 1.92 16 9 C -0.23 -2.78 5.90 -104.70 -0.62 -3.40 16 10 C 0.57 8.10 7.76 -12.55 -0.10 8.00 16 11 O -0.52 -9.09 14.84 -16.03 -0.24 -9.33 16 12 N -0.69 -9.03 5.30 -54.99 -0.29 -9.32 16 13 C 0.07 1.03 6.14 -68.01 -0.42 0.62 16 14 H 0.13 2.03 7.40 -51.93 -0.38 1.64 16 15 C -0.18 -2.59 9.86 -26.80 -0.26 -2.85 16 16 C -0.10 -1.57 1.94 -154.49 -0.30 -1.87 16 17 C -0.11 -1.87 5.37 -26.45 -0.14 -2.01 16 18 C 0.17 3.96 5.40 -3.67 -0.02 3.94 16 19 N -0.59 -14.40 2.94 -172.26 -0.51 -14.91 16 20 C -0.25 -6.81 9.54 -15.06 -0.14 -6.95 16 21 H 0.06 1.72 7.89 -52.49 -0.41 1.31 16 22 C 0.00 0.06 4.89 -17.43 -0.09 -0.03 16 23 N -0.90 -25.72 11.23 55.49 0.62 -25.10 16 24 Si 0.90 21.47 29.59 -169.99 -5.03 16.44 16 25 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 26 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 27 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 28 C 0.15 3.06 6.52 -3.68 -0.02 3.04 16 29 C -0.10 -1.67 5.83 -26.46 -0.15 -1.82 16 30 H 0.11 0.52 8.14 -51.92 -0.42 0.10 16 31 H 0.06 0.29 7.69 -51.93 -0.40 -0.11 16 32 H 0.06 0.27 7.72 -51.93 -0.40 -0.13 16 33 H 0.15 0.89 6.45 -52.48 -0.34 0.55 16 34 H 0.41 1.01 9.06 45.56 0.41 1.42 16 35 H 0.17 1.42 6.41 -52.49 -0.34 1.08 16 36 H 0.40 4.43 5.17 -40.82 -0.21 4.22 16 37 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 38 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 39 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.04 0.66 6.75 -51.93 -0.35 0.30 16 41 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 42 H 0.09 2.31 5.93 -51.93 -0.31 2.01 16 43 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 44 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 45 H 0.05 1.11 7.92 -51.92 -0.41 0.70 16 46 H 0.05 0.79 8.10 -51.93 -0.42 0.37 16 47 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 382.82 15.07 5.77 5.77 Total: -1.00 -34.85 382.82 -8.26 -43.11 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -5.66 Total: 4.13 kcal Atomic # 6 Polarization: 4.82 SS G_CDS: -2.20 Total: 2.62 kcal Atomic # 7 Polarization: -55.07 SS G_CDS: -0.31 Total: -55.38 kcal Atomic # 8 Polarization: -15.85 SS G_CDS: -0.83 Total: -16.68 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.03 Total: 16.44 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.85 -8.26 -43.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016829858.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.690 kcal (2) G-P(sol) polarization free energy of solvation -34.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds