Wall clock time and date at job start Wed Apr 1 2020 05:26:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35529 * 116.99757 * 2 1 4 4 C 1.38815 * 120.89607 * 0.27792 * 3 2 1 5 5 C 1.38712 * 119.20103 * 180.29618 * 4 3 2 6 6 O 1.35526 * 119.47678 * 179.71939 * 5 4 3 7 7 N 1.32596 * 121.05261 * 359.69195 * 5 4 3 8 8 C 1.31617 * 121.97389 * 0.02562 * 7 5 4 9 9 C 1.39539 * 120.66952 * 359.97438 * 8 7 5 10 10 C 1.47351 * 120.55249 * 180.02562 * 9 8 7 11 11 O 1.21613 * 119.99872 * 180.02562 * 10 9 8 12 12 N 1.34774 * 120.00100 * 0.27266 * 10 9 8 13 13 C 1.46501 * 120.00062 * 179.72776 * 12 10 9 14 14 H 1.09004 * 115.54685 * 9.31492 * 13 12 10 15 15 C 1.53025 * 117.50082 * 223.58547 * 13 12 10 16 16 C 1.52811 * 117.50251 * 154.99882 * 13 12 10 17 17 C 1.53191 * 117.71421 * 359.85858 * 16 13 12 18 18 C 1.53352 * 108.76688 * 158.88596 * 17 16 13 19 19 N 1.46842 * 108.81546 * 51.30917 * 18 17 16 20 20 C 1.36937 * 120.38141 * 123.11611 * 19 18 17 21 21 H 1.08001 * 120.00084 * 208.88379 * 20 19 18 22 22 C 1.38820 * 120.00146 * 28.88897 * 20 19 18 23 23 N 1.31620 * 119.99505 * 17.85174 * 22 20 19 24 24 Si 1.86799 * 120.00113 * 197.84893 * 22 20 19 25 25 H 1.48497 * 109.46907 * 90.00151 * 24 22 20 26 26 H 1.48497 * 109.47172 * 209.99838 * 24 22 20 27 27 H 1.48495 * 109.47131 * 330.00071 * 24 22 20 28 28 C 1.46846 * 119.23309 * 303.09764 * 19 18 17 29 29 C 1.53183 * 117.71628 * 215.09912 * 16 13 12 30 30 H 1.09008 * 109.47283 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47817 * 299.99704 * 1 2 3 32 32 H 1.08997 * 109.47316 * 60.00149 * 1 2 3 33 33 H 1.08003 * 120.40179 * 0.02562 * 4 3 2 34 34 H 0.96695 * 113.99560 * 269.97312 * 6 5 4 35 35 H 1.07993 * 119.66373 * 179.97438 * 8 7 5 36 36 H 0.96998 * 119.99747 * 359.72497 * 12 10 9 37 37 H 1.09003 * 117.50452 * 359.97438 * 15 13 12 38 38 H 1.09000 * 117.50267 * 145.04399 * 15 13 12 39 39 H 1.08995 * 109.58617 * 278.67033 * 17 16 13 40 40 H 1.08996 * 109.58497 * 39.10575 * 17 16 13 41 41 H 1.08996 * 109.58366 * 291.51070 * 18 17 16 42 42 H 1.09001 * 109.57528 * 171.10399 * 18 17 16 43 43 H 0.97001 * 119.99826 * 180.02562 * 23 22 20 44 44 H 1.08995 * 109.57869 * 297.10381 * 28 19 18 45 45 H 1.09008 * 109.57616 * 176.70532 * 28 19 18 46 46 H 1.08997 * 109.58811 * 320.90660 * 29 16 13 47 47 H 1.09004 * 109.58895 * 81.33276 * 29 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2076 0.0000 4 6 1.3064 2.3834 0.0058 5 6 1.9723 3.6002 -0.0007 6 8 1.2575 4.7517 -0.0009 7 7 3.2972 3.6549 -0.0061 8 6 4.0395 2.5680 -0.0062 9 6 3.4499 1.3033 0.0001 10 6 4.2835 0.0883 0.0006 11 8 3.7590 -1.0089 0.0056 12 7 5.6272 0.1929 0.0005 13 6 6.4560 -1.0151 0.0070 14 1 5.9217 -1.9526 -0.1475 15 6 7.6661 -1.0368 0.9433 16 6 7.8683 -0.9051 -0.5660 17 6 8.3132 0.4571 -1.1077 18 6 9.8459 0.5020 -1.1310 19 7 10.3442 -0.6913 -1.8267 20 6 11.1586 -0.5658 -2.9205 21 1 11.1537 -1.3261 -3.6875 22 6 11.9906 0.5386 -3.0433 23 7 12.2684 1.2738 -1.9875 24 14 12.7158 0.9812 -4.7069 25 1 11.7964 1.9059 -5.4174 26 1 14.0310 1.6429 -4.5133 27 1 12.8964 -0.2531 -5.5124 28 6 9.9593 -2.0207 -1.3358 29 6 8.4290 -2.1169 -1.3168 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 0.2269 2.3513 0.0108 34 1 1.0466 5.0834 -0.8843 35 1 5.1159 2.6560 -0.0112 36 1 6.0455 1.0680 -0.0039 37 1 7.8459 -0.1520 1.5541 38 1 7.9283 -1.9887 1.4051 39 1 7.9283 0.5918 -2.1184 40 1 7.9343 1.2487 -0.4614 41 1 10.2266 0.5150 -0.1098 42 1 10.1770 1.3969 -1.6579 43 1 12.8495 2.0458 -2.0734 44 1 10.3470 -2.1639 -0.3273 45 1 10.3653 -2.7860 -1.9975 46 1 8.1268 -3.0330 -0.8094 47 1 8.0503 -2.1208 -2.3389 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016829858.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:26:05 Heat of formation + Delta-G solvation = -45.678001 kcal Electronic energy + Delta-G solvation = -30413.188007 eV Core-core repulsion = 26176.527386 eV Total energy + Delta-G solvation = -4236.660621 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.19616 -40.88134 -39.84837 -39.50207 -37.84908 -37.08081 -34.61300 -33.37508 -32.72528 -31.71628 -31.61357 -29.84132 -28.50819 -26.22363 -25.67462 -24.20946 -24.03448 -23.24553 -22.53220 -21.58726 -20.36994 -19.81732 -19.12096 -18.67432 -18.18317 -17.92576 -17.10396 -16.95440 -16.79853 -16.35014 -16.07668 -15.81890 -15.70607 -15.47169 -15.37945 -15.09042 -14.86492 -14.65763 -14.15889 -14.11855 -13.75844 -13.67728 -13.30794 -13.04789 -12.99318 -12.88569 -12.59430 -12.57792 -12.51495 -12.48607 -12.27808 -11.96314 -11.75210 -11.36274 -11.33900 -11.20768 -10.69110 -10.59296 -10.45860 -10.30103 -10.12193 -9.61468 -8.59334 -7.83965 -5.29774 -0.60427 0.05262 1.47893 1.49520 1.57889 1.65340 1.96521 2.00233 2.40830 2.53429 2.62457 3.00610 3.30479 3.36785 3.49920 3.60273 3.68057 3.84751 3.89827 3.99968 4.03761 4.16625 4.17451 4.29457 4.31576 4.38322 4.55037 4.56585 4.69206 4.71275 4.74586 4.89189 4.92971 4.99002 5.03871 5.12136 5.13584 5.25432 5.33973 5.40781 5.50472 5.57397 5.68613 5.82487 6.05029 6.43650 6.45143 6.49589 6.72670 7.15095 7.19452 7.91780 8.42390 9.20793 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.014254 B = 0.002457 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1963.898752 B =11392.822403 C =12616.724594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.007 3.993 2 O -0.299 6.299 3 C 0.230 3.770 4 C -0.279 4.279 5 C 0.371 3.629 6 O -0.484 6.484 7 N -0.549 5.549 8 C 0.205 3.795 9 C -0.254 4.254 10 C 0.571 3.429 11 O -0.559 6.559 12 N -0.686 5.686 13 C 0.088 3.912 14 H 0.128 0.872 15 C -0.169 4.169 16 C -0.116 4.116 17 C -0.090 4.090 18 C 0.180 3.820 19 N -0.609 5.609 20 C -0.262 4.262 21 H 0.062 0.938 22 C -0.048 4.048 23 N -0.931 5.931 24 Si 0.963 3.037 25 H -0.285 1.285 26 H -0.295 1.295 27 H -0.271 1.271 28 C 0.146 3.854 29 C -0.087 4.087 30 H 0.118 0.882 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.181 0.819 34 H 0.429 0.571 35 H 0.188 0.812 36 H 0.409 0.591 37 H 0.102 0.898 38 H 0.110 0.890 39 H 0.051 0.949 40 H 0.073 0.927 41 H 0.000 1.000 42 H 0.055 0.945 43 H 0.250 0.750 44 H 0.018 0.982 45 H 0.051 0.949 46 H 0.081 0.919 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.232 2.459 5.237 26.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 O -0.208 6.208 3 C 0.174 3.826 4 C -0.301 4.301 5 C 0.195 3.805 6 O -0.296 6.296 7 N -0.272 5.272 8 C 0.046 3.954 9 C -0.261 4.261 10 C 0.359 3.641 11 O -0.438 6.438 12 N -0.336 5.336 13 C -0.018 4.018 14 H 0.145 0.855 15 C -0.207 4.207 16 C -0.117 4.117 17 C -0.129 4.129 18 C 0.054 3.946 19 N -0.332 5.332 20 C -0.392 4.392 21 H 0.080 0.920 22 C -0.244 4.244 23 N -0.577 5.577 24 Si 0.791 3.209 25 H -0.212 1.212 26 H -0.222 1.222 27 H -0.196 1.196 28 C 0.020 3.980 29 C -0.126 4.126 30 H 0.136 0.864 31 H 0.095 0.905 32 H 0.097 0.903 33 H 0.198 0.802 34 H 0.293 0.707 35 H 0.205 0.795 36 H 0.247 0.753 37 H 0.120 0.880 38 H 0.129 0.871 39 H 0.069 0.931 40 H 0.091 0.909 41 H 0.018 0.982 42 H 0.074 0.926 43 H 0.059 0.941 44 H 0.036 0.964 45 H 0.070 0.930 46 H 0.100 0.900 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -26.123 2.358 5.822 26.868 hybrid contribution 0.455 0.228 -1.216 1.318 sum -25.668 2.586 4.606 26.206 Atomic orbital electron populations 1.23612 0.75485 1.06307 1.03303 1.86365 1.24111 1.25041 1.85244 1.19320 0.90775 0.85662 0.86855 1.22264 1.03525 0.90278 1.14020 1.19207 0.86365 0.85896 0.89067 1.84655 1.70666 1.37952 1.36323 1.67285 1.07463 1.33369 1.19107 1.22903 1.00676 0.84265 0.87543 1.20445 0.91973 0.95434 1.18211 1.17866 0.81984 0.88337 0.75907 1.90792 1.73316 1.28735 1.50966 1.45219 1.04952 1.09499 1.73977 1.21681 0.85693 0.89646 1.04798 0.85474 1.23632 1.00203 1.04416 0.92479 1.21826 0.96735 0.97255 0.95899 1.21560 0.97518 0.94151 0.99709 1.20557 0.89857 0.90450 0.93742 1.44248 1.55149 1.01082 1.32699 1.19492 1.15112 1.07251 0.97376 0.92043 1.25740 0.98093 1.00589 0.99967 1.70175 1.39175 1.19685 1.28702 0.85338 0.77048 0.78112 0.80390 1.21205 1.22181 1.19601 1.20983 0.93366 0.87158 0.96466 1.21519 0.96116 0.95610 0.99328 0.86395 0.90508 0.90277 0.80150 0.70720 0.79496 0.75307 0.88006 0.87150 0.93069 0.90902 0.98198 0.92630 0.94107 0.96401 0.93048 0.90044 0.92785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.07 9.84 113.37 1.12 1.18 16 2 O -0.30 -6.52 8.71 -67.97 -0.59 -7.11 16 3 C 0.23 4.81 6.74 23.06 0.16 4.96 16 4 C -0.28 -4.21 9.02 22.52 0.20 -4.00 16 5 C 0.37 6.36 7.73 84.69 0.65 7.02 16 6 O -0.48 -6.14 13.54 -88.29 -1.20 -7.33 16 7 N -0.55 -11.43 10.37 -307.95 -3.19 -14.63 16 8 C 0.21 4.05 10.71 85.04 0.91 4.96 16 9 C -0.25 -5.84 5.90 -19.91 -0.12 -5.96 16 10 C 0.57 15.77 7.76 86.64 0.67 16.45 16 11 O -0.56 -19.30 14.84 16.29 0.24 -19.06 16 12 N -0.69 -16.90 5.30 -446.13 -2.36 -19.26 16 13 C 0.09 2.38 6.14 44.94 0.28 2.66 16 14 H 0.13 3.69 7.40 -2.39 -0.02 3.67 16 15 C -0.17 -4.42 9.86 30.55 0.30 -4.12 16 16 C -0.12 -3.57 1.94 -52.17 -0.10 -3.67 16 17 C -0.09 -3.15 5.37 30.78 0.17 -2.99 16 18 C 0.18 8.35 5.40 86.43 0.47 8.82 16 19 N -0.61 -30.20 2.94 -698.90 -2.05 -32.26 16 20 C -0.26 -14.39 9.54 84.04 0.80 -13.59 16 21 H 0.06 3.33 7.89 -2.91 -0.02 3.31 16 22 C -0.05 -2.68 4.89 84.86 0.41 -2.27 16 23 N -0.93 -54.53 11.23 21.65 0.24 -54.28 16 24 Si 0.96 44.79 29.59 68.60 2.03 46.82 16 25 H -0.29 -13.05 7.11 99.48 0.71 -12.35 16 26 H -0.30 -13.80 7.11 99.48 0.71 -13.10 16 27 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 28 C 0.15 5.97 6.52 86.43 0.56 6.54 16 29 C -0.09 -2.86 5.83 30.77 0.18 -2.68 16 30 H 0.12 0.94 8.14 -2.38 -0.02 0.92 16 31 H 0.08 0.53 7.69 -2.39 -0.02 0.51 16 32 H 0.08 0.50 7.72 -2.39 -0.02 0.48 16 33 H 0.18 1.50 6.45 -2.91 -0.02 1.49 16 34 H 0.43 0.92 9.06 -74.06 -0.67 0.25 16 35 H 0.19 2.80 6.41 -2.91 -0.02 2.78 16 36 H 0.41 8.34 5.17 -92.71 -0.48 7.86 16 37 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 38 H 0.11 2.65 8.14 -2.39 -0.02 2.63 16 39 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 40 H 0.07 2.08 6.75 -2.39 -0.02 2.06 16 41 H 0.00 -0.01 8.14 -2.39 -0.02 -0.02 16 42 H 0.06 2.96 5.93 -2.39 -0.01 2.94 16 43 H 0.25 14.17 8.31 -92.71 -0.77 13.40 16 44 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 45 H 0.05 2.09 7.92 -2.38 -0.02 2.07 16 46 H 0.08 2.23 8.10 -2.39 -0.02 2.21 16 47 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -76.80 382.82 -0.34 -77.14 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: -0.12 Total: 16.66 kcal Atomic # 6 Polarization: 6.65 SS G_CDS: 6.66 Total: 13.31 kcal Atomic # 7 Polarization: -113.06 SS G_CDS: -7.36 Total: -120.43 kcal Atomic # 8 Polarization: -31.95 SS G_CDS: -1.55 Total: -33.50 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -76.80 -0.34 -77.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016829858.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.461 kcal (2) G-P(sol) polarization free energy of solvation -76.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds