Wall clock time and date at job start Wed Apr 1 2020 05:26:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35504 * 116.99908 * 2 1 4 4 C 1.39212 * 120.90368 * 0.02562 * 3 2 1 5 5 C 1.37894 * 119.39259 * 179.97438 * 4 3 2 6 6 N 1.32081 * 121.29138 * 0.02562 * 5 4 3 7 7 C 1.32177 * 121.98059 * 0.02562 * 6 5 4 8 8 O 1.35422 * 119.77980 * 179.97438 * 7 6 5 9 9 C 1.40298 * 120.44574 * 359.97013 * 7 6 5 10 10 C 1.47227 * 120.65427 * 180.02562 * 9 7 6 11 11 O 1.21625 * 119.99748 * 90.00599 * 10 9 7 12 12 N 1.34778 * 120.00101 * 270.00186 * 10 9 7 13 13 C 1.46492 * 119.99965 * 180.02562 * 12 10 9 14 14 H 1.09001 * 115.55247 * 350.57781 * 13 12 10 15 15 C 1.53026 * 117.50498 * 136.27204 * 13 12 10 16 16 C 1.52821 * 117.50273 * 204.89931 * 13 12 10 17 17 C 1.53180 * 117.71575 * 144.89355 * 16 13 12 18 18 C 1.53357 * 108.77056 * 158.88869 * 17 16 13 19 19 N 1.46844 * 108.81395 * 51.30885 * 18 17 16 20 20 C 1.36939 * 120.38275 * 123.12062 * 19 18 17 21 21 H 1.07997 * 120.00020 * 208.88026 * 20 19 18 22 22 C 1.38809 * 119.99619 * 28.88555 * 20 19 18 23 23 N 1.31617 * 120.00566 * 17.85723 * 22 20 19 24 24 Si 1.86804 * 119.99722 * 197.86012 * 22 20 19 25 25 H 1.48502 * 109.47008 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.46905 * 120.00048 * 24 22 20 27 27 H 1.48493 * 109.47198 * 239.99783 * 24 22 20 28 28 C 1.46854 * 119.23311 * 303.10366 * 19 18 17 29 29 C 1.53190 * 117.71052 * 0.14059 * 16 13 12 30 30 H 1.09011 * 109.46789 * 300.00149 * 1 2 3 31 31 H 1.08992 * 109.47285 * 59.99926 * 1 2 3 32 32 H 1.08995 * 109.46896 * 180.02562 * 1 2 3 33 33 H 1.07997 * 120.29962 * 359.95306 * 4 3 2 34 34 H 1.08003 * 119.35495 * 180.02562 * 5 4 3 35 35 H 0.96707 * 114.00315 * 89.99555 * 8 7 6 36 36 H 0.97004 * 119.99526 * 0.02562 * 12 10 9 37 37 H 1.09004 * 117.50263 * 214.95365 * 15 13 12 38 38 H 1.09000 * 117.50207 * 359.97438 * 15 13 12 39 39 H 1.08995 * 109.59235 * 278.67887 * 17 16 13 40 40 H 1.08999 * 109.58857 * 39.10996 * 17 16 13 41 41 H 1.08999 * 109.57995 * 291.51512 * 18 17 16 42 42 H 1.08996 * 109.57825 * 171.11032 * 18 17 16 43 43 H 0.97000 * 120.00668 * 179.97438 * 23 22 20 44 44 H 1.08999 * 109.57936 * 297.10354 * 28 19 18 45 45 H 1.09000 * 109.57369 * 176.70228 * 28 19 18 46 46 H 1.09003 * 109.58662 * 320.89918 * 29 16 13 47 47 H 1.08991 * 109.58889 * 81.33276 * 29 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2074 0.0000 4 6 1.3044 2.3867 0.0005 5 6 1.9626 3.5984 0.0011 6 7 3.2819 3.6625 0.0006 7 6 4.0355 2.5766 -0.0010 8 8 5.3846 2.6942 -0.0020 9 6 3.4472 1.3030 -0.0015 10 6 4.2822 0.0904 -0.0026 11 8 4.6275 -0.4111 1.0502 12 7 4.6640 -0.4639 -1.1703 13 6 5.4944 -1.6707 -1.1714 14 1 5.8937 -1.9675 -0.2016 15 6 5.1218 -2.7840 -2.1530 16 6 6.3643 -1.9277 -2.4013 17 6 7.7328 -2.5800 -2.1823 18 6 8.1922 -3.2172 -3.4994 19 7 8.0898 -2.2176 -4.5701 20 6 9.1889 -1.8882 -5.3176 21 1 9.2734 -0.9012 -5.7477 22 6 10.1942 -2.8231 -5.5226 23 7 9.9564 -4.1012 -5.3170 24 14 11.8849 -2.2673 -6.0903 25 1 11.8937 -0.7906 -6.2470 26 1 12.9006 -2.6637 -5.0821 27 1 12.2045 -2.9056 -7.3923 28 6 6.7950 -1.5755 -4.8304 29 6 6.3074 -0.9049 -3.5403 30 1 -0.3633 0.5139 0.8901 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 0.2250 2.3528 0.0002 34 1 1.3882 4.5130 0.0019 35 1 5.7772 2.7277 0.8812 36 1 4.3888 -0.0636 -2.0100 37 1 5.2765 -3.8133 -1.8291 38 1 4.2586 -2.6186 -2.7976 39 1 8.4530 -1.8230 -1.8718 40 1 7.6526 -3.3482 -1.4132 41 1 7.5556 -4.0703 -3.7340 42 1 9.2270 -3.5463 -3.4045 43 1 10.6589 -4.7546 -5.4606 44 1 6.0718 -2.3269 -5.1474 45 1 6.9104 -0.8242 -5.6116 46 1 5.2814 -0.5615 -3.6723 47 1 6.9509 -0.0577 -3.3031 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016935568.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:26:17 Heat of formation + Delta-G solvation = -20.389161 kcal Electronic energy + Delta-G solvation = -30807.247128 eV Core-core repulsion = 26571.683114 eV Total energy + Delta-G solvation = -4235.564015 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.43197 -39.68811 -39.20182 -38.20243 -37.10695 -35.44084 -33.22362 -32.15173 -31.48114 -30.86419 -29.94063 -28.26514 -28.00302 -25.15095 -24.31105 -23.25292 -22.44375 -22.18001 -21.01314 -20.39087 -19.59014 -18.30614 -18.07521 -17.88206 -17.40059 -16.62569 -16.37858 -16.06987 -15.64895 -15.30963 -15.01032 -14.75460 -14.35898 -14.17924 -14.05381 -13.58951 -13.48880 -13.33950 -13.13904 -13.01848 -12.64264 -12.21559 -12.19770 -12.10224 -11.97733 -11.61706 -11.55444 -11.29076 -10.94217 -10.71461 -10.50122 -10.38638 -10.28006 -9.92642 -9.83125 -9.64034 -9.58222 -9.48162 -9.40462 -9.29155 -8.42769 -8.42445 -6.61030 -5.76100 -3.19052 0.35040 0.73624 2.41851 2.42645 2.96558 3.07456 3.39266 3.44225 3.47491 3.49984 4.06975 4.19859 4.36001 4.47577 4.49289 4.52616 4.61021 4.62970 4.96204 4.99590 5.01969 5.13289 5.18335 5.19095 5.39654 5.42170 5.53735 5.67437 5.75762 5.89529 6.09042 6.12491 6.13021 6.33223 6.48368 6.56724 6.59546 6.65294 6.68867 6.73742 6.87175 7.00594 7.08288 7.40109 7.43897 7.49103 7.70362 7.83092 8.14026 8.49479 9.24851 9.88467 10.45100 11.31640 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.017804 B = 0.002484 C = 0.002347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.312310 B =11269.039852 C =11925.689293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.298 6.298 3 C 0.217 3.783 4 C -0.276 4.276 5 C 0.174 3.826 6 N -0.523 5.523 7 C 0.387 3.613 8 O -0.469 6.469 9 C -0.231 4.231 10 C 0.587 3.413 11 O -0.535 6.535 12 N -0.678 5.678 13 C 0.069 3.931 14 H 0.133 0.867 15 C -0.181 4.181 16 C -0.094 4.094 17 C -0.105 4.105 18 C 0.173 3.827 19 N -0.589 5.589 20 C -0.252 4.252 21 H 0.065 0.935 22 C 0.002 3.998 23 N -0.901 5.901 24 Si 0.900 3.100 25 H -0.277 1.277 26 H -0.289 1.289 27 H -0.291 1.291 28 C 0.150 3.850 29 C -0.097 4.097 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.108 0.892 33 H 0.149 0.851 34 H 0.169 0.831 35 H 0.411 0.589 36 H 0.401 0.599 37 H 0.099 0.901 38 H 0.090 0.910 39 H 0.061 0.939 40 H 0.051 0.949 41 H 0.018 0.982 42 H 0.090 0.910 43 H 0.253 0.747 44 H 0.019 0.981 45 H 0.054 0.946 46 H 0.044 0.956 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.654 11.545 12.320 27.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.208 6.208 3 C 0.162 3.838 4 C -0.297 4.297 5 C 0.018 3.982 6 N -0.245 5.245 7 C 0.207 3.793 8 O -0.278 6.278 9 C -0.239 4.239 10 C 0.372 3.628 11 O -0.411 6.411 12 N -0.326 5.326 13 C -0.037 4.037 14 H 0.150 0.850 15 C -0.220 4.220 16 C -0.096 4.096 17 C -0.145 4.145 18 C 0.047 3.953 19 N -0.312 5.312 20 C -0.381 4.381 21 H 0.082 0.918 22 C -0.196 4.196 23 N -0.546 5.546 24 Si 0.730 3.270 25 H -0.202 1.202 26 H -0.216 1.216 27 H -0.218 1.218 28 C 0.024 3.976 29 C -0.137 4.137 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.126 0.874 33 H 0.167 0.833 34 H 0.186 0.814 35 H 0.272 0.728 36 H 0.237 0.763 37 H 0.117 0.883 38 H 0.109 0.891 39 H 0.080 0.920 40 H 0.070 0.930 41 H 0.036 0.964 42 H 0.108 0.892 43 H 0.063 0.937 44 H 0.036 0.964 45 H 0.072 0.928 46 H 0.062 0.938 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -20.812 11.575 12.442 26.869 hybrid contribution 0.032 -0.282 -0.243 0.374 sum -20.780 11.294 12.198 26.611 Atomic orbital electron populations 1.23262 0.76863 1.05053 1.01924 1.86119 1.22553 1.25603 1.86541 1.19085 0.90218 0.85320 0.89207 1.22172 1.01995 0.92563 1.13014 1.22445 0.88656 0.97355 0.89705 1.67336 1.07270 1.32086 1.17852 1.18823 0.84921 0.85368 0.90166 1.84706 1.13512 1.95042 1.34505 1.20338 0.91799 0.95596 1.16183 1.17394 0.78969 0.82316 0.84157 1.90798 1.56119 1.62966 1.31263 1.45322 1.51475 1.27758 1.08081 1.21934 0.98109 0.86514 0.97103 0.84971 1.23539 0.99459 0.96512 1.02456 1.21974 0.93019 0.99454 0.95121 1.21882 0.92949 0.98993 1.00651 1.20765 1.01557 0.89457 0.83486 1.43986 1.04467 1.46769 1.35943 1.19232 0.96417 0.95510 1.26969 0.91763 1.25041 0.99754 0.94816 1.00039 1.70042 1.32011 0.99634 1.52897 0.86259 0.84692 0.78177 0.77874 1.20241 1.21550 1.21786 1.20836 0.88514 0.95134 0.93151 1.21629 0.98903 0.97056 0.96099 0.91912 0.91833 0.87356 0.83293 0.81398 0.72847 0.76342 0.88264 0.89106 0.92044 0.93006 0.96377 0.89159 0.93709 0.96356 0.92755 0.93780 0.91588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.84 101.05 0.99 1.11 16 2 O -0.30 -2.98 10.03 -18.21 -0.18 -3.16 16 3 C 0.22 2.22 6.74 -38.32 -0.26 1.96 16 4 C -0.28 -1.95 9.09 -39.35 -0.36 -2.31 16 5 C 0.17 1.31 11.15 -17.57 -0.20 1.12 16 6 N -0.52 -5.68 10.37 -13.06 -0.14 -5.82 16 7 C 0.39 4.63 7.77 -16.63 -0.13 4.50 16 8 O -0.47 -5.51 13.01 -17.96 -0.23 -5.74 16 9 C -0.23 -2.89 5.67 -104.57 -0.59 -3.48 16 10 C 0.59 8.80 6.42 -12.61 -0.08 8.72 16 11 O -0.53 -9.67 16.67 5.26 0.09 -9.58 16 12 N -0.68 -9.68 5.34 -55.03 -0.29 -9.97 16 13 C 0.07 1.07 6.13 -68.01 -0.42 0.65 16 14 H 0.13 2.19 7.40 -51.93 -0.38 1.80 16 15 C -0.18 -2.73 9.87 -26.76 -0.26 -3.00 16 16 C -0.09 -1.61 1.94 -154.45 -0.30 -1.91 16 17 C -0.11 -2.05 5.83 -26.45 -0.15 -2.20 16 18 C 0.17 4.13 5.40 -3.67 -0.02 4.11 16 19 N -0.59 -14.78 2.94 -172.25 -0.51 -15.28 16 20 C -0.25 -6.93 9.54 -15.06 -0.14 -7.08 16 21 H 0.06 1.75 7.89 -52.49 -0.41 1.34 16 22 C 0.00 0.06 4.88 -17.43 -0.09 -0.03 16 23 N -0.90 -26.22 11.23 55.49 0.62 -25.59 16 24 Si 0.90 21.82 29.59 -169.99 -5.03 16.79 16 25 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 26 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 27 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 28 C 0.15 3.15 6.52 -3.67 -0.02 3.13 16 29 C -0.10 -1.70 5.37 -26.45 -0.14 -1.84 16 30 H 0.06 0.21 7.71 -51.92 -0.40 -0.19 16 31 H 0.06 0.21 7.71 -51.93 -0.40 -0.19 16 32 H 0.11 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.15 0.54 6.45 -52.49 -0.34 0.20 16 34 H 0.17 0.64 8.06 -52.48 -0.42 0.22 16 35 H 0.41 3.11 9.06 45.56 0.41 3.52 16 36 H 0.40 5.21 7.10 -40.82 -0.29 4.92 16 37 H 0.10 1.45 8.14 -51.93 -0.42 1.03 16 38 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 39 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 40 H 0.05 0.91 8.10 -51.93 -0.42 0.49 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.09 2.42 5.93 -51.93 -0.31 2.11 16 43 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 44 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.05 1.12 7.92 -51.93 -0.41 0.71 16 46 H 0.04 0.65 6.75 -51.93 -0.35 0.30 16 47 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 388.04 15.07 5.85 5.85 Total: -1.00 -35.31 388.04 -7.82 -43.13 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: -5.82 Total: 5.94 kcal Atomic # 6 Polarization: 5.61 SS G_CDS: -2.17 Total: 3.44 kcal Atomic # 7 Polarization: -56.35 SS G_CDS: -0.31 Total: -56.67 kcal Atomic # 8 Polarization: -18.16 SS G_CDS: -0.33 Total: -18.48 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.03 Total: 16.79 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -35.31 -7.82 -43.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016935568.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.737 kcal (2) G-P(sol) polarization free energy of solvation -35.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds