Wall clock time and date at job start Wed Apr 1 2020 05:26:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35504 * 116.99908 * 2 1 4 4 C 1.39212 * 120.90368 * 0.02562 * 3 2 1 5 5 C 1.37894 * 119.39259 * 179.97438 * 4 3 2 6 6 N 1.32081 * 121.29138 * 0.02562 * 5 4 3 7 7 C 1.32177 * 121.98059 * 0.02562 * 6 5 4 8 8 O 1.35422 * 119.77980 * 179.97438 * 7 6 5 9 9 C 1.40298 * 120.44574 * 359.97013 * 7 6 5 10 10 C 1.47227 * 120.65427 * 180.02562 * 9 7 6 11 11 O 1.21625 * 119.99748 * 90.00599 * 10 9 7 12 12 N 1.34778 * 120.00101 * 270.00186 * 10 9 7 13 13 C 1.46492 * 119.99965 * 180.02562 * 12 10 9 14 14 H 1.09001 * 115.55247 * 350.57781 * 13 12 10 15 15 C 1.53026 * 117.50498 * 136.27204 * 13 12 10 16 16 C 1.52821 * 117.50273 * 204.89931 * 13 12 10 17 17 C 1.53180 * 117.71575 * 144.89355 * 16 13 12 18 18 C 1.53357 * 108.77056 * 158.88869 * 17 16 13 19 19 N 1.46844 * 108.81395 * 51.30885 * 18 17 16 20 20 C 1.36939 * 120.38275 * 123.12062 * 19 18 17 21 21 H 1.07997 * 120.00020 * 208.88026 * 20 19 18 22 22 C 1.38809 * 119.99619 * 28.88555 * 20 19 18 23 23 N 1.31617 * 120.00566 * 17.85723 * 22 20 19 24 24 Si 1.86804 * 119.99722 * 197.86012 * 22 20 19 25 25 H 1.48502 * 109.47008 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.46905 * 120.00048 * 24 22 20 27 27 H 1.48493 * 109.47198 * 239.99783 * 24 22 20 28 28 C 1.46854 * 119.23311 * 303.10366 * 19 18 17 29 29 C 1.53190 * 117.71052 * 0.14059 * 16 13 12 30 30 H 1.09011 * 109.46789 * 300.00149 * 1 2 3 31 31 H 1.08992 * 109.47285 * 59.99926 * 1 2 3 32 32 H 1.08995 * 109.46896 * 180.02562 * 1 2 3 33 33 H 1.07997 * 120.29962 * 359.95306 * 4 3 2 34 34 H 1.08003 * 119.35495 * 180.02562 * 5 4 3 35 35 H 0.96707 * 114.00315 * 89.99555 * 8 7 6 36 36 H 0.97004 * 119.99526 * 0.02562 * 12 10 9 37 37 H 1.09004 * 117.50263 * 214.95365 * 15 13 12 38 38 H 1.09000 * 117.50207 * 359.97438 * 15 13 12 39 39 H 1.08995 * 109.59235 * 278.67887 * 17 16 13 40 40 H 1.08999 * 109.58857 * 39.10996 * 17 16 13 41 41 H 1.08999 * 109.57995 * 291.51512 * 18 17 16 42 42 H 1.08996 * 109.57825 * 171.11032 * 18 17 16 43 43 H 0.97000 * 120.00668 * 179.97438 * 23 22 20 44 44 H 1.08999 * 109.57936 * 297.10354 * 28 19 18 45 45 H 1.09000 * 109.57369 * 176.70228 * 28 19 18 46 46 H 1.09003 * 109.58662 * 320.89918 * 29 16 13 47 47 H 1.08991 * 109.58889 * 81.33276 * 29 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2074 0.0000 4 6 1.3044 2.3867 0.0005 5 6 1.9626 3.5984 0.0011 6 7 3.2819 3.6625 0.0006 7 6 4.0355 2.5766 -0.0010 8 8 5.3846 2.6942 -0.0020 9 6 3.4472 1.3030 -0.0015 10 6 4.2822 0.0904 -0.0026 11 8 4.6275 -0.4111 1.0502 12 7 4.6640 -0.4639 -1.1703 13 6 5.4944 -1.6707 -1.1714 14 1 5.8937 -1.9675 -0.2016 15 6 5.1218 -2.7840 -2.1530 16 6 6.3643 -1.9277 -2.4013 17 6 7.7328 -2.5800 -2.1823 18 6 8.1922 -3.2172 -3.4994 19 7 8.0898 -2.2176 -4.5701 20 6 9.1889 -1.8882 -5.3176 21 1 9.2734 -0.9012 -5.7477 22 6 10.1942 -2.8231 -5.5226 23 7 9.9564 -4.1012 -5.3170 24 14 11.8849 -2.2673 -6.0903 25 1 11.8937 -0.7906 -6.2470 26 1 12.9006 -2.6637 -5.0821 27 1 12.2045 -2.9056 -7.3923 28 6 6.7950 -1.5755 -4.8304 29 6 6.3074 -0.9049 -3.5403 30 1 -0.3633 0.5139 0.8901 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 0.2250 2.3528 0.0002 34 1 1.3882 4.5130 0.0019 35 1 5.7772 2.7277 0.8812 36 1 4.3888 -0.0636 -2.0100 37 1 5.2765 -3.8133 -1.8291 38 1 4.2586 -2.6186 -2.7976 39 1 8.4530 -1.8230 -1.8718 40 1 7.6526 -3.3482 -1.4132 41 1 7.5556 -4.0703 -3.7340 42 1 9.2270 -3.5463 -3.4045 43 1 10.6589 -4.7546 -5.4606 44 1 6.0718 -2.3269 -5.1474 45 1 6.9104 -0.8242 -5.6116 46 1 5.2814 -0.5615 -3.6723 47 1 6.9509 -0.0577 -3.3031 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016935568.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:26:16 Heat of formation + Delta-G solvation = -48.667004 kcal Electronic energy + Delta-G solvation = -30808.473348 eV Core-core repulsion = 26571.683114 eV Total energy + Delta-G solvation = -4236.790234 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.19557 -40.88196 -39.91743 -39.52195 -37.85495 -37.13979 -34.59105 -33.53586 -32.71707 -31.72216 -31.49101 -29.94516 -28.45792 -26.28711 -25.93363 -24.08924 -23.93289 -23.34880 -22.58285 -21.66942 -20.30415 -19.84021 -19.11412 -18.65432 -18.33446 -18.08072 -17.55506 -16.93150 -16.78028 -16.35512 -16.10234 -15.75376 -15.62581 -15.39617 -15.34451 -15.13524 -14.92858 -14.76836 -14.19078 -14.15170 -13.83593 -13.67675 -13.30500 -13.12491 -12.94742 -12.91415 -12.61660 -12.56512 -12.56212 -12.48094 -12.25663 -12.01225 -11.80609 -11.53199 -11.40166 -11.26650 -10.80005 -10.58050 -10.48611 -10.19226 -10.05905 -9.73757 -8.62861 -7.86433 -5.32504 -0.34523 0.05538 1.31332 1.45205 1.47770 1.58042 1.85187 1.95272 2.39219 2.51386 2.72497 2.90380 3.28191 3.39120 3.61357 3.69189 3.76669 3.77516 3.83669 3.88940 3.97222 4.10596 4.29616 4.30538 4.36981 4.48062 4.50607 4.57984 4.71017 4.73563 4.81470 4.83057 4.88296 4.90593 5.00539 5.06304 5.14378 5.22405 5.28927 5.36251 5.41409 5.54094 5.65754 5.77132 6.03097 6.34875 6.39062 6.41258 6.78334 7.02175 7.16368 7.88305 8.39418 9.18844 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.017804 B = 0.002484 C = 0.002347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.312310 B =11269.039852 C =11925.689293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.325 6.325 3 C 0.211 3.789 4 C -0.259 4.259 5 C 0.177 3.823 6 N -0.544 5.544 7 C 0.376 3.624 8 O -0.488 6.488 9 C -0.259 4.259 10 C 0.590 3.410 11 O -0.574 6.574 12 N -0.673 5.673 13 C 0.082 3.918 14 H 0.122 0.878 15 C -0.165 4.165 16 C -0.112 4.112 17 C -0.093 4.093 18 C 0.182 3.818 19 N -0.608 5.608 20 C -0.262 4.262 21 H 0.063 0.937 22 C -0.049 4.049 23 N -0.932 5.932 24 Si 0.963 3.037 25 H -0.268 1.268 26 H -0.290 1.290 27 H -0.291 1.291 28 C 0.147 3.853 29 C -0.083 4.083 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.117 0.883 33 H 0.190 0.810 34 H 0.210 0.790 35 H 0.423 0.577 36 H 0.409 0.591 37 H 0.105 0.895 38 H 0.108 0.892 39 H 0.047 0.953 40 H 0.069 0.931 41 H 0.002 0.998 42 H 0.055 0.945 43 H 0.250 0.750 44 H 0.020 0.980 45 H 0.053 0.947 46 H 0.077 0.923 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.653 13.383 12.631 30.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.236 6.236 3 C 0.156 3.844 4 C -0.279 4.279 5 C 0.022 3.978 6 N -0.267 5.267 7 C 0.197 3.803 8 O -0.298 6.298 9 C -0.267 4.267 10 C 0.377 3.623 11 O -0.453 6.453 12 N -0.321 5.321 13 C -0.024 4.024 14 H 0.140 0.860 15 C -0.203 4.203 16 C -0.114 4.114 17 C -0.133 4.133 18 C 0.056 3.944 19 N -0.331 5.331 20 C -0.393 4.393 21 H 0.081 0.919 22 C -0.245 4.245 23 N -0.578 5.578 24 Si 0.792 3.208 25 H -0.193 1.193 26 H -0.217 1.217 27 H -0.218 1.218 28 C 0.021 3.979 29 C -0.122 4.122 30 H 0.099 0.901 31 H 0.102 0.898 32 H 0.135 0.865 33 H 0.207 0.793 34 H 0.226 0.774 35 H 0.285 0.715 36 H 0.246 0.754 37 H 0.123 0.877 38 H 0.126 0.874 39 H 0.066 0.934 40 H 0.087 0.913 41 H 0.020 0.980 42 H 0.073 0.927 43 H 0.059 0.941 44 H 0.038 0.962 45 H 0.072 0.928 46 H 0.096 0.904 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -23.852 13.445 12.746 30.202 hybrid contribution 0.820 -0.833 -0.331 1.215 sum -23.032 12.612 12.416 29.046 Atomic orbital electron populations 1.23616 0.74379 1.06389 1.03759 1.86088 1.25201 1.25890 1.86399 1.19265 0.89600 0.86562 0.89021 1.22558 1.03730 0.90953 1.10678 1.23214 0.87735 0.99229 0.87594 1.67406 1.08904 1.31587 1.18832 1.18893 0.84914 0.85632 0.90888 1.84650 1.14187 1.95127 1.35864 1.20218 0.92817 0.94369 1.19252 1.17794 0.78427 0.82652 0.83454 1.90765 1.57683 1.64372 1.32530 1.45277 1.50967 1.27307 1.08509 1.21698 0.97447 0.87300 0.95919 0.86029 1.23619 0.98401 0.96570 1.01702 1.21810 0.92526 1.00703 0.96329 1.21638 0.94229 0.98954 0.98457 1.20532 0.99195 0.89263 0.85432 1.44241 1.05535 1.47140 1.36216 1.19524 0.97591 0.95448 1.26691 0.91903 1.25766 1.02979 0.94877 1.00866 1.70180 1.32756 1.00544 1.54361 0.85268 0.80390 0.78093 0.77069 1.19260 1.21712 1.21773 1.20976 0.86799 0.94992 0.95090 1.21431 1.00359 0.96249 0.94149 0.90133 0.89804 0.86507 0.79308 0.77376 0.71507 0.75441 0.87651 0.87385 0.93381 0.91281 0.98030 0.92699 0.94088 0.96250 0.92817 0.90411 0.92809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.08 9.84 113.37 1.12 1.19 16 2 O -0.33 -5.80 10.03 -88.06 -0.88 -6.68 16 3 C 0.21 3.85 6.74 23.09 0.16 4.00 16 4 C -0.26 -2.66 9.09 22.42 0.20 -2.45 16 5 C 0.18 2.04 11.15 84.57 0.94 2.98 16 6 N -0.54 -10.84 10.37 -308.28 -3.20 -14.03 16 7 C 0.38 8.76 7.77 85.14 0.66 9.42 16 8 O -0.49 -11.58 13.01 -87.17 -1.13 -12.71 16 9 C -0.26 -6.24 5.67 -19.83 -0.11 -6.35 16 10 C 0.59 17.53 6.42 86.61 0.56 18.09 16 11 O -0.57 -21.03 16.67 -4.11 -0.07 -21.10 16 12 N -0.67 -18.50 5.34 -446.25 -2.38 -20.89 16 13 C 0.08 2.47 6.13 44.94 0.28 2.75 16 14 H 0.12 4.00 7.40 -2.39 -0.02 3.98 16 15 C -0.16 -4.66 9.87 30.58 0.30 -4.36 16 16 C -0.11 -3.75 1.94 -52.14 -0.10 -3.85 16 17 C -0.09 -3.68 5.83 30.77 0.18 -3.50 16 18 C 0.18 8.93 5.40 86.43 0.47 9.39 16 19 N -0.61 -31.07 2.94 -698.87 -2.05 -33.13 16 20 C -0.26 -14.72 9.54 84.03 0.80 -13.92 16 21 H 0.06 3.47 7.89 -2.91 -0.02 3.44 16 22 C -0.05 -2.81 4.88 84.86 0.41 -2.39 16 23 N -0.93 -55.85 11.23 21.65 0.24 -55.60 16 24 Si 0.96 45.72 29.59 68.60 2.03 47.75 16 25 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 26 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 27 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 28 C 0.15 6.11 6.52 86.43 0.56 6.68 16 29 C -0.08 -2.79 5.37 30.78 0.17 -2.63 16 30 H 0.08 0.23 7.71 -2.38 -0.02 0.21 16 31 H 0.08 0.20 7.71 -2.39 -0.02 0.18 16 32 H 0.12 0.53 8.14 -2.39 -0.02 0.52 16 33 H 0.19 0.32 6.45 -2.91 -0.02 0.30 16 34 H 0.21 0.55 8.06 -2.91 -0.02 0.53 16 35 H 0.42 6.74 9.06 -74.05 -0.67 6.07 16 36 H 0.41 9.92 7.10 -92.71 -0.66 9.26 16 37 H 0.11 2.89 8.14 -2.39 -0.02 2.87 16 38 H 0.11 2.72 8.14 -2.39 -0.02 2.70 16 39 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 40 H 0.07 2.43 8.10 -2.39 -0.02 2.42 16 41 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 42 H 0.05 3.07 5.93 -2.39 -0.01 3.06 16 43 H 0.25 14.45 8.31 -92.71 -0.77 13.67 16 44 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 45 H 0.05 2.20 7.92 -2.39 -0.02 2.18 16 46 H 0.08 2.10 6.75 -2.39 -0.02 2.08 16 47 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -79.45 388.04 -1.16 -80.61 By element: Atomic # 1 Polarization: 21.02 SS G_CDS: -0.30 Total: 20.72 kcal Atomic # 6 Polarization: 8.46 SS G_CDS: 6.59 Total: 15.05 kcal Atomic # 7 Polarization: -116.26 SS G_CDS: -7.39 Total: -123.65 kcal Atomic # 8 Polarization: -38.40 SS G_CDS: -2.09 Total: -40.49 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Total: -79.45 -1.16 -80.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016935568.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.943 kcal (2) G-P(sol) polarization free energy of solvation -79.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds