Wall clock time and date at job start Wed Apr 1 2020 04:48:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34774 * 120.00482 * 2 1 4 4 O 1.21556 * 119.99549 * 359.97438 * 3 2 1 5 5 C 1.47853 * 120.00446 * 179.97438 * 3 2 1 6 6 C 1.39710 * 120.07189 * 359.97438 * 5 3 2 7 7 C 1.38052 * 120.14521 * 179.97438 * 6 5 3 8 8 C 1.38098 * 120.29670 * 359.78739 * 7 6 5 9 9 C 1.39667 * 120.14613 * 0.46736 * 8 7 6 10 10 C 1.47857 * 120.07620 * 179.78535 * 9 8 7 11 11 O 1.21548 * 120.00276 * 179.71795 * 10 9 8 12 12 N 1.34783 * 119.99905 * 359.72855 * 10 9 8 13 13 C 1.46501 * 119.99965 * 179.97438 * 12 10 9 14 14 C 1.52994 * 109.47195 * 179.97438 * 13 12 10 15 15 H 1.08997 * 109.51228 * 304.90238 * 14 13 12 16 16 C 1.52874 * 109.62721 * 184.90811 * 14 13 12 17 17 N 1.47146 * 108.61038 * 187.90024 * 16 14 13 18 18 C 1.36938 * 120.98166 * 230.49961 * 17 16 14 19 19 H 1.08000 * 120.00437 * 26.46046 * 18 17 16 20 20 C 1.38817 * 120.00106 * 206.45559 * 18 17 16 21 21 N 1.31620 * 119.99788 * 16.42248 * 20 18 17 22 22 Si 1.86802 * 119.99867 * 196.14101 * 20 18 17 23 23 H 1.48493 * 109.47220 * 0.02562 * 22 20 18 24 24 H 1.48496 * 109.46793 * 120.00703 * 22 20 18 25 25 H 1.48501 * 109.47003 * 240.00077 * 22 20 18 26 26 C 1.47152 * 118.03553 * 50.22601 * 17 16 14 27 27 C 1.53291 * 108.38463 * 309.71610 * 26 17 16 28 28 O 1.42958 * 109.22268 * 52.30270 * 27 26 17 29 29 C 1.39296 * 120.07532 * 180.02562 * 5 3 2 30 30 H 1.08997 * 109.46899 * 300.00556 * 1 2 3 31 31 H 1.09003 * 109.46865 * 59.99457 * 1 2 3 32 32 H 1.08998 * 109.47349 * 179.97438 * 1 2 3 33 33 H 0.97001 * 120.00019 * 179.97438 * 2 1 3 34 34 H 1.08001 * 119.92697 * 0.02562 * 6 5 3 35 35 H 1.08002 * 119.85183 * 180.02562 * 7 6 5 36 36 H 1.08003 * 119.93050 * 180.23254 * 8 7 6 37 37 H 0.97002 * 119.99921 * 359.97438 * 12 10 9 38 38 H 1.09002 * 109.46907 * 59.99826 * 13 12 10 39 39 H 1.08995 * 109.47254 * 300.00014 * 13 12 10 40 40 H 1.09004 * 109.61801 * 68.08073 * 16 14 13 41 41 H 1.09002 * 109.52448 * 307.66775 * 16 14 13 42 42 H 0.96997 * 119.99644 * 179.97438 * 21 20 18 43 43 H 1.08995 * 109.68009 * 69.44637 * 26 17 16 44 44 H 1.08998 * 109.67837 * 189.95158 * 26 17 16 45 45 H 1.09002 * 109.50962 * 172.22809 * 27 26 17 46 46 H 1.08996 * 109.51452 * 292.32644 * 27 26 17 47 47 H 1.07995 * 120.14390 * 359.97438 * 29 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 1.5312 2.2198 -0.0005 5 6 3.6175 1.1671 0.0006 6 6 4.3176 -0.0419 0.0017 7 6 5.6981 -0.0437 0.0017 8 6 6.3963 1.1477 -0.0038 9 6 5.7090 2.3636 0.0004 10 6 6.4581 3.6383 -0.0007 11 8 5.8585 4.6956 -0.0021 12 7 7.8059 3.6279 -0.0003 13 6 8.5481 4.8910 -0.0019 14 6 10.0501 4.5998 -0.0004 15 1 10.2951 3.9549 0.8435 16 6 10.8272 5.9107 0.1211 17 7 12.2584 5.6277 -0.0703 18 6 13.1920 6.0791 0.8241 19 1 12.9127 6.2588 1.8518 20 6 14.4974 6.3057 0.4099 21 7 14.7729 6.4042 -0.8734 22 14 15.8617 6.4786 1.6741 23 1 15.2934 6.3348 3.0385 24 1 16.8815 5.4229 1.4493 25 1 16.4948 7.8151 1.5394 26 6 12.6563 4.8400 -1.2478 27 6 11.7897 3.5767 -1.2997 28 8 10.4114 3.9478 -1.2203 29 6 4.3156 2.3725 0.0011 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.9500 -0.8400 0.0004 34 1 3.7776 -0.9772 0.0017 35 1 6.2345 -0.9811 0.0021 36 1 7.4763 1.1394 -0.0076 37 1 8.2844 2.7841 0.0011 38 1 8.2889 5.4659 0.8872 39 1 8.2895 5.4632 -0.8928 40 1 10.6670 6.3408 1.1098 41 1 10.4856 6.6088 -0.6432 42 1 15.6850 6.5628 -1.1627 43 1 12.5021 5.4285 -2.1522 44 1 13.7070 4.5621 -1.1655 45 1 11.9713 3.0489 -2.2360 46 1 12.0416 2.9276 -0.4611 47 1 3.7792 3.3099 0.0007 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035608234.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:48:30 Heat of formation + Delta-G solvation = -59.777299 kcal Electronic energy + Delta-G solvation = -29395.580604 eV Core-core repulsion = 25158.308591 eV Total energy + Delta-G solvation = -4237.272013 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -40.78974 -39.81713 -38.65850 -38.00830 -35.14389 -35.01367 -34.35109 -32.33982 -31.49730 -31.40219 -30.55519 -27.75158 -27.29596 -25.73972 -24.28985 -23.36757 -23.08903 -21.80794 -21.47968 -20.43696 -19.71987 -18.87280 -17.11852 -16.87429 -16.58144 -16.53285 -16.11011 -15.88895 -15.66069 -15.08357 -14.96438 -14.75554 -14.66317 -14.37606 -14.15679 -13.99645 -13.73821 -13.55824 -13.24566 -13.09523 -12.87286 -12.82512 -12.72072 -12.39276 -12.29634 -11.75305 -11.59587 -11.16148 -10.90839 -10.75215 -10.45988 -10.43285 -10.28879 -10.08007 -10.00773 -9.70026 -9.69938 -9.48020 -9.41802 -9.12195 -9.02223 -8.59108 -6.79477 -5.88298 -3.32475 0.23221 0.69091 2.23669 2.66352 2.89939 3.09564 3.30889 3.39101 3.41105 3.57534 4.13522 4.17847 4.28010 4.37632 4.39899 4.64949 4.67525 4.77465 4.96184 5.04639 5.05768 5.18318 5.29492 5.34306 5.43073 5.46610 5.47811 5.75194 5.77056 5.79119 5.83258 5.86014 5.88096 5.98991 6.10024 6.22935 6.29996 6.32153 6.43787 6.45724 6.71703 6.96056 7.05707 7.44853 7.47891 7.67324 7.74965 7.79852 8.13995 8.29384 9.07411 9.69895 10.26653 11.19968 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.030522 B = 0.001740 C = 0.001708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.162073 B =16086.670439 C =16391.491385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.733 5.733 3 C 0.559 3.441 4 O -0.528 6.528 5 C -0.147 4.147 6 C -0.066 4.066 7 C -0.132 4.132 8 C -0.058 4.058 9 C -0.134 4.134 10 C 0.554 3.446 11 O -0.534 6.534 12 N -0.713 5.713 13 C 0.130 3.870 14 C 0.065 3.935 15 H 0.059 0.941 16 C 0.121 3.879 17 N -0.593 5.593 18 C -0.256 4.256 19 H 0.069 0.931 20 C 0.003 3.997 21 N -0.902 5.902 22 Si 0.905 3.095 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.289 1.289 26 C 0.139 3.861 27 C 0.039 3.961 28 O -0.390 6.390 29 C -0.001 4.001 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.077 0.923 33 H 0.401 0.599 34 H 0.129 0.871 35 H 0.138 0.862 36 H 0.135 0.865 37 H 0.402 0.598 38 H 0.084 0.916 39 H 0.078 0.922 40 H 0.064 0.936 41 H 0.030 0.970 42 H 0.255 0.745 43 H 0.029 0.971 44 H 0.094 0.906 45 H 0.082 0.918 46 H 0.041 0.959 47 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.574 -19.719 1.287 29.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.386 5.386 3 C 0.346 3.654 4 O -0.405 6.405 5 C -0.150 4.150 6 C -0.085 4.085 7 C -0.150 4.150 8 C -0.077 4.077 9 C -0.138 4.138 10 C 0.340 3.660 11 O -0.412 6.412 12 N -0.365 5.365 13 C 0.006 3.994 14 C 0.005 3.995 15 H 0.077 0.923 16 C -0.006 4.006 17 N -0.317 5.317 18 C -0.385 4.385 19 H 0.087 0.913 20 C -0.196 4.196 21 N -0.547 5.547 22 Si 0.735 3.265 23 H -0.202 1.202 24 H -0.215 1.215 25 H -0.216 1.216 26 C 0.013 3.987 27 C -0.038 4.038 28 O -0.309 6.309 29 C -0.021 4.021 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.096 0.904 33 H 0.236 0.764 34 H 0.147 0.853 35 H 0.155 0.845 36 H 0.153 0.847 37 H 0.237 0.763 38 H 0.102 0.898 39 H 0.097 0.903 40 H 0.083 0.917 41 H 0.048 0.952 42 H 0.065 0.935 43 H 0.047 0.953 44 H 0.112 0.888 45 H 0.100 0.900 46 H 0.059 0.941 47 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -22.403 -18.147 1.075 28.851 hybrid contribution 1.570 -0.774 0.685 1.879 sum -20.833 -18.921 1.761 28.198 Atomic orbital electron populations 1.21575 0.78980 1.02401 1.02695 1.45687 1.08011 1.08500 1.76378 1.18252 0.87110 0.83831 0.76190 1.90821 1.69783 1.31066 1.48824 1.19826 0.92855 0.94241 1.08090 1.21446 0.94748 0.96796 0.95475 1.21063 0.93813 0.98484 1.01596 1.21626 1.00538 0.91656 0.93907 1.20004 0.94016 0.93558 1.06190 1.18140 0.82260 0.88563 0.76988 1.90804 1.68701 1.32010 1.49698 1.45861 1.05674 1.10543 1.74400 1.21473 0.89255 0.85385 1.03254 1.22727 0.92172 0.96909 0.87704 0.92347 1.21357 0.86333 0.92888 1.00022 1.44046 1.00142 1.60436 1.27105 1.19242 0.89578 1.39641 0.90041 0.91283 1.25060 0.98818 0.99783 0.95941 1.70040 1.19077 1.52317 1.13218 0.86179 0.82061 0.77415 0.80857 1.20200 1.21489 1.21585 1.21442 0.98814 0.89003 0.89404 1.23326 0.81702 0.98626 1.00179 1.87793 1.27103 1.78079 1.37948 1.21399 0.92451 0.98563 0.89654 0.91951 0.91948 0.90450 0.76408 0.85276 0.84457 0.84737 0.76265 0.89827 0.90347 0.91711 0.95173 0.93522 0.95317 0.88784 0.90021 0.94103 0.83164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.43 10.70 59.85 0.64 1.07 16 2 N -0.73 -4.41 5.66 -68.04 -0.39 -4.80 16 3 C 0.56 5.65 7.77 -12.33 -0.10 5.56 16 4 O -0.53 -7.58 16.34 5.32 0.09 -7.49 16 5 C -0.15 -1.36 5.87 -105.02 -0.62 -1.98 16 6 C -0.07 -0.39 9.54 -39.10 -0.37 -0.76 16 7 C -0.13 -0.78 10.02 -39.70 -0.40 -1.18 16 8 C -0.06 -0.46 9.54 -39.10 -0.37 -0.84 16 9 C -0.13 -1.51 5.87 -105.02 -0.62 -2.12 16 10 C 0.55 7.78 7.77 -12.32 -0.10 7.69 16 11 O -0.53 -9.49 16.34 5.32 0.09 -9.41 16 12 N -0.71 -9.18 5.45 -61.25 -0.33 -9.51 16 13 C 0.13 1.92 5.35 -4.04 -0.02 1.90 16 14 C 0.06 1.09 2.80 -26.80 -0.07 1.01 16 15 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 16 C 0.12 2.47 6.00 -3.75 -0.02 2.45 16 17 N -0.59 -14.53 3.05 -172.09 -0.53 -15.05 16 18 C -0.26 -6.84 9.65 -15.06 -0.15 -6.98 16 19 H 0.07 1.80 7.88 -52.49 -0.41 1.39 16 20 C 0.00 0.07 4.95 -17.43 -0.09 -0.01 16 21 N -0.90 -25.63 11.15 55.49 0.62 -25.01 16 22 Si 0.91 21.13 29.58 -169.99 -5.03 16.10 16 23 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 24 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 25 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 26 C 0.14 3.23 5.44 -3.54 -0.02 3.21 16 27 C 0.04 0.72 6.98 37.31 0.26 0.99 16 28 O -0.39 -6.99 10.33 -35.23 -0.36 -7.35 16 29 C 0.00 -0.01 9.14 -38.78 -0.35 -0.37 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.08 0.13 8.14 -51.93 -0.42 -0.29 16 33 H 0.40 1.09 6.85 -40.82 -0.28 0.81 16 34 H 0.13 0.30 6.39 -52.49 -0.34 -0.04 16 35 H 0.14 0.44 8.06 -52.49 -0.42 0.02 16 36 H 0.13 0.84 6.39 -52.48 -0.34 0.50 16 37 H 0.40 4.28 6.50 -40.82 -0.27 4.01 16 38 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.06 1.25 7.96 -51.93 -0.41 0.84 16 41 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 43 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.09 2.40 6.16 -51.93 -0.32 2.08 16 45 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 46 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 47 H 0.15 2.06 7.23 -52.49 -0.38 1.68 16 LS Contribution 389.76 15.07 5.87 5.87 Total: -1.00 -35.44 389.76 -8.89 -44.33 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -6.53 Total: 2.69 kcal Atomic # 6 Polarization: 12.01 SS G_CDS: -2.39 Total: 9.62 kcal Atomic # 7 Polarization: -53.75 SS G_CDS: -0.63 Total: -54.37 kcal Atomic # 8 Polarization: -24.06 SS G_CDS: -0.19 Total: -24.25 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.03 Total: 16.10 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -35.44 -8.89 -44.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035608234.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.446 kcal (2) G-P(sol) polarization free energy of solvation -35.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds