Wall clock time and date at job start Wed Apr 1 2020 04:48:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34774 * 120.00482 * 2 1 4 4 O 1.21556 * 119.99549 * 359.97438 * 3 2 1 5 5 C 1.47853 * 120.00446 * 179.97438 * 3 2 1 6 6 C 1.39710 * 120.07189 * 359.97438 * 5 3 2 7 7 C 1.38052 * 120.14521 * 179.97438 * 6 5 3 8 8 C 1.38098 * 120.29670 * 359.78739 * 7 6 5 9 9 C 1.39667 * 120.14613 * 0.46736 * 8 7 6 10 10 C 1.47857 * 120.07620 * 179.78535 * 9 8 7 11 11 O 1.21548 * 120.00276 * 179.71795 * 10 9 8 12 12 N 1.34783 * 119.99905 * 359.72855 * 10 9 8 13 13 C 1.46501 * 119.99965 * 179.97438 * 12 10 9 14 14 C 1.52994 * 109.47195 * 179.97438 * 13 12 10 15 15 H 1.08997 * 109.51228 * 304.90238 * 14 13 12 16 16 C 1.52874 * 109.62721 * 184.90811 * 14 13 12 17 17 N 1.47146 * 108.61038 * 187.90024 * 16 14 13 18 18 C 1.36938 * 120.98166 * 230.49961 * 17 16 14 19 19 H 1.08000 * 120.00437 * 26.46046 * 18 17 16 20 20 C 1.38817 * 120.00106 * 206.45559 * 18 17 16 21 21 N 1.31620 * 119.99788 * 16.42248 * 20 18 17 22 22 Si 1.86802 * 119.99867 * 196.14101 * 20 18 17 23 23 H 1.48493 * 109.47220 * 0.02562 * 22 20 18 24 24 H 1.48496 * 109.46793 * 120.00703 * 22 20 18 25 25 H 1.48501 * 109.47003 * 240.00077 * 22 20 18 26 26 C 1.47152 * 118.03553 * 50.22601 * 17 16 14 27 27 C 1.53291 * 108.38463 * 309.71610 * 26 17 16 28 28 O 1.42958 * 109.22268 * 52.30270 * 27 26 17 29 29 C 1.39296 * 120.07532 * 180.02562 * 5 3 2 30 30 H 1.08997 * 109.46899 * 300.00556 * 1 2 3 31 31 H 1.09003 * 109.46865 * 59.99457 * 1 2 3 32 32 H 1.08998 * 109.47349 * 179.97438 * 1 2 3 33 33 H 0.97001 * 120.00019 * 179.97438 * 2 1 3 34 34 H 1.08001 * 119.92697 * 0.02562 * 6 5 3 35 35 H 1.08002 * 119.85183 * 180.02562 * 7 6 5 36 36 H 1.08003 * 119.93050 * 180.23254 * 8 7 6 37 37 H 0.97002 * 119.99921 * 359.97438 * 12 10 9 38 38 H 1.09002 * 109.46907 * 59.99826 * 13 12 10 39 39 H 1.08995 * 109.47254 * 300.00014 * 13 12 10 40 40 H 1.09004 * 109.61801 * 68.08073 * 16 14 13 41 41 H 1.09002 * 109.52448 * 307.66775 * 16 14 13 42 42 H 0.96997 * 119.99644 * 179.97438 * 21 20 18 43 43 H 1.08995 * 109.68009 * 69.44637 * 26 17 16 44 44 H 1.08998 * 109.67837 * 189.95158 * 26 17 16 45 45 H 1.09002 * 109.50962 * 172.22809 * 27 26 17 46 46 H 1.08996 * 109.51452 * 292.32644 * 27 26 17 47 47 H 1.07995 * 120.14390 * 359.97438 * 29 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 1.5312 2.2198 -0.0005 5 6 3.6175 1.1671 0.0006 6 6 4.3176 -0.0419 0.0017 7 6 5.6981 -0.0437 0.0017 8 6 6.3963 1.1477 -0.0038 9 6 5.7090 2.3636 0.0004 10 6 6.4581 3.6383 -0.0007 11 8 5.8585 4.6956 -0.0021 12 7 7.8059 3.6279 -0.0003 13 6 8.5481 4.8910 -0.0019 14 6 10.0501 4.5998 -0.0004 15 1 10.2951 3.9549 0.8435 16 6 10.8272 5.9107 0.1211 17 7 12.2584 5.6277 -0.0703 18 6 13.1920 6.0791 0.8241 19 1 12.9127 6.2588 1.8518 20 6 14.4974 6.3057 0.4099 21 7 14.7729 6.4042 -0.8734 22 14 15.8617 6.4786 1.6741 23 1 15.2934 6.3348 3.0385 24 1 16.8815 5.4229 1.4493 25 1 16.4948 7.8151 1.5394 26 6 12.6563 4.8400 -1.2478 27 6 11.7897 3.5767 -1.2997 28 8 10.4114 3.9478 -1.2203 29 6 4.3156 2.3725 0.0011 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.9500 -0.8400 0.0004 34 1 3.7776 -0.9772 0.0017 35 1 6.2345 -0.9811 0.0021 36 1 7.4763 1.1394 -0.0076 37 1 8.2844 2.7841 0.0011 38 1 8.2889 5.4659 0.8872 39 1 8.2895 5.4632 -0.8928 40 1 10.6670 6.3408 1.1098 41 1 10.4856 6.6088 -0.6432 42 1 15.6850 6.5628 -1.1627 43 1 12.5021 5.4285 -2.1522 44 1 13.7070 4.5621 -1.1655 45 1 11.9713 3.0489 -2.2360 46 1 12.0416 2.9276 -0.4611 47 1 3.7792 3.3099 0.0007 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035608234.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:48:29 Heat of formation + Delta-G solvation = -87.153552 kcal Electronic energy + Delta-G solvation = -29396.767727 eV Core-core repulsion = 25158.308591 eV Total energy + Delta-G solvation = -4238.459136 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.60031 -40.81325 -40.05910 -38.88622 -36.55181 -35.87541 -35.80998 -33.51763 -32.98057 -32.15461 -31.92196 -29.27185 -28.03926 -27.20170 -25.21188 -24.87518 -24.12309 -23.11782 -22.30298 -21.61928 -21.01334 -19.73605 -18.87046 -17.82603 -17.61426 -17.38718 -17.23282 -16.91223 -16.75281 -16.38467 -16.22375 -16.00868 -15.70614 -15.53168 -15.34885 -15.02816 -14.90065 -14.79915 -14.58952 -14.34229 -14.17534 -13.83173 -13.32226 -13.24452 -13.19227 -13.02608 -12.91089 -12.72374 -12.50996 -12.45603 -12.16872 -12.05377 -11.87642 -11.37948 -11.27311 -11.09260 -10.80248 -10.55702 -10.41171 -10.29542 -10.03664 -9.97698 -8.75707 -7.91762 -5.39587 -0.41943 -0.03894 1.46095 1.48142 1.49988 1.58687 1.92758 2.00314 2.19903 2.47860 2.76031 2.83409 3.23701 3.46796 3.55754 3.59816 3.81312 3.95909 4.01115 4.05419 4.08684 4.24554 4.33514 4.41736 4.48378 4.51660 4.59489 4.61504 4.63094 4.71500 4.75878 4.87821 4.90346 4.95712 5.05061 5.14509 5.18604 5.24154 5.24426 5.28564 5.32864 5.56020 5.61743 5.71486 6.25286 6.32696 6.43934 6.45653 7.06069 7.09382 7.13035 7.73750 8.27315 9.14521 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.030522 B = 0.001740 C = 0.001708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.162073 B =16086.670439 C =16391.491385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.712 5.712 3 C 0.551 3.449 4 O -0.586 6.586 5 C -0.158 4.158 6 C -0.043 4.043 7 C -0.119 4.119 8 C -0.052 4.052 9 C -0.155 4.155 10 C 0.552 3.448 11 O -0.584 6.584 12 N -0.701 5.701 13 C 0.139 3.861 14 C 0.081 3.919 15 H 0.075 0.925 16 C 0.115 3.885 17 N -0.612 5.612 18 C -0.266 4.266 19 H 0.073 0.927 20 C -0.050 4.050 21 N -0.936 5.936 22 Si 0.971 3.029 23 H -0.265 1.265 24 H -0.287 1.287 25 H -0.295 1.295 26 C 0.142 3.858 27 C 0.054 3.946 28 O -0.389 6.389 29 C -0.026 4.026 30 H 0.049 0.951 31 H 0.049 0.951 32 H 0.119 0.881 33 H 0.421 0.579 34 H 0.176 0.824 35 H 0.182 0.818 36 H 0.157 0.843 37 H 0.416 0.584 38 H 0.089 0.911 39 H 0.062 0.938 40 H 0.072 0.928 41 H 0.015 0.985 42 H 0.251 0.749 43 H -0.003 1.003 44 H 0.068 0.932 45 H 0.110 0.890 46 H 0.055 0.945 47 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.731 -24.440 2.295 32.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.364 5.364 3 C 0.339 3.661 4 O -0.467 6.467 5 C -0.161 4.161 6 C -0.061 4.061 7 C -0.136 4.136 8 C -0.070 4.070 9 C -0.158 4.158 10 C 0.341 3.659 11 O -0.466 6.466 12 N -0.353 5.353 13 C 0.015 3.985 14 C 0.022 3.978 15 H 0.093 0.907 16 C -0.011 4.011 17 N -0.336 5.336 18 C -0.396 4.396 19 H 0.091 0.909 20 C -0.245 4.245 21 N -0.582 5.582 22 Si 0.799 3.201 23 H -0.189 1.189 24 H -0.213 1.213 25 H -0.222 1.222 26 C 0.016 3.984 27 C -0.023 4.023 28 O -0.308 6.308 29 C -0.046 4.046 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.138 0.862 33 H 0.259 0.741 34 H 0.193 0.807 35 H 0.199 0.801 36 H 0.174 0.826 37 H 0.254 0.746 38 H 0.107 0.893 39 H 0.080 0.920 40 H 0.090 0.910 41 H 0.033 0.967 42 H 0.061 0.939 43 H 0.015 0.985 44 H 0.086 0.914 45 H 0.128 0.872 46 H 0.074 0.926 47 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -22.570 -22.963 2.092 32.266 hybrid contribution 1.540 0.652 0.353 1.709 sum -21.030 -22.311 2.445 30.758 Atomic orbital electron populations 1.21744 0.78153 1.04743 1.01515 1.45578 1.08598 1.08073 1.74201 1.18549 0.87666 0.84131 0.75705 1.90792 1.70847 1.33295 1.51793 1.19835 0.92477 0.94743 1.09058 1.21941 0.95180 0.96874 0.92141 1.21580 0.93740 0.99194 0.99084 1.21920 1.01669 0.90934 0.92510 1.19757 0.93469 0.93410 1.09162 1.18649 0.82351 0.89188 0.75726 1.90774 1.69631 1.34095 1.52067 1.45667 1.05345 1.10401 1.73913 1.21231 0.88175 0.86271 1.02841 1.22534 0.92486 0.94912 0.87896 0.90734 1.21517 0.84806 0.94860 0.99941 1.44318 1.01416 1.60924 1.26965 1.19595 0.90336 1.38946 0.90674 0.90935 1.25834 1.00970 1.00093 0.97612 1.70198 1.19164 1.53811 1.15043 0.85149 0.79075 0.76752 0.79095 1.18912 1.21299 1.22215 1.21329 0.98593 0.90694 0.87787 1.23165 0.80728 0.96080 1.02331 1.87811 1.26614 1.77865 1.38549 1.21199 0.93004 0.98367 0.92074 0.93184 0.93232 0.86235 0.74073 0.80674 0.80069 0.82595 0.74610 0.89297 0.91990 0.90957 0.96687 0.93945 0.98518 0.91389 0.87215 0.92637 0.87101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.67 10.70 127.77 1.37 2.04 16 2 N -0.71 -6.97 5.66 -487.46 -2.76 -9.73 16 3 C 0.55 11.09 7.77 86.79 0.67 11.76 16 4 O -0.59 -18.10 16.34 -3.89 -0.06 -18.17 16 5 C -0.16 -2.78 5.87 -20.12 -0.12 -2.89 16 6 C -0.04 -0.32 9.54 22.58 0.22 -0.10 16 7 C -0.12 -0.77 10.02 22.19 0.22 -0.54 16 8 C -0.05 -0.65 9.54 22.58 0.22 -0.43 16 9 C -0.15 -3.42 5.87 -20.12 -0.12 -3.53 16 10 C 0.55 15.85 7.77 86.79 0.67 16.52 16 11 O -0.58 -22.20 16.34 -3.87 -0.06 -22.27 16 12 N -0.70 -17.32 5.45 -465.96 -2.54 -19.87 16 13 C 0.14 4.06 5.35 86.38 0.46 4.52 16 14 C 0.08 2.62 2.80 30.55 0.09 2.70 16 15 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 16 C 0.12 4.70 6.00 86.21 0.52 5.22 16 17 N -0.61 -30.17 3.05 -698.37 -2.13 -32.30 16 18 C -0.27 -14.25 9.65 84.03 0.81 -13.44 16 19 H 0.07 3.76 7.88 -2.91 -0.02 3.73 16 20 C -0.05 -2.71 4.95 84.86 0.42 -2.29 16 21 N -0.94 -54.48 11.15 21.65 0.24 -54.24 16 22 Si 0.97 43.66 29.58 68.60 2.03 45.69 16 23 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 24 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 25 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 26 C 0.14 6.66 5.44 86.35 0.47 7.13 16 27 C 0.05 1.90 6.98 72.08 0.50 2.40 16 28 O -0.39 -13.22 10.33 -148.98 -1.54 -14.76 16 29 C -0.03 -0.65 9.14 22.79 0.21 -0.44 16 30 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.12 -0.03 8.14 -2.39 -0.02 -0.05 16 33 H 0.42 0.47 6.85 -92.71 -0.64 -0.16 16 34 H 0.18 -0.36 6.39 -2.91 -0.02 -0.38 16 35 H 0.18 -0.26 8.06 -2.91 -0.02 -0.28 16 36 H 0.16 1.23 6.39 -2.91 -0.02 1.21 16 37 H 0.42 7.75 6.50 -92.71 -0.60 7.15 16 38 H 0.09 2.52 8.14 -2.39 -0.02 2.51 16 39 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.07 2.79 7.96 -2.38 -0.02 2.77 16 41 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 42 H 0.25 14.11 8.31 -92.71 -0.77 13.34 16 43 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 44 H 0.07 3.54 6.16 -2.39 -0.01 3.53 16 45 H 0.11 3.23 8.14 -2.39 -0.02 3.21 16 46 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 47 H 0.11 3.54 7.23 -2.91 -0.02 3.52 16 Total: -1.00 -84.22 389.76 -0.44 -84.66 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: -0.22 Total: 12.37 kcal Atomic # 6 Polarization: 22.01 SS G_CDS: 6.61 Total: 28.62 kcal Atomic # 7 Polarization: -108.95 SS G_CDS: -7.19 Total: -116.14 kcal Atomic # 8 Polarization: -53.53 SS G_CDS: -1.67 Total: -55.19 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Total: -84.22 -0.44 -84.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035608234.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.491 kcal (2) G-P(sol) polarization free energy of solvation -84.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds