Wall clock time and date at job start Wed Apr 1 2020 04:48:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46504 * 1
3 3 C 1.34774 * 120.00482 * 2 1
4 4 O 1.21556 * 119.99549 * 359.97438 * 3 2 1
5 5 C 1.47853 * 120.00446 * 179.97438 * 3 2 1
6 6 C 1.39710 * 120.07189 * 359.97438 * 5 3 2
7 7 C 1.38052 * 120.14521 * 179.97438 * 6 5 3
8 8 C 1.38098 * 120.29670 * 359.78739 * 7 6 5
9 9 C 1.39667 * 120.14613 * 0.46736 * 8 7 6
10 10 C 1.47857 * 120.07620 * 179.78535 * 9 8 7
11 11 O 1.21548 * 120.00276 * 179.71795 * 10 9 8
12 12 N 1.34783 * 119.99905 * 359.72855 * 10 9 8
13 13 C 1.46501 * 119.99965 * 179.97438 * 12 10 9
14 14 C 1.52994 * 109.47195 * 179.97438 * 13 12 10
15 15 H 1.08997 * 109.51228 * 304.90238 * 14 13 12
16 16 C 1.52874 * 109.62721 * 184.90811 * 14 13 12
17 17 N 1.47146 * 108.61038 * 187.90024 * 16 14 13
18 18 C 1.36938 * 120.98166 * 230.49961 * 17 16 14
19 19 H 1.08000 * 120.00437 * 26.46046 * 18 17 16
20 20 C 1.38817 * 120.00106 * 206.45559 * 18 17 16
21 21 N 1.31620 * 119.99788 * 16.42248 * 20 18 17
22 22 Si 1.86802 * 119.99867 * 196.14101 * 20 18 17
23 23 H 1.48493 * 109.47220 * 0.02562 * 22 20 18
24 24 H 1.48496 * 109.46793 * 120.00703 * 22 20 18
25 25 H 1.48501 * 109.47003 * 240.00077 * 22 20 18
26 26 C 1.47152 * 118.03553 * 50.22601 * 17 16 14
27 27 C 1.53291 * 108.38463 * 309.71610 * 26 17 16
28 28 O 1.42958 * 109.22268 * 52.30270 * 27 26 17
29 29 C 1.39296 * 120.07532 * 180.02562 * 5 3 2
30 30 H 1.08997 * 109.46899 * 300.00556 * 1 2 3
31 31 H 1.09003 * 109.46865 * 59.99457 * 1 2 3
32 32 H 1.08998 * 109.47349 * 179.97438 * 1 2 3
33 33 H 0.97001 * 120.00019 * 179.97438 * 2 1 3
34 34 H 1.08001 * 119.92697 * 0.02562 * 6 5 3
35 35 H 1.08002 * 119.85183 * 180.02562 * 7 6 5
36 36 H 1.08003 * 119.93050 * 180.23254 * 8 7 6
37 37 H 0.97002 * 119.99921 * 359.97438 * 12 10 9
38 38 H 1.09002 * 109.46907 * 59.99826 * 13 12 10
39 39 H 1.08995 * 109.47254 * 300.00014 * 13 12 10
40 40 H 1.09004 * 109.61801 * 68.08073 * 16 14 13
41 41 H 1.09002 * 109.52448 * 307.66775 * 16 14 13
42 42 H 0.96997 * 119.99644 * 179.97438 * 21 20 18
43 43 H 1.08995 * 109.68009 * 69.44637 * 26 17 16
44 44 H 1.08998 * 109.67837 * 189.95158 * 26 17 16
45 45 H 1.09002 * 109.50962 * 172.22809 * 27 26 17
46 46 H 1.08996 * 109.51452 * 292.32644 * 27 26 17
47 47 H 1.07995 * 120.14390 * 359.97438 * 29 5 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1390 1.1671 0.0000
4 8 1.5312 2.2198 -0.0005
5 6 3.6175 1.1671 0.0006
6 6 4.3176 -0.0419 0.0017
7 6 5.6981 -0.0437 0.0017
8 6 6.3963 1.1477 -0.0038
9 6 5.7090 2.3636 0.0004
10 6 6.4581 3.6383 -0.0007
11 8 5.8585 4.6956 -0.0021
12 7 7.8059 3.6279 -0.0003
13 6 8.5481 4.8910 -0.0019
14 6 10.0501 4.5998 -0.0004
15 1 10.2951 3.9549 0.8435
16 6 10.8272 5.9107 0.1211
17 7 12.2584 5.6277 -0.0703
18 6 13.1920 6.0791 0.8241
19 1 12.9127 6.2588 1.8518
20 6 14.4974 6.3057 0.4099
21 7 14.7729 6.4042 -0.8734
22 14 15.8617 6.4786 1.6741
23 1 15.2934 6.3348 3.0385
24 1 16.8815 5.4229 1.4493
25 1 16.4948 7.8151 1.5394
26 6 12.6563 4.8400 -1.2478
27 6 11.7897 3.5767 -1.2997
28 8 10.4114 3.9478 -1.2203
29 6 4.3156 2.3725 0.0011
30 1 -0.3633 0.5139 0.8899
31 1 -0.3633 0.5139 -0.8900
32 1 -0.3634 -1.0276 -0.0005
33 1 1.9500 -0.8400 0.0004
34 1 3.7776 -0.9772 0.0017
35 1 6.2345 -0.9811 0.0021
36 1 7.4763 1.1394 -0.0076
37 1 8.2844 2.7841 0.0011
38 1 8.2889 5.4659 0.8872
39 1 8.2895 5.4632 -0.8928
40 1 10.6670 6.3408 1.1098
41 1 10.4856 6.6088 -0.6432
42 1 15.6850 6.5628 -1.1627
43 1 12.5021 5.4285 -2.1522
44 1 13.7070 4.5621 -1.1655
45 1 11.9713 3.0489 -2.2360
46 1 12.0416 2.9276 -0.4611
47 1 3.7792 3.3099 0.0007
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001035608234.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:48:29
Heat of formation + Delta-G solvation = -87.153552 kcal
Electronic energy + Delta-G solvation = -29396.767727 eV
Core-core repulsion = 25158.308591 eV
Total energy + Delta-G solvation = -4238.459136 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 347.168 amu
Computer time = 1.18 seconds
Orbital eigenvalues (eV)
-41.60031 -40.81325 -40.05910 -38.88622 -36.55181 -35.87541 -35.80998 -33.51763
-32.98057 -32.15461 -31.92196 -29.27185 -28.03926 -27.20170 -25.21188 -24.87518
-24.12309 -23.11782 -22.30298 -21.61928 -21.01334 -19.73605 -18.87046 -17.82603
-17.61426 -17.38718 -17.23282 -16.91223 -16.75281 -16.38467 -16.22375 -16.00868
-15.70614 -15.53168 -15.34885 -15.02816 -14.90065 -14.79915 -14.58952 -14.34229
-14.17534 -13.83173 -13.32226 -13.24452 -13.19227 -13.02608 -12.91089 -12.72374
-12.50996 -12.45603 -12.16872 -12.05377 -11.87642 -11.37948 -11.27311 -11.09260
-10.80248 -10.55702 -10.41171 -10.29542 -10.03664 -9.97698 -8.75707 -7.91762
-5.39587 -0.41943 -0.03894 1.46095 1.48142 1.49988 1.58687 1.92758
2.00314 2.19903 2.47860 2.76031 2.83409 3.23701 3.46796 3.55754
3.59816 3.81312 3.95909 4.01115 4.05419 4.08684 4.24554 4.33514
4.41736 4.48378 4.51660 4.59489 4.61504 4.63094 4.71500 4.75878
4.87821 4.90346 4.95712 5.05061 5.14509 5.18604 5.24154 5.24426
5.28564 5.32864 5.56020 5.61743 5.71486 6.25286 6.32696 6.43934
6.45653 7.06069 7.09382 7.13035 7.73750 8.27315 9.14521
Molecular weight = 347.17amu
Principal moments of inertia in cm(-1)
A = 0.030522 B = 0.001740 C = 0.001708
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 917.162073 B =16086.670439 C =16391.491385
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.082 3.918
2 N -0.712 5.712
3 C 0.551 3.449
4 O -0.586 6.586
5 C -0.158 4.158
6 C -0.043 4.043
7 C -0.119 4.119
8 C -0.052 4.052
9 C -0.155 4.155
10 C 0.552 3.448
11 O -0.584 6.584
12 N -0.701 5.701
13 C 0.139 3.861
14 C 0.081 3.919
15 H 0.075 0.925
16 C 0.115 3.885
17 N -0.612 5.612
18 C -0.266 4.266
19 H 0.073 0.927
20 C -0.050 4.050
21 N -0.936 5.936
22 Si 0.971 3.029
23 H -0.265 1.265
24 H -0.287 1.287
25 H -0.295 1.295
26 C 0.142 3.858
27 C 0.054 3.946
28 O -0.389 6.389
29 C -0.026 4.026
30 H 0.049 0.951
31 H 0.049 0.951
32 H 0.119 0.881
33 H 0.421 0.579
34 H 0.176 0.824
35 H 0.182 0.818
36 H 0.157 0.843
37 H 0.416 0.584
38 H 0.089 0.911
39 H 0.062 0.938
40 H 0.072 0.928
41 H 0.015 0.985
42 H 0.251 0.749
43 H -0.003 1.003
44 H 0.068 0.932
45 H 0.110 0.890
46 H 0.055 0.945
47 H 0.111 0.889
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -21.731 -24.440 2.295 32.784
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.062 4.062
2 N -0.364 5.364
3 C 0.339 3.661
4 O -0.467 6.467
5 C -0.161 4.161
6 C -0.061 4.061
7 C -0.136 4.136
8 C -0.070 4.070
9 C -0.158 4.158
10 C 0.341 3.659
11 O -0.466 6.466
12 N -0.353 5.353
13 C 0.015 3.985
14 C 0.022 3.978
15 H 0.093 0.907
16 C -0.011 4.011
17 N -0.336 5.336
18 C -0.396 4.396
19 H 0.091 0.909
20 C -0.245 4.245
21 N -0.582 5.582
22 Si 0.799 3.201
23 H -0.189 1.189
24 H -0.213 1.213
25 H -0.222 1.222
26 C 0.016 3.984
27 C -0.023 4.023
28 O -0.308 6.308
29 C -0.046 4.046
30 H 0.068 0.932
31 H 0.068 0.932
32 H 0.138 0.862
33 H 0.259 0.741
34 H 0.193 0.807
35 H 0.199 0.801
36 H 0.174 0.826
37 H 0.254 0.746
38 H 0.107 0.893
39 H 0.080 0.920
40 H 0.090 0.910
41 H 0.033 0.967
42 H 0.061 0.939
43 H 0.015 0.985
44 H 0.086 0.914
45 H 0.128 0.872
46 H 0.074 0.926
47 H 0.129 0.871
Dipole moment (debyes) X Y Z Total
from point charges -22.570 -22.963 2.092 32.266
hybrid contribution 1.540 0.652 0.353 1.709
sum -21.030 -22.311 2.445 30.758
Atomic orbital electron populations
1.21744 0.78153 1.04743 1.01515 1.45578 1.08598 1.08073 1.74201
1.18549 0.87666 0.84131 0.75705 1.90792 1.70847 1.33295 1.51793
1.19835 0.92477 0.94743 1.09058 1.21941 0.95180 0.96874 0.92141
1.21580 0.93740 0.99194 0.99084 1.21920 1.01669 0.90934 0.92510
1.19757 0.93469 0.93410 1.09162 1.18649 0.82351 0.89188 0.75726
1.90774 1.69631 1.34095 1.52067 1.45667 1.05345 1.10401 1.73913
1.21231 0.88175 0.86271 1.02841 1.22534 0.92486 0.94912 0.87896
0.90734 1.21517 0.84806 0.94860 0.99941 1.44318 1.01416 1.60924
1.26965 1.19595 0.90336 1.38946 0.90674 0.90935 1.25834 1.00970
1.00093 0.97612 1.70198 1.19164 1.53811 1.15043 0.85149 0.79075
0.76752 0.79095 1.18912 1.21299 1.22215 1.21329 0.98593 0.90694
0.87787 1.23165 0.80728 0.96080 1.02331 1.87811 1.26614 1.77865
1.38549 1.21199 0.93004 0.98367 0.92074 0.93184 0.93232 0.86235
0.74073 0.80674 0.80069 0.82595 0.74610 0.89297 0.91990 0.90957
0.96687 0.93945 0.98518 0.91389 0.87215 0.92637 0.87101
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.08 0.67 10.70 127.77 1.37 2.04 16
2 N -0.71 -6.97 5.66 -487.46 -2.76 -9.73 16
3 C 0.55 11.09 7.77 86.79 0.67 11.76 16
4 O -0.59 -18.10 16.34 -3.89 -0.06 -18.17 16
5 C -0.16 -2.78 5.87 -20.12 -0.12 -2.89 16
6 C -0.04 -0.32 9.54 22.58 0.22 -0.10 16
7 C -0.12 -0.77 10.02 22.19 0.22 -0.54 16
8 C -0.05 -0.65 9.54 22.58 0.22 -0.43 16
9 C -0.15 -3.42 5.87 -20.12 -0.12 -3.53 16
10 C 0.55 15.85 7.77 86.79 0.67 16.52 16
11 O -0.58 -22.20 16.34 -3.87 -0.06 -22.27 16
12 N -0.70 -17.32 5.45 -465.96 -2.54 -19.87 16
13 C 0.14 4.06 5.35 86.38 0.46 4.52 16
14 C 0.08 2.62 2.80 30.55 0.09 2.70 16
15 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16
16 C 0.12 4.70 6.00 86.21 0.52 5.22 16
17 N -0.61 -30.17 3.05 -698.37 -2.13 -32.30 16
18 C -0.27 -14.25 9.65 84.03 0.81 -13.44 16
19 H 0.07 3.76 7.88 -2.91 -0.02 3.73 16
20 C -0.05 -2.71 4.95 84.86 0.42 -2.29 16
21 N -0.94 -54.48 11.15 21.65 0.24 -54.24 16
22 Si 0.97 43.66 29.58 68.60 2.03 45.69 16
23 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16
24 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16
25 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16
26 C 0.14 6.66 5.44 86.35 0.47 7.13 16
27 C 0.05 1.90 6.98 72.08 0.50 2.40 16
28 O -0.39 -13.22 10.33 -148.98 -1.54 -14.76 16
29 C -0.03 -0.65 9.14 22.79 0.21 -0.44 16
30 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16
31 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16
32 H 0.12 -0.03 8.14 -2.39 -0.02 -0.05 16
33 H 0.42 0.47 6.85 -92.71 -0.64 -0.16 16
34 H 0.18 -0.36 6.39 -2.91 -0.02 -0.38 16
35 H 0.18 -0.26 8.06 -2.91 -0.02 -0.28 16
36 H 0.16 1.23 6.39 -2.91 -0.02 1.21 16
37 H 0.42 7.75 6.50 -92.71 -0.60 7.15 16
38 H 0.09 2.52 8.14 -2.39 -0.02 2.51 16
39 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16
40 H 0.07 2.79 7.96 -2.38 -0.02 2.77 16
41 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16
42 H 0.25 14.11 8.31 -92.71 -0.77 13.34 16
43 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16
44 H 0.07 3.54 6.16 -2.39 -0.01 3.53 16
45 H 0.11 3.23 8.14 -2.39 -0.02 3.21 16
46 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16
47 H 0.11 3.54 7.23 -2.91 -0.02 3.52 16
Total: -1.00 -84.22 389.76 -0.44 -84.66
By element:
Atomic # 1 Polarization: 12.59 SS G_CDS: -0.22 Total: 12.37 kcal
Atomic # 6 Polarization: 22.01 SS G_CDS: 6.61 Total: 28.62 kcal
Atomic # 7 Polarization: -108.95 SS G_CDS: -7.19 Total: -116.14 kcal
Atomic # 8 Polarization: -53.53 SS G_CDS: -1.67 Total: -55.19 kcal
Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal
Total: -84.22 -0.44 -84.66 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001035608234.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -2.491 kcal
(2) G-P(sol) polarization free energy of solvation -84.224 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.715 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.439 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.662 kcal
(6) G-S(sol) free energy of system = (1) + (5) -87.154 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.18 seconds