Wall clock time and date at job start Wed Apr 1 2020 05:24:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35504 * 117.00335 * 2 1 4 4 C 1.39215 * 120.89559 * 0.02562 * 3 2 1 5 5 C 1.37903 * 119.39031 * 180.02562 * 4 3 2 6 6 N 1.32079 * 121.28847 * 359.97438 * 5 4 3 7 7 C 1.32182 * 121.97850 * 0.02562 * 6 5 4 8 8 O 1.35433 * 119.77384 * 179.97438 * 7 6 5 9 9 C 1.40293 * 120.44568 * 359.71833 * 7 6 5 10 10 C 1.47230 * 120.65259 * 180.30922 * 9 7 6 11 11 O 1.21623 * 119.99946 * 270.24429 * 10 9 7 12 12 N 1.34782 * 120.00122 * 90.24333 * 10 9 7 13 13 C 1.46944 * 120.43798 * 359.72561 * 12 10 9 14 14 C 1.54066 * 108.29570 * 125.72204 * 13 12 10 15 15 H 1.09007 * 110.51810 * 172.86454 * 14 13 12 16 16 C 1.53370 * 108.83666 * 294.50483 * 14 13 12 17 17 C 1.53010 * 109.24896 * 60.26008 * 16 14 13 18 18 C 1.53006 * 109.79917 * 60.57713 * 17 16 14 19 19 C 1.53365 * 109.27966 * 299.43705 * 18 17 16 20 20 H 1.08999 * 110.59635 * 178.09555 * 19 18 17 21 21 C 1.46940 * 120.43868 * 179.97438 * 12 10 9 22 22 N 1.47572 * 107.98154 * 56.34134 * 19 18 17 23 23 C 1.36930 * 121.61241 * 122.28112 * 22 19 18 24 24 H 1.08004 * 120.00118 * 152.32708 * 23 22 19 25 25 C 1.38812 * 120.00154 * 332.31943 * 23 22 19 26 26 N 1.31620 * 119.99932 * 341.74072 * 25 23 22 27 27 Si 1.86804 * 120.00210 * 161.73099 * 25 23 22 28 28 H 1.48495 * 109.46861 * 94.98097 * 27 25 23 29 29 H 1.48499 * 109.47291 * 214.98228 * 27 25 23 30 30 H 1.48504 * 109.46977 * 334.98411 * 27 25 23 31 31 H 1.09000 * 109.46799 * 299.99879 * 1 2 3 32 32 H 1.09006 * 109.46884 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47443 * 59.99989 * 1 2 3 34 34 H 1.08000 * 120.30903 * 0.02562 * 4 3 2 35 35 H 1.07991 * 119.35640 * 179.97438 * 5 4 3 36 36 H 0.96701 * 113.99763 * 89.99874 * 8 7 6 37 37 H 1.09003 * 109.61892 * 245.48047 * 13 12 10 38 38 H 1.08995 * 109.62285 * 6.04795 * 13 12 10 39 39 H 1.08997 * 109.50741 * 300.32768 * 16 14 13 40 40 H 1.08998 * 109.54250 * 180.21220 * 16 14 13 41 41 H 1.08996 * 109.41674 * 300.47764 * 17 16 14 42 42 H 1.08997 * 109.36051 * 180.64392 * 17 16 14 43 43 H 1.09006 * 109.50299 * 179.50075 * 18 17 16 44 44 H 1.09001 * 109.50206 * 59.38306 * 18 17 16 45 45 H 1.08995 * 109.63326 * 353.96383 * 21 12 10 46 46 H 1.09000 * 109.62787 * 114.35236 * 21 12 10 47 47 H 0.97001 * 119.99817 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2073 0.0000 4 6 1.3044 2.3866 0.0005 5 6 1.9626 3.5984 0.0000 6 7 3.2818 3.6625 -0.0005 7 6 4.0354 2.5765 -0.0011 8 8 5.3847 2.6942 -0.0021 9 6 3.4471 1.3029 0.0049 10 6 4.2821 0.0904 0.0111 11 8 4.6312 -0.4131 -1.0395 12 7 4.6597 -0.4618 1.1812 13 6 4.2485 0.1418 2.4563 14 6 3.5503 -0.9410 3.3011 15 1 3.3419 -0.5678 4.3039 16 6 2.2513 -1.3557 2.5989 17 6 2.5832 -1.9166 1.2145 18 6 3.4857 -3.1441 1.3553 19 6 4.7892 -2.7368 2.0531 20 1 5.4352 -3.6033 2.1948 21 6 5.4926 -1.6723 1.1987 22 7 4.4396 -2.1177 3.3463 23 6 4.9174 -2.6113 4.5308 24 1 5.0437 -1.9536 5.3782 25 6 5.2392 -3.9569 4.6427 26 7 4.7667 -4.8214 3.7698 27 14 6.3431 -4.5410 6.0319 28 1 5.5061 -5.0109 7.1649 29 1 7.1962 -5.6571 5.5504 30 1 7.2045 -3.4192 6.4846 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5138 -0.8900 34 1 0.2249 2.3528 0.0014 35 1 1.3882 4.5129 0.0000 36 1 5.7771 2.7284 0.8810 37 1 5.1262 0.5135 2.9852 38 1 3.5571 0.9628 2.2665 39 1 1.6012 -0.4872 2.4936 40 1 1.7455 -2.1196 3.1894 41 1 3.0968 -1.1545 0.6285 42 1 1.6603 -2.2013 0.7093 43 1 3.7117 -3.5448 0.3671 44 1 2.9769 -3.9036 1.9490 45 1 5.6195 -2.0442 0.1821 46 1 6.4672 -1.4400 1.6279 47 1 4.9919 -5.7616 3.8477 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039974987.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:24:15 Heat of formation + Delta-G solvation = -6.307813 kcal Electronic energy + Delta-G solvation = -33999.597048 eV Core-core repulsion = 29764.643646 eV Total energy + Delta-G solvation = -4234.953402 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.49335 -39.92206 -38.95390 -37.55150 -36.87281 -34.00320 -32.70608 -32.22680 -31.54938 -30.77487 -30.20581 -27.72627 -26.92229 -25.67167 -24.51316 -23.43004 -22.96703 -21.60991 -21.22514 -19.91579 -19.29250 -18.39498 -17.68773 -17.56898 -17.12936 -16.31049 -16.04022 -15.58176 -15.37520 -14.95826 -14.79246 -14.62628 -14.48452 -13.90210 -13.61155 -13.52214 -13.18877 -13.02429 -12.86531 -12.71496 -12.42959 -12.07317 -11.95532 -11.81567 -11.69391 -11.60494 -11.38306 -11.18503 -10.94519 -10.70389 -10.33454 -10.13277 -10.10649 -10.01887 -9.89649 -9.57077 -9.42041 -9.29265 -9.18256 -8.92752 -8.51682 -7.85968 -6.63591 -5.84836 -3.28169 0.63714 1.03508 2.78251 2.82152 3.21863 3.33126 3.41767 3.42529 3.46205 3.61140 4.33460 4.42076 4.60613 4.71915 4.76749 4.92573 4.95075 5.11297 5.22050 5.29817 5.31542 5.42702 5.62870 5.64908 5.67541 5.73409 5.90576 5.97588 6.01186 6.03977 6.18042 6.30254 6.47936 6.48345 6.54052 6.68610 6.76557 6.93887 6.94659 7.00474 7.11524 7.20403 7.29059 7.52387 7.62721 7.68956 7.72695 7.85813 8.34062 8.49129 9.10724 9.73099 10.34987 11.21734 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.017065 B = 0.004185 C = 0.003900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.402768 B = 6689.164935 C = 7176.945697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.280 6.280 3 C 0.214 3.786 4 C -0.276 4.276 5 C 0.168 3.832 6 N -0.525 5.525 7 C 0.377 3.623 8 O -0.470 6.470 9 C -0.219 4.219 10 C 0.580 3.420 11 O -0.537 6.537 12 N -0.580 5.580 13 C 0.096 3.904 14 C 0.153 3.847 15 H 0.075 0.925 16 C -0.116 4.116 17 C -0.125 4.125 18 C -0.116 4.116 19 C 0.179 3.821 20 H 0.116 0.884 21 C 0.093 3.907 22 N -0.576 5.576 23 C -0.252 4.252 24 H 0.066 0.934 25 C 0.006 3.994 26 N -0.894 5.894 27 Si 0.900 3.100 28 H -0.289 1.289 29 H -0.290 1.290 30 H -0.279 1.279 31 H 0.061 0.939 32 H 0.106 0.894 33 H 0.058 0.942 34 H 0.148 0.852 35 H 0.166 0.834 36 H 0.405 0.595 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.034 0.966 40 H 0.055 0.945 41 H 0.085 0.915 42 H 0.030 0.970 43 H 0.035 0.965 44 H 0.070 0.930 45 H 0.081 0.919 46 H 0.062 0.938 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.731 13.662 -4.985 16.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.189 6.189 3 C 0.159 3.841 4 C -0.297 4.297 5 C 0.011 3.989 6 N -0.248 5.248 7 C 0.198 3.802 8 O -0.277 6.277 9 C -0.227 4.227 10 C 0.367 3.633 11 O -0.415 6.415 12 N -0.312 5.312 13 C -0.028 4.028 14 C 0.045 3.955 15 H 0.093 0.907 16 C -0.156 4.156 17 C -0.162 4.162 18 C -0.155 4.155 19 C 0.072 3.928 20 H 0.133 0.867 21 C -0.030 4.030 22 N -0.297 5.297 23 C -0.381 4.381 24 H 0.084 0.916 25 C -0.193 4.193 26 N -0.538 5.538 27 Si 0.730 3.270 28 H -0.216 1.216 29 H -0.216 1.216 30 H -0.205 1.205 31 H 0.080 0.920 32 H 0.125 0.875 33 H 0.077 0.923 34 H 0.165 0.835 35 H 0.183 0.817 36 H 0.264 0.736 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.052 0.948 40 H 0.074 0.926 41 H 0.102 0.898 42 H 0.049 0.951 43 H 0.054 0.946 44 H 0.089 0.911 45 H 0.099 0.901 46 H 0.080 0.920 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -8.007 13.697 -6.089 16.995 hybrid contribution -0.227 -1.056 1.260 1.660 sum -8.235 12.641 -4.829 15.841 Atomic orbital electron populations 1.23227 0.77803 1.04918 1.01481 1.86468 1.21876 1.24487 1.86031 1.19146 0.90359 0.85708 0.88882 1.22154 1.01887 0.92627 1.13008 1.22353 0.88648 0.97239 0.90612 1.67273 1.07256 1.32114 1.18144 1.18757 0.84662 0.85531 0.91261 1.84731 1.13864 1.95122 1.34018 1.20344 0.91945 0.95886 1.14485 1.17265 0.79479 0.82447 0.84083 1.90788 1.56438 1.62926 1.31325 1.48119 1.50505 1.27663 1.04940 1.22456 0.99117 0.96448 0.84827 1.21243 0.89625 0.88658 0.95980 0.90668 1.21900 0.97358 0.98876 0.97418 1.22052 0.98466 0.99291 0.96430 1.21842 0.98007 0.97320 0.98329 1.21124 0.94681 0.93756 0.83224 0.86681 1.22567 0.93347 0.85358 1.01766 1.44379 1.52246 1.30872 1.02247 1.19109 1.37144 0.91268 0.90609 0.91589 1.25003 1.00495 0.95707 0.98094 1.69991 1.44527 1.01685 1.37589 0.86321 0.80654 0.78245 0.81757 1.21606 1.21574 1.20475 0.91995 0.87529 0.92295 0.83481 0.81707 0.73554 0.91591 0.91896 0.94778 0.92587 0.89765 0.95125 0.94629 0.91099 0.90115 0.91989 0.93580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.76 101.05 0.99 1.16 16 2 O -0.28 -3.79 5.45 -18.21 -0.10 -3.89 16 3 C 0.21 2.87 6.59 -38.32 -0.25 2.62 16 4 C -0.28 -2.71 9.09 -39.34 -0.36 -3.07 16 5 C 0.17 1.65 11.15 -17.57 -0.20 1.46 16 6 N -0.53 -6.83 10.37 -13.06 -0.14 -6.96 16 7 C 0.38 5.45 7.77 -16.63 -0.13 5.33 16 8 O -0.47 -6.49 13.02 -17.99 -0.23 -6.72 16 9 C -0.22 -3.43 3.64 -104.58 -0.38 -3.81 16 10 C 0.58 10.81 4.08 -12.60 -0.05 10.76 16 11 O -0.54 -11.97 16.50 5.26 0.09 -11.88 16 12 N -0.58 -10.49 1.64 -173.32 -0.28 -10.77 16 13 C 0.10 1.57 5.84 -3.24 -0.02 1.56 16 14 C 0.15 2.91 3.61 -66.59 -0.24 2.67 16 15 H 0.08 1.39 8.03 -51.93 -0.42 0.98 16 16 C -0.12 -2.11 5.51 -26.53 -0.15 -2.25 16 17 C -0.12 -2.37 3.59 -26.72 -0.10 -2.47 16 18 C -0.12 -2.53 5.56 -26.54 -0.15 -2.68 16 19 C 0.18 4.02 2.65 -66.87 -0.18 3.84 16 20 H 0.12 2.94 5.90 -51.93 -0.31 2.63 16 21 C 0.09 1.86 5.88 -3.51 -0.02 1.84 16 22 N -0.58 -13.12 2.53 -155.17 -0.39 -13.51 16 23 C -0.25 -6.37 9.72 -15.06 -0.15 -6.52 16 24 H 0.07 1.64 7.89 -52.48 -0.41 1.23 16 25 C 0.01 0.16 4.99 -17.43 -0.09 0.07 16 26 N -0.89 -24.22 10.98 55.49 0.61 -23.61 16 27 Si 0.90 20.66 29.59 -169.99 -5.03 15.63 16 28 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 29 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 30 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 31 H 0.06 0.43 7.71 -51.93 -0.40 0.03 16 32 H 0.11 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.06 0.40 7.71 -51.93 -0.40 0.00 16 34 H 0.15 0.95 6.45 -52.49 -0.34 0.62 16 35 H 0.17 0.99 8.06 -52.49 -0.42 0.56 16 36 H 0.41 3.72 9.06 45.56 0.41 4.13 16 37 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.06 0.91 6.21 -51.93 -0.32 0.59 16 39 H 0.03 0.53 7.57 -51.93 -0.39 0.14 16 40 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.08 1.60 1.41 -52.43 -0.07 1.52 16 42 H 0.03 0.56 7.45 -51.93 -0.39 0.17 16 43 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.07 1.74 7.98 -51.93 -0.41 1.32 16 45 H 0.08 1.67 6.98 -51.93 -0.36 1.30 16 46 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 47 H 0.25 6.76 8.31 -40.82 -0.34 6.42 16 LS Contribution 358.26 15.07 5.40 5.40 Total: -1.00 -32.83 358.26 -7.03 -39.86 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -5.49 Total: 5.93 kcal Atomic # 6 Polarization: 11.97 SS G_CDS: -1.46 Total: 10.51 kcal Atomic # 7 Polarization: -54.65 SS G_CDS: -0.20 Total: -54.85 kcal Atomic # 8 Polarization: -22.25 SS G_CDS: -0.25 Total: -22.49 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.03 Total: 15.63 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.83 -7.03 -39.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039974987.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.556 kcal (2) G-P(sol) polarization free energy of solvation -32.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds