Wall clock time and date at job start Wed Apr 1 2020 05:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.36013 * 117.00103 * 2 1 4 4 C 1.35849 * 120.31532 * 359.97438 * 3 2 1 5 5 N 1.35447 * 120.77668 * 179.76045 * 4 3 2 6 6 H 0.97001 * 119.29083 * 180.25220 * 5 4 3 7 7 C 1.36418 * 121.40980 * 0.52494 * 5 4 3 8 8 C 1.48074 * 119.72197 * 179.75233 * 7 5 4 9 9 O 1.21512 * 120.00295 * 188.28385 * 8 7 5 10 10 N 1.34779 * 119.99376 * 8.56185 * 8 7 5 11 11 C 1.47563 * 125.67720 * 5.07872 * 10 8 7 12 12 C 1.55433 * 104.87720 * 156.03861 * 11 10 8 13 13 C 1.53651 * 101.31296 * 35.82996 * 12 11 10 14 14 C 1.53661 * 111.41322 * 87.06503 * 13 12 11 15 15 C 1.55192 * 101.41587 * 155.02579 * 14 13 12 16 16 N 1.47558 * 105.00642 * 324.50460 * 15 14 13 17 17 C 1.36943 * 125.67458 * 203.83023 * 16 15 14 18 18 H 1.07995 * 119.99915 * 165.34444 * 17 16 15 19 19 C 1.38804 * 119.99671 * 345.34603 * 17 16 15 20 20 N 1.31627 * 120.00274 * 350.89079 * 19 17 16 21 21 Si 1.86798 * 119.99940 * 170.89279 * 19 17 16 22 22 H 1.48506 * 109.47456 * 94.95833 * 21 19 17 23 23 H 1.48503 * 109.47501 * 214.95831 * 21 19 17 24 24 H 1.48502 * 109.47281 * 334.96029 * 21 19 17 25 25 C 1.47400 * 108.65164 * 23.86362 * 16 15 14 26 26 C 1.47405 * 125.67211 * 185.39540 * 10 8 7 27 27 C 1.36183 * 120.56012 * 359.47288 * 7 5 4 28 28 C 1.41573 * 120.31224 * 179.97438 * 3 2 1 29 29 O 1.22265 * 120.65720 * 0.02562 * 28 3 2 30 30 H 1.08994 * 109.47484 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47291 * 300.00056 * 1 2 3 32 32 H 1.09005 * 109.46852 * 59.99485 * 1 2 3 33 33 H 1.08003 * 119.61160 * 359.97438 * 4 3 2 34 34 H 1.08993 * 110.33676 * 275.03089 * 11 10 8 35 35 H 1.09003 * 110.33242 * 37.26304 * 11 10 8 36 36 H 1.08999 * 111.25421 * 277.75743 * 12 11 10 37 37 H 1.09008 * 110.94681 * 153.77432 * 12 11 10 38 38 H 1.08998 * 111.03078 * 273.05561 * 14 13 12 39 39 H 1.08992 * 111.03735 * 36.99324 * 14 13 12 40 40 H 1.09002 * 110.32996 * 205.62189 * 15 14 13 41 41 H 1.09000 * 110.42063 * 83.43398 * 15 14 13 42 42 H 0.96996 * 119.99951 * 180.02562 * 20 19 17 43 43 H 1.09001 * 109.99160 * 238.53253 * 25 16 15 44 44 H 1.09004 * 109.98517 * 117.23079 * 25 16 15 45 45 H 1.09005 * 109.98406 * 301.45046 * 26 10 8 46 46 H 1.08999 * 109.98769 * 62.71643 * 26 10 8 47 47 H 1.08003 * 120.40094 * 180.23569 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 1.3129 2.3553 -0.0005 5 7 1.9181 3.5670 0.0043 6 1 1.3733 4.3696 0.0076 7 6 3.2773 3.6829 -0.0008 8 6 3.8996 5.0265 -0.0007 9 8 5.0992 5.1405 -0.1568 10 7 3.1360 6.1226 0.1781 11 6 1.6934 6.1253 0.4885 12 6 1.4377 7.4908 1.1857 13 6 2.4025 8.4069 0.4171 14 6 1.7463 8.9750 -0.8510 15 6 2.5642 10.2767 -1.0633 16 7 2.8529 10.7725 0.2961 17 6 3.1301 12.0713 0.6304 18 1 3.0953 12.3821 1.6641 19 6 3.4558 12.9883 -0.3594 20 7 3.6742 12.5778 -1.5908 21 14 3.5843 14.8049 0.0560 22 1 4.9999 15.1478 0.3453 23 1 3.1051 15.6112 -1.0953 24 1 2.7499 15.1002 1.2485 25 6 2.7942 9.6372 1.2344 26 6 3.6017 7.5184 0.0896 27 6 4.0668 2.5732 -0.0002 28 6 3.4598 1.2936 0.0005 29 8 4.1430 0.2796 0.0006 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 0.2344 2.2974 -0.0014 34 1 1.1086 6.0495 -0.4281 35 1 1.4497 5.3046 1.1631 36 1 1.6971 7.4490 2.2435 37 1 0.4041 7.8097 1.0508 38 1 1.8688 8.2942 -1.6933 39 1 0.6932 9.1982 -0.6802 40 1 1.9749 11.0083 -1.6162 41 1 3.4922 10.0607 -1.5928 42 1 3.9022 13.2185 -2.2824 43 1 2.0454 9.8276 2.0033 44 1 3.7703 9.4834 1.6946 45 1 4.4010 7.6908 0.8104 46 1 3.9579 7.7291 -0.9188 47 1 5.1427 2.6680 -0.0004 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041476740.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:11 Heat of formation + Delta-G solvation = -7.774164 kcal Electronic energy + Delta-G solvation = -30745.760413 eV Core-core repulsion = 26510.743425 eV Total energy + Delta-G solvation = -4235.016988 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.92615 -40.48508 -39.00739 -38.21576 -37.90123 -36.05085 -32.99356 -31.91200 -31.26754 -30.79566 -29.38613 -28.68498 -27.97021 -26.31413 -24.93661 -23.63777 -23.36295 -22.91441 -21.10678 -20.48784 -19.15797 -19.13187 -18.33534 -17.44669 -16.83923 -16.60244 -16.52476 -16.27181 -16.11748 -15.39969 -14.89042 -14.87031 -14.76309 -14.58680 -14.25028 -14.14881 -13.94271 -13.55443 -13.28242 -13.14398 -13.10792 -12.74122 -12.42832 -12.18313 -11.93592 -11.89447 -11.80526 -11.58431 -11.50950 -10.96992 -10.87542 -10.60751 -10.45339 -10.21214 -10.06671 -9.98626 -9.81583 -9.77308 -9.76065 -9.01030 -8.67389 -7.98624 -6.87903 -5.85032 -3.19755 0.37715 0.84951 2.18878 2.43862 2.54045 2.87586 3.33541 3.39699 3.41269 3.42036 3.73367 4.02408 4.11892 4.29086 4.39823 4.47661 4.55040 4.61775 4.69888 4.70621 4.75651 4.90253 5.05142 5.11885 5.17368 5.38019 5.42243 5.50017 5.61607 5.64836 5.70114 5.81646 5.84066 5.90102 5.96292 6.11693 6.24845 6.33111 6.33925 6.35609 6.55802 6.62792 6.83364 7.02772 7.30579 7.47478 7.61106 7.67268 7.75431 8.15289 9.08620 9.70324 10.38004 11.28473 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.028474 B = 0.002146 C = 0.002063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.114994 B =13044.383778 C =13566.922200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.288 6.288 3 C -0.033 4.033 4 C 0.024 3.976 5 N -0.574 5.574 6 H 0.424 0.576 7 C 0.130 3.870 8 C 0.569 3.431 9 O -0.499 6.499 10 N -0.612 5.612 11 C 0.071 3.929 12 C -0.111 4.111 13 C -0.080 4.080 14 C -0.134 4.134 15 C 0.174 3.826 16 N -0.601 5.601 17 C -0.234 4.234 18 H 0.075 0.925 19 C -0.004 4.004 20 N -0.915 5.915 21 Si 0.910 3.090 22 H -0.288 1.288 23 H -0.290 1.290 24 H -0.280 1.280 25 C 0.150 3.850 26 C 0.127 3.873 27 C -0.213 4.213 28 C 0.401 3.599 29 O -0.497 6.497 30 H 0.103 0.897 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.170 0.830 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.092 0.908 38 H 0.061 0.939 39 H 0.066 0.934 40 H 0.061 0.939 41 H 0.032 0.968 42 H 0.254 0.746 43 H 0.031 0.969 44 H 0.027 0.973 45 H 0.080 0.920 46 H 0.081 0.919 47 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.769 -18.803 3.468 22.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.200 6.200 3 C -0.084 4.084 4 C -0.104 4.104 5 N -0.197 5.197 6 H 0.273 0.727 7 C 0.017 3.983 8 C 0.355 3.645 9 O -0.372 6.372 10 N -0.347 5.347 11 C -0.052 4.052 12 C -0.150 4.150 13 C -0.081 4.081 14 C -0.173 4.173 15 C 0.049 3.951 16 N -0.328 5.328 17 C -0.362 4.362 18 H 0.093 0.907 19 C -0.201 4.201 20 N -0.561 5.561 21 Si 0.740 3.260 22 H -0.215 1.215 23 H -0.216 1.216 24 H -0.205 1.205 25 C 0.024 3.976 26 C 0.006 3.994 27 C -0.240 4.240 28 C 0.290 3.710 29 O -0.381 6.381 30 H 0.121 0.879 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.187 0.813 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.101 0.899 37 H 0.111 0.889 38 H 0.079 0.921 39 H 0.085 0.915 40 H 0.079 0.921 41 H 0.050 0.950 42 H 0.064 0.936 43 H 0.049 0.951 44 H 0.045 0.955 45 H 0.098 0.902 46 H 0.100 0.900 47 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -11.562 -19.349 3.256 22.774 hybrid contribution -0.618 1.502 0.085 1.626 sum -12.179 -17.847 3.341 21.864 Atomic orbital electron populations 1.23142 0.79115 1.04574 1.00947 1.86281 1.20365 1.24322 1.89010 1.20447 0.94830 0.84699 1.08408 1.21699 0.98843 0.84429 1.05382 1.42016 1.05510 1.09326 1.62858 0.72743 1.20340 0.83076 0.95405 0.99479 1.17549 0.86323 0.82040 0.78621 1.90887 1.12985 1.85026 1.48335 1.48711 1.09775 1.06980 1.69197 1.22850 0.81957 1.00499 0.99925 1.22698 1.00826 0.91679 0.99772 1.21545 0.93935 0.94940 0.97730 1.22935 0.99785 0.99737 0.94804 1.21422 0.95943 0.90290 0.87452 1.44564 1.82564 1.02981 1.02644 1.18970 1.40577 0.83298 0.93385 0.90719 1.24889 1.00552 0.98589 0.96060 1.69942 1.52191 1.32926 1.01067 0.86140 0.77788 0.84786 0.77241 1.21505 1.21599 1.20543 1.21100 0.97958 0.86018 0.92524 1.22043 0.97069 0.76868 1.03380 1.22487 1.02338 0.90328 1.08889 1.16780 0.86125 0.89765 0.78301 1.90862 1.65713 1.37494 1.43986 0.87853 0.92710 0.92710 0.81328 0.90116 0.90088 0.89874 0.88924 0.92073 0.91510 0.92069 0.94987 0.93599 0.95122 0.95514 0.90211 0.90033 0.81335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.08 9.81 101.05 0.99 1.08 16 2 O -0.29 -3.06 10.33 -35.61 -0.37 -3.43 16 3 C -0.03 -0.35 6.71 -39.17 -0.26 -0.61 16 4 C 0.02 0.15 10.22 -16.81 -0.17 -0.02 16 5 N -0.57 -3.95 4.61 -9.58 -0.04 -3.99 16 6 H 0.42 1.92 3.73 -40.82 -0.15 1.77 16 7 C 0.13 1.35 6.66 -82.53 -0.55 0.80 16 8 C 0.57 7.19 7.81 -12.22 -0.10 7.09 16 9 O -0.50 -8.24 16.65 5.36 0.09 -8.15 16 10 N -0.61 -6.78 3.34 -171.73 -0.57 -7.35 16 11 C 0.07 0.49 4.99 -2.17 -0.01 0.48 16 12 C -0.11 -0.98 5.94 -25.10 -0.15 -1.13 16 13 C -0.08 -1.09 0.61 -154.02 -0.09 -1.18 16 14 C -0.13 -2.01 5.85 -25.23 -0.15 -2.16 16 15 C 0.17 3.77 5.34 -2.30 -0.01 3.76 16 16 N -0.60 -14.05 3.41 -170.41 -0.58 -14.63 16 17 C -0.23 -6.17 10.22 -15.06 -0.15 -6.33 16 18 H 0.08 1.92 7.84 -52.49 -0.41 1.51 16 19 C 0.00 -0.09 5.39 -17.43 -0.09 -0.19 16 20 N -0.92 -25.84 10.87 55.49 0.60 -25.23 16 21 Si 0.91 21.26 29.56 -169.99 -5.03 16.23 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 24 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 25 C 0.15 2.70 6.51 -3.65 -0.02 2.68 16 26 C 0.13 1.77 6.03 -3.65 -0.02 1.75 16 27 C -0.21 -2.65 9.53 -39.03 -0.37 -3.02 16 28 C 0.40 5.57 6.78 -37.02 -0.25 5.32 16 29 O -0.50 -8.88 17.71 -11.15 -0.20 -9.08 16 30 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.05 0.16 7.66 -51.93 -0.40 -0.23 16 32 H 0.05 0.17 7.66 -51.93 -0.40 -0.23 16 33 H 0.17 0.40 6.21 -52.48 -0.33 0.08 16 34 H 0.08 0.40 7.57 -51.93 -0.39 0.01 16 35 H 0.08 0.37 6.22 -51.93 -0.32 0.05 16 36 H 0.08 0.71 8.09 -51.93 -0.42 0.29 16 37 H 0.09 0.69 7.78 -51.92 -0.40 0.29 16 38 H 0.06 0.82 7.94 -51.93 -0.41 0.40 16 39 H 0.07 0.93 7.82 -51.93 -0.41 0.52 16 40 H 0.06 1.50 7.27 -51.93 -0.38 1.12 16 41 H 0.03 0.78 7.96 -51.93 -0.41 0.36 16 42 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 43 H 0.03 0.53 7.86 -51.93 -0.41 0.12 16 44 H 0.03 0.51 7.41 -51.93 -0.39 0.12 16 45 H 0.08 1.22 7.44 -51.93 -0.39 0.84 16 46 H 0.08 1.28 7.78 -51.93 -0.40 0.87 16 47 H 0.17 2.20 7.60 -52.48 -0.40 1.80 16 LS Contribution 374.48 15.07 5.64 5.64 Total: -1.00 -35.90 374.48 -8.25 -44.14 By element: Atomic # 1 Polarization: 3.89 SS G_CDS: -6.37 Total: -2.48 kcal Atomic # 6 Polarization: 9.74 SS G_CDS: -1.42 Total: 8.33 kcal Atomic # 7 Polarization: -50.61 SS G_CDS: -0.60 Total: -51.21 kcal Atomic # 8 Polarization: -20.18 SS G_CDS: -0.48 Total: -20.65 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.03 Total: 16.23 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -35.90 -8.25 -44.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041476740.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.367 kcal (2) G-P(sol) polarization free energy of solvation -35.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds