Wall clock time and date at job start Wed Apr 1 2020 05:29:11
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42895 * 1
3 3 C 1.36013 * 117.00103 * 2 1
4 4 C 1.35849 * 120.31532 * 359.97438 * 3 2 1
5 5 N 1.35447 * 120.77668 * 179.76045 * 4 3 2
6 6 H 0.97001 * 119.29083 * 180.25220 * 5 4 3
7 7 C 1.36418 * 121.40980 * 0.52494 * 5 4 3
8 8 C 1.48074 * 119.72197 * 179.75233 * 7 5 4
9 9 O 1.21512 * 120.00295 * 188.28385 * 8 7 5
10 10 N 1.34779 * 119.99376 * 8.56185 * 8 7 5
11 11 C 1.47563 * 125.67720 * 5.07872 * 10 8 7
12 12 C 1.55433 * 104.87720 * 156.03861 * 11 10 8
13 13 C 1.53651 * 101.31296 * 35.82996 * 12 11 10
14 14 C 1.53661 * 111.41322 * 87.06503 * 13 12 11
15 15 C 1.55192 * 101.41587 * 155.02579 * 14 13 12
16 16 N 1.47558 * 105.00642 * 324.50460 * 15 14 13
17 17 C 1.36943 * 125.67458 * 203.83023 * 16 15 14
18 18 H 1.07995 * 119.99915 * 165.34444 * 17 16 15
19 19 C 1.38804 * 119.99671 * 345.34603 * 17 16 15
20 20 N 1.31627 * 120.00274 * 350.89079 * 19 17 16
21 21 Si 1.86798 * 119.99940 * 170.89279 * 19 17 16
22 22 H 1.48506 * 109.47456 * 94.95833 * 21 19 17
23 23 H 1.48503 * 109.47501 * 214.95831 * 21 19 17
24 24 H 1.48502 * 109.47281 * 334.96029 * 21 19 17
25 25 C 1.47400 * 108.65164 * 23.86362 * 16 15 14
26 26 C 1.47405 * 125.67211 * 185.39540 * 10 8 7
27 27 C 1.36183 * 120.56012 * 359.47288 * 7 5 4
28 28 C 1.41573 * 120.31224 * 179.97438 * 3 2 1
29 29 O 1.22265 * 120.65720 * 0.02562 * 28 3 2
30 30 H 1.08994 * 109.47484 * 179.97438 * 1 2 3
31 31 H 1.08997 * 109.47291 * 300.00056 * 1 2 3
32 32 H 1.09005 * 109.46852 * 59.99485 * 1 2 3
33 33 H 1.08003 * 119.61160 * 359.97438 * 4 3 2
34 34 H 1.08993 * 110.33676 * 275.03089 * 11 10 8
35 35 H 1.09003 * 110.33242 * 37.26304 * 11 10 8
36 36 H 1.08999 * 111.25421 * 277.75743 * 12 11 10
37 37 H 1.09008 * 110.94681 * 153.77432 * 12 11 10
38 38 H 1.08998 * 111.03078 * 273.05561 * 14 13 12
39 39 H 1.08992 * 111.03735 * 36.99324 * 14 13 12
40 40 H 1.09002 * 110.32996 * 205.62189 * 15 14 13
41 41 H 1.09000 * 110.42063 * 83.43398 * 15 14 13
42 42 H 0.96996 * 119.99951 * 180.02562 * 20 19 17
43 43 H 1.09001 * 109.99160 * 238.53253 * 25 16 15
44 44 H 1.09004 * 109.98517 * 117.23079 * 25 16 15
45 45 H 1.09005 * 109.98406 * 301.45046 * 26 10 8
46 46 H 1.08999 * 109.98769 * 62.71643 * 26 10 8
47 47 H 1.08003 * 120.40094 * 180.23569 * 27 7 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4289 0.0000 0.0000
3 6 2.0465 1.2119 0.0000
4 6 1.3129 2.3553 -0.0005
5 7 1.9181 3.5670 0.0043
6 1 1.3733 4.3696 0.0076
7 6 3.2773 3.6829 -0.0008
8 6 3.8996 5.0265 -0.0007
9 8 5.0992 5.1405 -0.1568
10 7 3.1360 6.1226 0.1781
11 6 1.6934 6.1253 0.4885
12 6 1.4377 7.4908 1.1857
13 6 2.4025 8.4069 0.4171
14 6 1.7463 8.9750 -0.8510
15 6 2.5642 10.2767 -1.0633
16 7 2.8529 10.7725 0.2961
17 6 3.1301 12.0713 0.6304
18 1 3.0953 12.3821 1.6641
19 6 3.4558 12.9883 -0.3594
20 7 3.6742 12.5778 -1.5908
21 14 3.5843 14.8049 0.0560
22 1 4.9999 15.1478 0.3453
23 1 3.1051 15.6112 -1.0953
24 1 2.7499 15.1002 1.2485
25 6 2.7942 9.6372 1.2344
26 6 3.6017 7.5184 0.0896
27 6 4.0668 2.5732 -0.0002
28 6 3.4598 1.2936 0.0005
29 8 4.1430 0.2796 0.0006
30 1 -0.3634 -1.0276 -0.0005
31 1 -0.3634 0.5138 0.8899
32 1 -0.3633 0.5139 -0.8900
33 1 0.2344 2.2974 -0.0014
34 1 1.1086 6.0495 -0.4281
35 1 1.4497 5.3046 1.1631
36 1 1.6971 7.4490 2.2435
37 1 0.4041 7.8097 1.0508
38 1 1.8688 8.2942 -1.6933
39 1 0.6932 9.1982 -0.6802
40 1 1.9749 11.0083 -1.6162
41 1 3.4922 10.0607 -1.5928
42 1 3.9022 13.2185 -2.2824
43 1 2.0454 9.8276 2.0033
44 1 3.7703 9.4834 1.6946
45 1 4.4010 7.6908 0.8104
46 1 3.9579 7.7291 -0.9188
47 1 5.1427 2.6680 -0.0004
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001041476740.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:29:11
Heat of formation + Delta-G solvation = -7.774164 kcal
Electronic energy + Delta-G solvation = -30745.760413 eV
Core-core repulsion = 26510.743425 eV
Total energy + Delta-G solvation = -4235.016988 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 347.168 amu
Computer time = 1.31 seconds
Orbital eigenvalues (eV)
-41.92615 -40.48508 -39.00739 -38.21576 -37.90123 -36.05085 -32.99356 -31.91200
-31.26754 -30.79566 -29.38613 -28.68498 -27.97021 -26.31413 -24.93661 -23.63777
-23.36295 -22.91441 -21.10678 -20.48784 -19.15797 -19.13187 -18.33534 -17.44669
-16.83923 -16.60244 -16.52476 -16.27181 -16.11748 -15.39969 -14.89042 -14.87031
-14.76309 -14.58680 -14.25028 -14.14881 -13.94271 -13.55443 -13.28242 -13.14398
-13.10792 -12.74122 -12.42832 -12.18313 -11.93592 -11.89447 -11.80526 -11.58431
-11.50950 -10.96992 -10.87542 -10.60751 -10.45339 -10.21214 -10.06671 -9.98626
-9.81583 -9.77308 -9.76065 -9.01030 -8.67389 -7.98624 -6.87903 -5.85032
-3.19755 0.37715 0.84951 2.18878 2.43862 2.54045 2.87586 3.33541
3.39699 3.41269 3.42036 3.73367 4.02408 4.11892 4.29086 4.39823
4.47661 4.55040 4.61775 4.69888 4.70621 4.75651 4.90253 5.05142
5.11885 5.17368 5.38019 5.42243 5.50017 5.61607 5.64836 5.70114
5.81646 5.84066 5.90102 5.96292 6.11693 6.24845 6.33111 6.33925
6.35609 6.55802 6.62792 6.83364 7.02772 7.30579 7.47478 7.61106
7.67268 7.75431 8.15289 9.08620 9.70324 10.38004 11.28473
Molecular weight = 347.17amu
Principal moments of inertia in cm(-1)
A = 0.028474 B = 0.002146 C = 0.002063
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 983.114994 B =13044.383778 C =13566.922200
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.017 3.983
2 O -0.288 6.288
3 C -0.033 4.033
4 C 0.024 3.976
5 N -0.574 5.574
6 H 0.424 0.576
7 C 0.130 3.870
8 C 0.569 3.431
9 O -0.499 6.499
10 N -0.612 5.612
11 C 0.071 3.929
12 C -0.111 4.111
13 C -0.080 4.080
14 C -0.134 4.134
15 C 0.174 3.826
16 N -0.601 5.601
17 C -0.234 4.234
18 H 0.075 0.925
19 C -0.004 4.004
20 N -0.915 5.915
21 Si 0.910 3.090
22 H -0.288 1.288
23 H -0.290 1.290
24 H -0.280 1.280
25 C 0.150 3.850
26 C 0.127 3.873
27 C -0.213 4.213
28 C 0.401 3.599
29 O -0.497 6.497
30 H 0.103 0.897
31 H 0.054 0.946
32 H 0.054 0.946
33 H 0.170 0.830
34 H 0.081 0.919
35 H 0.081 0.919
36 H 0.083 0.917
37 H 0.092 0.908
38 H 0.061 0.939
39 H 0.066 0.934
40 H 0.061 0.939
41 H 0.032 0.968
42 H 0.254 0.746
43 H 0.031 0.969
44 H 0.027 0.973
45 H 0.080 0.920
46 H 0.081 0.919
47 H 0.169 0.831
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.769 -18.803 3.468 22.992
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.078 4.078
2 O -0.200 6.200
3 C -0.084 4.084
4 C -0.104 4.104
5 N -0.197 5.197
6 H 0.273 0.727
7 C 0.017 3.983
8 C 0.355 3.645
9 O -0.372 6.372
10 N -0.347 5.347
11 C -0.052 4.052
12 C -0.150 4.150
13 C -0.081 4.081
14 C -0.173 4.173
15 C 0.049 3.951
16 N -0.328 5.328
17 C -0.362 4.362
18 H 0.093 0.907
19 C -0.201 4.201
20 N -0.561 5.561
21 Si 0.740 3.260
22 H -0.215 1.215
23 H -0.216 1.216
24 H -0.205 1.205
25 C 0.024 3.976
26 C 0.006 3.994
27 C -0.240 4.240
28 C 0.290 3.710
29 O -0.381 6.381
30 H 0.121 0.879
31 H 0.073 0.927
32 H 0.073 0.927
33 H 0.187 0.813
34 H 0.099 0.901
35 H 0.099 0.901
36 H 0.101 0.899
37 H 0.111 0.889
38 H 0.079 0.921
39 H 0.085 0.915
40 H 0.079 0.921
41 H 0.050 0.950
42 H 0.064 0.936
43 H 0.049 0.951
44 H 0.045 0.955
45 H 0.098 0.902
46 H 0.100 0.900
47 H 0.187 0.813
Dipole moment (debyes) X Y Z Total
from point charges -11.562 -19.349 3.256 22.774
hybrid contribution -0.618 1.502 0.085 1.626
sum -12.179 -17.847 3.341 21.864
Atomic orbital electron populations
1.23142 0.79115 1.04574 1.00947 1.86281 1.20365 1.24322 1.89010
1.20447 0.94830 0.84699 1.08408 1.21699 0.98843 0.84429 1.05382
1.42016 1.05510 1.09326 1.62858 0.72743 1.20340 0.83076 0.95405
0.99479 1.17549 0.86323 0.82040 0.78621 1.90887 1.12985 1.85026
1.48335 1.48711 1.09775 1.06980 1.69197 1.22850 0.81957 1.00499
0.99925 1.22698 1.00826 0.91679 0.99772 1.21545 0.93935 0.94940
0.97730 1.22935 0.99785 0.99737 0.94804 1.21422 0.95943 0.90290
0.87452 1.44564 1.82564 1.02981 1.02644 1.18970 1.40577 0.83298
0.93385 0.90719 1.24889 1.00552 0.98589 0.96060 1.69942 1.52191
1.32926 1.01067 0.86140 0.77788 0.84786 0.77241 1.21505 1.21599
1.20543 1.21100 0.97958 0.86018 0.92524 1.22043 0.97069 0.76868
1.03380 1.22487 1.02338 0.90328 1.08889 1.16780 0.86125 0.89765
0.78301 1.90862 1.65713 1.37494 1.43986 0.87853 0.92710 0.92710
0.81328 0.90116 0.90088 0.89874 0.88924 0.92073 0.91510 0.92069
0.94987 0.93599 0.95122 0.95514 0.90211 0.90033 0.81335
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.08 9.81 101.05 0.99 1.08 16
2 O -0.29 -3.06 10.33 -35.61 -0.37 -3.43 16
3 C -0.03 -0.35 6.71 -39.17 -0.26 -0.61 16
4 C 0.02 0.15 10.22 -16.81 -0.17 -0.02 16
5 N -0.57 -3.95 4.61 -9.58 -0.04 -3.99 16
6 H 0.42 1.92 3.73 -40.82 -0.15 1.77 16
7 C 0.13 1.35 6.66 -82.53 -0.55 0.80 16
8 C 0.57 7.19 7.81 -12.22 -0.10 7.09 16
9 O -0.50 -8.24 16.65 5.36 0.09 -8.15 16
10 N -0.61 -6.78 3.34 -171.73 -0.57 -7.35 16
11 C 0.07 0.49 4.99 -2.17 -0.01 0.48 16
12 C -0.11 -0.98 5.94 -25.10 -0.15 -1.13 16
13 C -0.08 -1.09 0.61 -154.02 -0.09 -1.18 16
14 C -0.13 -2.01 5.85 -25.23 -0.15 -2.16 16
15 C 0.17 3.77 5.34 -2.30 -0.01 3.76 16
16 N -0.60 -14.05 3.41 -170.41 -0.58 -14.63 16
17 C -0.23 -6.17 10.22 -15.06 -0.15 -6.33 16
18 H 0.08 1.92 7.84 -52.49 -0.41 1.51 16
19 C 0.00 -0.09 5.39 -17.43 -0.09 -0.19 16
20 N -0.92 -25.84 10.87 55.49 0.60 -25.23 16
21 Si 0.91 21.26 29.56 -169.99 -5.03 16.23 16
22 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16
23 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16
24 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16
25 C 0.15 2.70 6.51 -3.65 -0.02 2.68 16
26 C 0.13 1.77 6.03 -3.65 -0.02 1.75 16
27 C -0.21 -2.65 9.53 -39.03 -0.37 -3.02 16
28 C 0.40 5.57 6.78 -37.02 -0.25 5.32 16
29 O -0.50 -8.88 17.71 -11.15 -0.20 -9.08 16
30 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16
31 H 0.05 0.16 7.66 -51.93 -0.40 -0.23 16
32 H 0.05 0.17 7.66 -51.93 -0.40 -0.23 16
33 H 0.17 0.40 6.21 -52.48 -0.33 0.08 16
34 H 0.08 0.40 7.57 -51.93 -0.39 0.01 16
35 H 0.08 0.37 6.22 -51.93 -0.32 0.05 16
36 H 0.08 0.71 8.09 -51.93 -0.42 0.29 16
37 H 0.09 0.69 7.78 -51.92 -0.40 0.29 16
38 H 0.06 0.82 7.94 -51.93 -0.41 0.40 16
39 H 0.07 0.93 7.82 -51.93 -0.41 0.52 16
40 H 0.06 1.50 7.27 -51.93 -0.38 1.12 16
41 H 0.03 0.78 7.96 -51.93 -0.41 0.36 16
42 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16
43 H 0.03 0.53 7.86 -51.93 -0.41 0.12 16
44 H 0.03 0.51 7.41 -51.93 -0.39 0.12 16
45 H 0.08 1.22 7.44 -51.93 -0.39 0.84 16
46 H 0.08 1.28 7.78 -51.93 -0.40 0.87 16
47 H 0.17 2.20 7.60 -52.48 -0.40 1.80 16
LS Contribution 374.48 15.07 5.64 5.64
Total: -1.00 -35.90 374.48 -8.25 -44.14
By element:
Atomic # 1 Polarization: 3.89 SS G_CDS: -6.37 Total: -2.48 kcal
Atomic # 6 Polarization: 9.74 SS G_CDS: -1.42 Total: 8.33 kcal
Atomic # 7 Polarization: -50.61 SS G_CDS: -0.60 Total: -51.21 kcal
Atomic # 8 Polarization: -20.18 SS G_CDS: -0.48 Total: -20.65 kcal
Atomic # 14 Polarization: 21.26 SS G_CDS: -5.03 Total: 16.23 kcal
Total LS contribution 5.64 Total: 5.64 kcal
Total: -35.90 -8.25 -44.14 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001041476740.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 36.367 kcal
(2) G-P(sol) polarization free energy of solvation -35.895 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.472 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.246 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.141 kcal
(6) G-S(sol) free energy of system = (1) + (5) -7.774 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.31 seconds