Wall clock time and date at job start Wed Apr 1 2020 05:29:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.36013 * 117.00103 * 2 1 4 4 C 1.35849 * 120.31532 * 359.97438 * 3 2 1 5 5 N 1.35447 * 120.77668 * 179.76045 * 4 3 2 6 6 H 0.97001 * 119.29083 * 180.25220 * 5 4 3 7 7 C 1.36418 * 121.40980 * 0.52494 * 5 4 3 8 8 C 1.48074 * 119.72197 * 179.75233 * 7 5 4 9 9 O 1.21512 * 120.00295 * 188.28385 * 8 7 5 10 10 N 1.34779 * 119.99376 * 8.56185 * 8 7 5 11 11 C 1.47563 * 125.67720 * 5.07872 * 10 8 7 12 12 C 1.55433 * 104.87720 * 156.03861 * 11 10 8 13 13 C 1.53651 * 101.31296 * 35.82996 * 12 11 10 14 14 C 1.53661 * 111.41322 * 87.06503 * 13 12 11 15 15 C 1.55192 * 101.41587 * 155.02579 * 14 13 12 16 16 N 1.47558 * 105.00642 * 324.50460 * 15 14 13 17 17 C 1.36943 * 125.67458 * 203.83023 * 16 15 14 18 18 H 1.07995 * 119.99915 * 165.34444 * 17 16 15 19 19 C 1.38804 * 119.99671 * 345.34603 * 17 16 15 20 20 N 1.31627 * 120.00274 * 350.89079 * 19 17 16 21 21 Si 1.86798 * 119.99940 * 170.89279 * 19 17 16 22 22 H 1.48506 * 109.47456 * 94.95833 * 21 19 17 23 23 H 1.48503 * 109.47501 * 214.95831 * 21 19 17 24 24 H 1.48502 * 109.47281 * 334.96029 * 21 19 17 25 25 C 1.47400 * 108.65164 * 23.86362 * 16 15 14 26 26 C 1.47405 * 125.67211 * 185.39540 * 10 8 7 27 27 C 1.36183 * 120.56012 * 359.47288 * 7 5 4 28 28 C 1.41573 * 120.31224 * 179.97438 * 3 2 1 29 29 O 1.22265 * 120.65720 * 0.02562 * 28 3 2 30 30 H 1.08994 * 109.47484 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47291 * 300.00056 * 1 2 3 32 32 H 1.09005 * 109.46852 * 59.99485 * 1 2 3 33 33 H 1.08003 * 119.61160 * 359.97438 * 4 3 2 34 34 H 1.08993 * 110.33676 * 275.03089 * 11 10 8 35 35 H 1.09003 * 110.33242 * 37.26304 * 11 10 8 36 36 H 1.08999 * 111.25421 * 277.75743 * 12 11 10 37 37 H 1.09008 * 110.94681 * 153.77432 * 12 11 10 38 38 H 1.08998 * 111.03078 * 273.05561 * 14 13 12 39 39 H 1.08992 * 111.03735 * 36.99324 * 14 13 12 40 40 H 1.09002 * 110.32996 * 205.62189 * 15 14 13 41 41 H 1.09000 * 110.42063 * 83.43398 * 15 14 13 42 42 H 0.96996 * 119.99951 * 180.02562 * 20 19 17 43 43 H 1.09001 * 109.99160 * 238.53253 * 25 16 15 44 44 H 1.09004 * 109.98517 * 117.23079 * 25 16 15 45 45 H 1.09005 * 109.98406 * 301.45046 * 26 10 8 46 46 H 1.08999 * 109.98769 * 62.71643 * 26 10 8 47 47 H 1.08003 * 120.40094 * 180.23569 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 1.3129 2.3553 -0.0005 5 7 1.9181 3.5670 0.0043 6 1 1.3733 4.3696 0.0076 7 6 3.2773 3.6829 -0.0008 8 6 3.8996 5.0265 -0.0007 9 8 5.0992 5.1405 -0.1568 10 7 3.1360 6.1226 0.1781 11 6 1.6934 6.1253 0.4885 12 6 1.4377 7.4908 1.1857 13 6 2.4025 8.4069 0.4171 14 6 1.7463 8.9750 -0.8510 15 6 2.5642 10.2767 -1.0633 16 7 2.8529 10.7725 0.2961 17 6 3.1301 12.0713 0.6304 18 1 3.0953 12.3821 1.6641 19 6 3.4558 12.9883 -0.3594 20 7 3.6742 12.5778 -1.5908 21 14 3.5843 14.8049 0.0560 22 1 4.9999 15.1478 0.3453 23 1 3.1051 15.6112 -1.0953 24 1 2.7499 15.1002 1.2485 25 6 2.7942 9.6372 1.2344 26 6 3.6017 7.5184 0.0896 27 6 4.0668 2.5732 -0.0002 28 6 3.4598 1.2936 0.0005 29 8 4.1430 0.2796 0.0006 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 0.2344 2.2974 -0.0014 34 1 1.1086 6.0495 -0.4281 35 1 1.4497 5.3046 1.1631 36 1 1.6971 7.4490 2.2435 37 1 0.4041 7.8097 1.0508 38 1 1.8688 8.2942 -1.6933 39 1 0.6932 9.1982 -0.6802 40 1 1.9749 11.0083 -1.6162 41 1 3.4922 10.0607 -1.5928 42 1 3.9022 13.2185 -2.2824 43 1 2.0454 9.8276 2.0033 44 1 3.7703 9.4834 1.6946 45 1 4.4010 7.6908 0.8104 46 1 3.9579 7.7291 -0.9188 47 1 5.1427 2.6680 -0.0004 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041476740.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:10 Heat of formation + Delta-G solvation = -33.785860 kcal Electronic energy + Delta-G solvation = -30746.888365 eV Core-core repulsion = 26510.743425 eV Total energy + Delta-G solvation = -4236.144939 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.78909 -41.43409 -40.06451 -39.03148 -38.85234 -37.38958 -34.61703 -32.83280 -32.51825 -31.74980 -30.72118 -29.90421 -28.45896 -27.60732 -26.35180 -24.80958 -24.15629 -23.78860 -22.31401 -21.91214 -20.29874 -19.85460 -19.18788 -18.83100 -18.12797 -17.51848 -17.32778 -17.18109 -16.87895 -16.77205 -16.31870 -15.83363 -15.70298 -15.60436 -15.48131 -15.12160 -14.90371 -14.69288 -14.33643 -14.21951 -14.05058 -13.84764 -13.75652 -13.34388 -13.24249 -12.97887 -12.89040 -12.64568 -12.49149 -12.34290 -12.24333 -11.98612 -11.85748 -11.71714 -11.56512 -11.41333 -11.27760 -10.75285 -10.66702 -10.58260 -9.95910 -8.80679 -8.78869 -7.89165 -5.24360 -0.56832 0.12298 1.28154 1.46309 1.46787 1.50935 1.56371 1.67808 2.31033 2.49546 2.52813 2.92740 3.29208 3.37109 3.47810 3.55497 3.60790 3.67133 3.74528 3.83284 4.03245 4.17385 4.27254 4.35657 4.35923 4.42882 4.51268 4.54570 4.63381 4.66729 4.72419 4.79551 4.86053 4.93257 4.98297 5.00648 5.04894 5.15066 5.25251 5.36163 5.40683 5.47365 5.62383 5.74754 5.77078 6.10011 6.21952 6.28225 6.61903 6.89554 7.09341 7.77591 8.43899 9.23000 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.028474 B = 0.002146 C = 0.002063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.114994 B =13044.383778 C =13566.922200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.004 3.996 2 O -0.324 6.324 3 C -0.059 4.059 4 C 0.071 3.929 5 N -0.542 5.542 6 H 0.442 0.558 7 C 0.151 3.849 8 C 0.568 3.432 9 O -0.550 6.550 10 N -0.604 5.604 11 C 0.061 3.939 12 C -0.100 4.100 13 C -0.069 4.069 14 C -0.111 4.111 15 C 0.175 3.825 16 N -0.624 5.624 17 C -0.241 4.241 18 H 0.078 0.922 19 C -0.063 4.063 20 N -0.947 5.947 21 Si 0.973 3.027 22 H -0.291 1.291 23 H -0.294 1.294 24 H -0.265 1.265 25 C 0.144 3.856 26 C 0.131 3.869 27 C -0.233 4.233 28 C 0.379 3.621 29 O -0.569 6.569 30 H 0.110 0.890 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.231 0.769 34 H 0.121 0.879 35 H 0.118 0.882 36 H 0.091 0.909 37 H 0.124 0.876 38 H 0.083 0.917 39 H 0.092 0.908 40 H 0.024 0.976 41 H -0.010 1.010 42 H 0.247 0.753 43 H 0.050 0.950 44 H 0.011 0.989 45 H 0.056 0.944 46 H 0.057 0.943 47 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.010 -19.298 4.763 26.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 O -0.237 6.237 3 C -0.109 4.109 4 C -0.058 4.058 5 N -0.165 5.165 6 H 0.294 0.706 7 C 0.036 3.964 8 C 0.355 3.645 9 O -0.426 6.426 10 N -0.337 5.337 11 C -0.060 4.060 12 C -0.138 4.138 13 C -0.071 4.071 14 C -0.149 4.149 15 C 0.050 3.950 16 N -0.351 5.351 17 C -0.371 4.371 18 H 0.096 0.904 19 C -0.257 4.257 20 N -0.596 5.596 21 Si 0.801 3.199 22 H -0.219 1.219 23 H -0.221 1.221 24 H -0.190 1.190 25 C 0.019 3.981 26 C 0.009 3.991 27 C -0.261 4.261 28 C 0.275 3.725 29 O -0.459 6.459 30 H 0.128 0.872 31 H 0.099 0.901 32 H 0.097 0.903 33 H 0.248 0.752 34 H 0.138 0.862 35 H 0.136 0.864 36 H 0.110 0.890 37 H 0.142 0.858 38 H 0.102 0.898 39 H 0.110 0.890 40 H 0.042 0.958 41 H 0.008 0.992 42 H 0.056 0.944 43 H 0.068 0.932 44 H 0.029 0.971 45 H 0.075 0.925 46 H 0.075 0.925 47 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -16.902 -19.811 4.592 26.443 hybrid contribution 0.942 1.766 -0.269 2.020 sum -15.960 -18.044 4.322 24.475 Atomic orbital electron populations 1.23537 0.76120 1.06102 1.03225 1.86241 1.23511 1.24562 1.89432 1.20135 0.93470 0.86471 1.10797 1.22401 1.00838 0.82288 1.00229 1.42142 1.04033 1.10646 1.59674 0.70555 1.19794 0.84461 0.93237 0.98903 1.17777 0.85836 0.82881 0.77974 1.90875 1.15434 1.85755 1.50577 1.48666 1.11740 1.05165 1.68096 1.23321 0.79126 1.00944 1.02560 1.22726 1.00861 0.90626 0.99588 1.21369 0.94829 0.93802 0.97066 1.22764 0.99797 0.96079 0.96259 1.21242 0.94714 0.92796 0.86271 1.44904 1.82317 1.03544 1.04319 1.19362 1.39102 0.85108 0.93492 0.90398 1.25679 1.01367 1.02543 0.96128 1.70146 1.53914 1.33651 1.01855 0.85155 0.77468 0.80091 0.77162 1.21878 1.22057 1.18983 1.21321 0.97769 0.86347 0.92674 1.21761 0.97086 0.78973 1.01308 1.22267 1.01909 0.91026 1.10854 1.17256 0.88163 0.89182 0.77934 1.90815 1.67316 1.39112 1.48699 0.87196 0.90102 0.90323 0.75242 0.86187 0.86408 0.89016 0.85751 0.89799 0.88953 0.95788 0.99158 0.94419 0.93236 0.97072 0.92526 0.92502 0.83605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.02 9.81 113.37 1.11 1.13 16 2 O -0.32 -6.29 10.33 -78.57 -0.81 -7.10 16 3 C -0.06 -1.11 6.71 22.54 0.15 -0.96 16 4 C 0.07 0.50 10.22 83.58 0.85 1.35 16 5 N -0.54 -4.27 4.61 -184.21 -0.85 -5.12 16 6 H 0.44 0.43 3.73 -92.71 -0.35 0.08 16 7 C 0.15 2.81 6.66 40.56 0.27 3.08 16 8 C 0.57 13.60 7.81 86.85 0.68 14.28 16 9 O -0.55 -18.86 16.65 -3.75 -0.06 -18.92 16 10 N -0.60 -11.48 3.34 -815.51 -2.72 -14.20 16 11 C 0.06 0.43 4.99 87.01 0.43 0.87 16 12 C -0.10 -1.13 5.94 31.65 0.19 -0.95 16 13 C -0.07 -1.68 0.61 -51.87 -0.03 -1.71 16 14 C -0.11 -2.99 5.85 31.57 0.18 -2.81 16 15 C 0.17 7.74 5.34 86.93 0.46 8.20 16 16 N -0.62 -29.49 3.41 -693.05 -2.36 -31.86 16 17 C -0.24 -12.92 10.22 84.03 0.86 -12.06 16 18 H 0.08 4.00 7.84 -2.91 -0.02 3.98 16 19 C -0.06 -3.51 5.39 84.86 0.46 -3.06 16 20 N -0.95 -55.83 10.87 21.65 0.24 -55.60 16 21 Si 0.97 44.53 29.56 68.60 2.03 46.56 16 22 H -0.29 -13.38 7.11 99.48 0.71 -12.68 16 23 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 24 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 25 C 0.14 5.01 6.51 86.14 0.56 5.57 16 26 C 0.13 3.53 6.03 86.14 0.52 4.05 16 27 C -0.23 -6.00 9.53 22.63 0.22 -5.79 16 28 C 0.38 10.94 6.78 23.93 0.16 11.10 16 29 O -0.57 -22.27 17.71 8.94 0.16 -22.12 16 30 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.08 -0.01 7.66 -2.39 -0.02 -0.02 16 32 H 0.08 0.03 7.66 -2.38 -0.02 0.01 16 33 H 0.23 -1.06 6.21 -2.91 -0.02 -1.07 16 34 H 0.12 0.09 7.57 -2.39 -0.02 0.07 16 35 H 0.12 0.07 6.22 -2.39 -0.01 0.05 16 36 H 0.09 0.99 8.09 -2.39 -0.02 0.97 16 37 H 0.12 0.80 7.78 -2.38 -0.02 0.78 16 38 H 0.08 1.93 7.94 -2.39 -0.02 1.91 16 39 H 0.09 2.10 7.82 -2.39 -0.02 2.08 16 40 H 0.02 1.21 7.27 -2.39 -0.02 1.19 16 41 H -0.01 -0.50 7.96 -2.39 -0.02 -0.51 16 42 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 43 H 0.05 1.56 7.86 -2.39 -0.02 1.54 16 44 H 0.01 0.43 7.41 -2.39 -0.02 0.41 16 45 H 0.06 1.79 7.44 -2.38 -0.02 1.77 16 46 H 0.06 1.82 7.78 -2.39 -0.02 1.80 16 47 H 0.15 4.31 7.60 -2.91 -0.02 4.29 16 Total: -1.00 -92.40 374.48 3.36 -89.05 By element: Atomic # 1 Polarization: -3.66 SS G_CDS: 0.67 Total: -2.99 kcal Atomic # 6 Polarization: 15.22 SS G_CDS: 7.08 Total: 22.30 kcal Atomic # 7 Polarization: -101.07 SS G_CDS: -5.70 Total: -106.77 kcal Atomic # 8 Polarization: -47.42 SS G_CDS: -0.72 Total: -48.14 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -92.40 3.36 -89.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041476740.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.260 kcal (2) G-P(sol) polarization free energy of solvation -92.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds