Wall clock time and date at job start Wed Apr 1 2020 05:29:10
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42895 * 1
3 3 C 1.36013 * 117.00103 * 2 1
4 4 C 1.35849 * 120.31532 * 359.97438 * 3 2 1
5 5 N 1.35447 * 120.77668 * 179.76045 * 4 3 2
6 6 H 0.97001 * 119.29083 * 180.25220 * 5 4 3
7 7 C 1.36418 * 121.40980 * 0.52494 * 5 4 3
8 8 C 1.48074 * 119.72197 * 179.75233 * 7 5 4
9 9 O 1.21512 * 120.00295 * 188.28385 * 8 7 5
10 10 N 1.34779 * 119.99376 * 8.56185 * 8 7 5
11 11 C 1.47563 * 125.67720 * 5.07872 * 10 8 7
12 12 C 1.55433 * 104.87720 * 156.03861 * 11 10 8
13 13 C 1.53651 * 101.31296 * 35.82996 * 12 11 10
14 14 C 1.53661 * 111.41322 * 87.06503 * 13 12 11
15 15 C 1.55192 * 101.41587 * 155.02579 * 14 13 12
16 16 N 1.47558 * 105.00642 * 324.50460 * 15 14 13
17 17 C 1.36943 * 125.67458 * 203.83023 * 16 15 14
18 18 H 1.07995 * 119.99915 * 165.34444 * 17 16 15
19 19 C 1.38804 * 119.99671 * 345.34603 * 17 16 15
20 20 N 1.31627 * 120.00274 * 350.89079 * 19 17 16
21 21 Si 1.86798 * 119.99940 * 170.89279 * 19 17 16
22 22 H 1.48506 * 109.47456 * 94.95833 * 21 19 17
23 23 H 1.48503 * 109.47501 * 214.95831 * 21 19 17
24 24 H 1.48502 * 109.47281 * 334.96029 * 21 19 17
25 25 C 1.47400 * 108.65164 * 23.86362 * 16 15 14
26 26 C 1.47405 * 125.67211 * 185.39540 * 10 8 7
27 27 C 1.36183 * 120.56012 * 359.47288 * 7 5 4
28 28 C 1.41573 * 120.31224 * 179.97438 * 3 2 1
29 29 O 1.22265 * 120.65720 * 0.02562 * 28 3 2
30 30 H 1.08994 * 109.47484 * 179.97438 * 1 2 3
31 31 H 1.08997 * 109.47291 * 300.00056 * 1 2 3
32 32 H 1.09005 * 109.46852 * 59.99485 * 1 2 3
33 33 H 1.08003 * 119.61160 * 359.97438 * 4 3 2
34 34 H 1.08993 * 110.33676 * 275.03089 * 11 10 8
35 35 H 1.09003 * 110.33242 * 37.26304 * 11 10 8
36 36 H 1.08999 * 111.25421 * 277.75743 * 12 11 10
37 37 H 1.09008 * 110.94681 * 153.77432 * 12 11 10
38 38 H 1.08998 * 111.03078 * 273.05561 * 14 13 12
39 39 H 1.08992 * 111.03735 * 36.99324 * 14 13 12
40 40 H 1.09002 * 110.32996 * 205.62189 * 15 14 13
41 41 H 1.09000 * 110.42063 * 83.43398 * 15 14 13
42 42 H 0.96996 * 119.99951 * 180.02562 * 20 19 17
43 43 H 1.09001 * 109.99160 * 238.53253 * 25 16 15
44 44 H 1.09004 * 109.98517 * 117.23079 * 25 16 15
45 45 H 1.09005 * 109.98406 * 301.45046 * 26 10 8
46 46 H 1.08999 * 109.98769 * 62.71643 * 26 10 8
47 47 H 1.08003 * 120.40094 * 180.23569 * 27 7 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4289 0.0000 0.0000
3 6 2.0465 1.2119 0.0000
4 6 1.3129 2.3553 -0.0005
5 7 1.9181 3.5670 0.0043
6 1 1.3733 4.3696 0.0076
7 6 3.2773 3.6829 -0.0008
8 6 3.8996 5.0265 -0.0007
9 8 5.0992 5.1405 -0.1568
10 7 3.1360 6.1226 0.1781
11 6 1.6934 6.1253 0.4885
12 6 1.4377 7.4908 1.1857
13 6 2.4025 8.4069 0.4171
14 6 1.7463 8.9750 -0.8510
15 6 2.5642 10.2767 -1.0633
16 7 2.8529 10.7725 0.2961
17 6 3.1301 12.0713 0.6304
18 1 3.0953 12.3821 1.6641
19 6 3.4558 12.9883 -0.3594
20 7 3.6742 12.5778 -1.5908
21 14 3.5843 14.8049 0.0560
22 1 4.9999 15.1478 0.3453
23 1 3.1051 15.6112 -1.0953
24 1 2.7499 15.1002 1.2485
25 6 2.7942 9.6372 1.2344
26 6 3.6017 7.5184 0.0896
27 6 4.0668 2.5732 -0.0002
28 6 3.4598 1.2936 0.0005
29 8 4.1430 0.2796 0.0006
30 1 -0.3634 -1.0276 -0.0005
31 1 -0.3634 0.5138 0.8899
32 1 -0.3633 0.5139 -0.8900
33 1 0.2344 2.2974 -0.0014
34 1 1.1086 6.0495 -0.4281
35 1 1.4497 5.3046 1.1631
36 1 1.6971 7.4490 2.2435
37 1 0.4041 7.8097 1.0508
38 1 1.8688 8.2942 -1.6933
39 1 0.6932 9.1982 -0.6802
40 1 1.9749 11.0083 -1.6162
41 1 3.4922 10.0607 -1.5928
42 1 3.9022 13.2185 -2.2824
43 1 2.0454 9.8276 2.0033
44 1 3.7703 9.4834 1.6946
45 1 4.4010 7.6908 0.8104
46 1 3.9579 7.7291 -0.9188
47 1 5.1427 2.6680 -0.0004
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001041476740.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:29:10
Heat of formation + Delta-G solvation = -33.785860 kcal
Electronic energy + Delta-G solvation = -30746.888365 eV
Core-core repulsion = 26510.743425 eV
Total energy + Delta-G solvation = -4236.144939 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 347.168 amu
Computer time = 1.14 seconds
Orbital eigenvalues (eV)
-42.78909 -41.43409 -40.06451 -39.03148 -38.85234 -37.38958 -34.61703 -32.83280
-32.51825 -31.74980 -30.72118 -29.90421 -28.45896 -27.60732 -26.35180 -24.80958
-24.15629 -23.78860 -22.31401 -21.91214 -20.29874 -19.85460 -19.18788 -18.83100
-18.12797 -17.51848 -17.32778 -17.18109 -16.87895 -16.77205 -16.31870 -15.83363
-15.70298 -15.60436 -15.48131 -15.12160 -14.90371 -14.69288 -14.33643 -14.21951
-14.05058 -13.84764 -13.75652 -13.34388 -13.24249 -12.97887 -12.89040 -12.64568
-12.49149 -12.34290 -12.24333 -11.98612 -11.85748 -11.71714 -11.56512 -11.41333
-11.27760 -10.75285 -10.66702 -10.58260 -9.95910 -8.80679 -8.78869 -7.89165
-5.24360 -0.56832 0.12298 1.28154 1.46309 1.46787 1.50935 1.56371
1.67808 2.31033 2.49546 2.52813 2.92740 3.29208 3.37109 3.47810
3.55497 3.60790 3.67133 3.74528 3.83284 4.03245 4.17385 4.27254
4.35657 4.35923 4.42882 4.51268 4.54570 4.63381 4.66729 4.72419
4.79551 4.86053 4.93257 4.98297 5.00648 5.04894 5.15066 5.25251
5.36163 5.40683 5.47365 5.62383 5.74754 5.77078 6.10011 6.21952
6.28225 6.61903 6.89554 7.09341 7.77591 8.43899 9.23000
Molecular weight = 347.17amu
Principal moments of inertia in cm(-1)
A = 0.028474 B = 0.002146 C = 0.002063
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 983.114994 B =13044.383778 C =13566.922200
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.004 3.996
2 O -0.324 6.324
3 C -0.059 4.059
4 C 0.071 3.929
5 N -0.542 5.542
6 H 0.442 0.558
7 C 0.151 3.849
8 C 0.568 3.432
9 O -0.550 6.550
10 N -0.604 5.604
11 C 0.061 3.939
12 C -0.100 4.100
13 C -0.069 4.069
14 C -0.111 4.111
15 C 0.175 3.825
16 N -0.624 5.624
17 C -0.241 4.241
18 H 0.078 0.922
19 C -0.063 4.063
20 N -0.947 5.947
21 Si 0.973 3.027
22 H -0.291 1.291
23 H -0.294 1.294
24 H -0.265 1.265
25 C 0.144 3.856
26 C 0.131 3.869
27 C -0.233 4.233
28 C 0.379 3.621
29 O -0.569 6.569
30 H 0.110 0.890
31 H 0.081 0.919
32 H 0.078 0.922
33 H 0.231 0.769
34 H 0.121 0.879
35 H 0.118 0.882
36 H 0.091 0.909
37 H 0.124 0.876
38 H 0.083 0.917
39 H 0.092 0.908
40 H 0.024 0.976
41 H -0.010 1.010
42 H 0.247 0.753
43 H 0.050 0.950
44 H 0.011 0.989
45 H 0.056 0.944
46 H 0.057 0.943
47 H 0.146 0.854
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -18.010 -19.298 4.763 26.823
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.090 4.090
2 O -0.237 6.237
3 C -0.109 4.109
4 C -0.058 4.058
5 N -0.165 5.165
6 H 0.294 0.706
7 C 0.036 3.964
8 C 0.355 3.645
9 O -0.426 6.426
10 N -0.337 5.337
11 C -0.060 4.060
12 C -0.138 4.138
13 C -0.071 4.071
14 C -0.149 4.149
15 C 0.050 3.950
16 N -0.351 5.351
17 C -0.371 4.371
18 H 0.096 0.904
19 C -0.257 4.257
20 N -0.596 5.596
21 Si 0.801 3.199
22 H -0.219 1.219
23 H -0.221 1.221
24 H -0.190 1.190
25 C 0.019 3.981
26 C 0.009 3.991
27 C -0.261 4.261
28 C 0.275 3.725
29 O -0.459 6.459
30 H 0.128 0.872
31 H 0.099 0.901
32 H 0.097 0.903
33 H 0.248 0.752
34 H 0.138 0.862
35 H 0.136 0.864
36 H 0.110 0.890
37 H 0.142 0.858
38 H 0.102 0.898
39 H 0.110 0.890
40 H 0.042 0.958
41 H 0.008 0.992
42 H 0.056 0.944
43 H 0.068 0.932
44 H 0.029 0.971
45 H 0.075 0.925
46 H 0.075 0.925
47 H 0.164 0.836
Dipole moment (debyes) X Y Z Total
from point charges -16.902 -19.811 4.592 26.443
hybrid contribution 0.942 1.766 -0.269 2.020
sum -15.960 -18.044 4.322 24.475
Atomic orbital electron populations
1.23537 0.76120 1.06102 1.03225 1.86241 1.23511 1.24562 1.89432
1.20135 0.93470 0.86471 1.10797 1.22401 1.00838 0.82288 1.00229
1.42142 1.04033 1.10646 1.59674 0.70555 1.19794 0.84461 0.93237
0.98903 1.17777 0.85836 0.82881 0.77974 1.90875 1.15434 1.85755
1.50577 1.48666 1.11740 1.05165 1.68096 1.23321 0.79126 1.00944
1.02560 1.22726 1.00861 0.90626 0.99588 1.21369 0.94829 0.93802
0.97066 1.22764 0.99797 0.96079 0.96259 1.21242 0.94714 0.92796
0.86271 1.44904 1.82317 1.03544 1.04319 1.19362 1.39102 0.85108
0.93492 0.90398 1.25679 1.01367 1.02543 0.96128 1.70146 1.53914
1.33651 1.01855 0.85155 0.77468 0.80091 0.77162 1.21878 1.22057
1.18983 1.21321 0.97769 0.86347 0.92674 1.21761 0.97086 0.78973
1.01308 1.22267 1.01909 0.91026 1.10854 1.17256 0.88163 0.89182
0.77934 1.90815 1.67316 1.39112 1.48699 0.87196 0.90102 0.90323
0.75242 0.86187 0.86408 0.89016 0.85751 0.89799 0.88953 0.95788
0.99158 0.94419 0.93236 0.97072 0.92526 0.92502 0.83605
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.00 0.02 9.81 113.37 1.11 1.13 16
2 O -0.32 -6.29 10.33 -78.57 -0.81 -7.10 16
3 C -0.06 -1.11 6.71 22.54 0.15 -0.96 16
4 C 0.07 0.50 10.22 83.58 0.85 1.35 16
5 N -0.54 -4.27 4.61 -184.21 -0.85 -5.12 16
6 H 0.44 0.43 3.73 -92.71 -0.35 0.08 16
7 C 0.15 2.81 6.66 40.56 0.27 3.08 16
8 C 0.57 13.60 7.81 86.85 0.68 14.28 16
9 O -0.55 -18.86 16.65 -3.75 -0.06 -18.92 16
10 N -0.60 -11.48 3.34 -815.51 -2.72 -14.20 16
11 C 0.06 0.43 4.99 87.01 0.43 0.87 16
12 C -0.10 -1.13 5.94 31.65 0.19 -0.95 16
13 C -0.07 -1.68 0.61 -51.87 -0.03 -1.71 16
14 C -0.11 -2.99 5.85 31.57 0.18 -2.81 16
15 C 0.17 7.74 5.34 86.93 0.46 8.20 16
16 N -0.62 -29.49 3.41 -693.05 -2.36 -31.86 16
17 C -0.24 -12.92 10.22 84.03 0.86 -12.06 16
18 H 0.08 4.00 7.84 -2.91 -0.02 3.98 16
19 C -0.06 -3.51 5.39 84.86 0.46 -3.06 16
20 N -0.95 -55.83 10.87 21.65 0.24 -55.60 16
21 Si 0.97 44.53 29.56 68.60 2.03 46.56 16
22 H -0.29 -13.38 7.11 99.48 0.71 -12.68 16
23 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16
24 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16
25 C 0.14 5.01 6.51 86.14 0.56 5.57 16
26 C 0.13 3.53 6.03 86.14 0.52 4.05 16
27 C -0.23 -6.00 9.53 22.63 0.22 -5.79 16
28 C 0.38 10.94 6.78 23.93 0.16 11.10 16
29 O -0.57 -22.27 17.71 8.94 0.16 -22.12 16
30 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16
31 H 0.08 -0.01 7.66 -2.39 -0.02 -0.02 16
32 H 0.08 0.03 7.66 -2.38 -0.02 0.01 16
33 H 0.23 -1.06 6.21 -2.91 -0.02 -1.07 16
34 H 0.12 0.09 7.57 -2.39 -0.02 0.07 16
35 H 0.12 0.07 6.22 -2.39 -0.01 0.05 16
36 H 0.09 0.99 8.09 -2.39 -0.02 0.97 16
37 H 0.12 0.80 7.78 -2.38 -0.02 0.78 16
38 H 0.08 1.93 7.94 -2.39 -0.02 1.91 16
39 H 0.09 2.10 7.82 -2.39 -0.02 2.08 16
40 H 0.02 1.21 7.27 -2.39 -0.02 1.19 16
41 H -0.01 -0.50 7.96 -2.39 -0.02 -0.51 16
42 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16
43 H 0.05 1.56 7.86 -2.39 -0.02 1.54 16
44 H 0.01 0.43 7.41 -2.39 -0.02 0.41 16
45 H 0.06 1.79 7.44 -2.38 -0.02 1.77 16
46 H 0.06 1.82 7.78 -2.39 -0.02 1.80 16
47 H 0.15 4.31 7.60 -2.91 -0.02 4.29 16
Total: -1.00 -92.40 374.48 3.36 -89.05
By element:
Atomic # 1 Polarization: -3.66 SS G_CDS: 0.67 Total: -2.99 kcal
Atomic # 6 Polarization: 15.22 SS G_CDS: 7.08 Total: 22.30 kcal
Atomic # 7 Polarization: -101.07 SS G_CDS: -5.70 Total: -106.77 kcal
Atomic # 8 Polarization: -47.42 SS G_CDS: -0.72 Total: -48.14 kcal
Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal
Total: -92.40 3.36 -89.05 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001041476740.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 55.260 kcal
(2) G-P(sol) polarization free energy of solvation -92.405 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.145 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.359 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.046 kcal
(6) G-S(sol) free energy of system = (1) + (5) -33.786 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.14 seconds