Wall clock time and date at job start Wed Apr 1 2020 05:21:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35505 * 116.99858 * 2 1 4 4 C 1.39211 * 120.90103 * 0.26914 * 3 2 1 5 5 C 1.37904 * 119.38936 * 180.30265 * 4 3 2 6 6 N 1.32075 * 121.28930 * 359.69601 * 5 4 3 7 7 C 1.32187 * 121.98332 * 0.02562 * 6 5 4 8 8 O 1.35423 * 119.77818 * 179.97438 * 7 6 5 9 9 C 1.40294 * 120.43957 * 359.97438 * 7 6 5 10 10 C 1.47230 * 120.64887 * 180.02562 * 9 7 6 11 11 O 1.21627 * 120.00019 * 89.99650 * 10 9 7 12 12 N 1.34777 * 120.00059 * 270.00274 * 10 9 7 13 13 C 1.48266 * 127.72406 * 359.96737 * 12 10 9 14 14 C 1.54760 * 104.67382 * 141.29040 * 13 12 10 15 15 C 1.52879 * 104.40643 * 23.63901 * 14 13 12 16 16 C 1.53707 * 111.74756 * 237.42374 * 15 14 13 17 17 C 1.54586 * 102.95098 * 273.44701 * 16 15 14 18 18 N 1.47139 * 107.32940 * 339.04176 * 17 16 15 19 19 C 1.36942 * 125.60313 * 179.08879 * 18 17 16 20 20 H 1.07998 * 119.99192 * 179.97438 * 19 18 17 21 21 C 1.38812 * 119.99950 * 359.97159 * 19 18 17 22 22 N 1.31615 * 120.00294 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 119.99540 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47467 * 0.02562 * 23 21 19 25 25 H 1.48508 * 109.46855 * 120.00091 * 23 21 19 26 26 H 1.48496 * 109.47277 * 239.99591 * 23 21 19 27 27 C 1.47708 * 108.78545 * 359.06280 * 18 17 16 28 28 C 1.48491 * 127.71944 * 179.97438 * 12 10 9 29 29 H 1.09003 * 109.46909 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47405 * 299.99837 * 1 2 3 31 31 H 1.09001 * 109.47369 * 60.00467 * 1 2 3 32 32 H 1.07998 * 120.30415 * 0.04239 * 4 3 2 33 33 H 1.07999 * 119.35519 * 179.72381 * 5 4 3 34 34 H 0.96695 * 114.00180 * 269.97783 * 8 7 6 35 35 H 1.09005 * 110.39272 * 22.49972 * 13 12 10 36 36 H 1.08996 * 110.50143 * 260.14186 * 13 12 10 37 37 H 1.08998 * 110.44793 * 264.90340 * 14 13 12 38 38 H 1.09004 * 110.54857 * 142.42302 * 14 13 12 39 39 H 1.09002 * 110.74940 * 155.03206 * 16 15 14 40 40 H 1.08999 * 110.74824 * 31.86685 * 16 15 14 41 41 H 1.08997 * 109.86768 * 98.47246 * 17 16 15 42 42 H 1.08992 * 109.87275 * 219.45909 * 17 16 15 43 43 H 0.97001 * 120.00142 * 179.97438 * 22 21 19 44 44 H 1.09007 * 110.38406 * 141.40179 * 27 18 17 45 45 H 1.08995 * 110.38778 * 263.77636 * 27 18 17 46 46 H 1.08997 * 110.47466 * 99.56513 * 28 12 10 47 47 H 1.08996 * 110.47310 * 336.95014 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0441 1.2074 0.0000 4 6 1.3043 2.3867 0.0056 5 6 1.9625 3.5985 -0.0009 6 7 3.2817 3.6625 -0.0064 7 6 4.0354 2.5766 -0.0064 8 8 5.3845 2.6943 -0.0127 9 6 3.4470 1.3030 0.0000 10 6 4.2821 0.0904 0.0006 11 8 4.6313 -0.4070 1.0541 12 7 4.6597 -0.4683 -1.1664 13 6 4.3350 -0.0101 -2.5386 14 6 5.6317 -0.2491 -3.3488 15 6 6.3682 -1.3423 -2.5743 16 6 7.7745 -0.8904 -2.1495 17 6 8.6387 -1.2431 -3.3818 18 7 7.9092 -2.2633 -4.1512 19 6 8.3301 -2.8286 -5.3253 20 1 7.7200 -3.5729 -5.8153 21 6 9.5407 -2.4448 -5.8856 22 7 10.2839 -1.5373 -5.2887 23 14 10.1151 -3.2164 -7.4868 24 1 9.1056 -4.2013 -7.9519 25 1 10.2827 -2.1575 -8.5144 26 1 11.4132 -3.9033 -7.2677 27 6 6.6486 -2.5779 -3.4485 28 6 5.4940 -1.6805 -1.3653 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 0.2249 2.3528 0.0107 33 1 1.3880 4.5130 -0.0011 34 1 5.7725 2.7254 -0.8978 35 1 4.0794 1.0495 -2.5347 36 1 3.5148 -0.5965 -2.9527 37 1 6.2307 0.6607 -3.3858 38 1 5.3956 -0.5899 -4.3569 39 1 8.1093 -1.4435 -1.2720 40 1 7.7941 0.1825 -1.9584 41 1 8.7900 -0.3546 -3.9947 42 1 9.6016 -1.6382 -3.0582 43 1 11.1301 -1.2694 -5.6800 44 1 5.8411 -2.7264 -4.1655 45 1 6.7720 -3.4636 -2.8254 46 1 4.8655 -2.5449 -1.5792 47 1 6.1128 -1.8657 -0.4873 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041788592.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:55 Heat of formation + Delta-G solvation = -27.893685 kcal Electronic energy + Delta-G solvation = -31558.547136 eV Core-core repulsion = 27322.657701 eV Total energy + Delta-G solvation = -4235.889435 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.41188 -39.93749 -39.16742 -38.16590 -37.06077 -35.66338 -32.80761 -32.11238 -30.95905 -30.16098 -29.33719 -28.47226 -27.97695 -25.94202 -24.75026 -23.49746 -23.18325 -22.62641 -20.26501 -20.03164 -19.43429 -18.82193 -17.95529 -17.57658 -17.36422 -16.72360 -16.34549 -15.92335 -15.63763 -15.44906 -15.10827 -14.73413 -14.68920 -14.15236 -13.92127 -13.74297 -13.67173 -13.30470 -12.88270 -12.74084 -12.52821 -12.17641 -12.10221 -12.06118 -12.01929 -11.90544 -11.56747 -11.27827 -11.06578 -10.88318 -10.76933 -10.38396 -10.18630 -10.01723 -9.92280 -9.81468 -9.70917 -9.61108 -9.42100 -9.29235 -8.64383 -8.59622 -6.82618 -5.71123 -3.04557 0.41347 0.78695 2.47184 2.52537 2.85755 3.13898 3.39147 3.40028 3.44788 3.47243 4.07787 4.32704 4.44525 4.49080 4.52916 4.63775 4.64363 4.75450 4.87720 4.98377 4.99293 5.06169 5.19831 5.28423 5.41965 5.44455 5.47877 5.55880 5.79643 5.80631 5.87983 5.93545 5.97255 6.04729 6.23907 6.36979 6.40309 6.52062 6.62022 6.63509 6.72061 6.84514 7.13624 7.49463 7.55428 7.57073 7.64516 7.83836 8.12239 8.25556 9.22068 9.82263 10.48530 11.40362 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.019591 B = 0.002656 C = 0.002557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.913784 B =10540.564756 C =10946.401651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.299 6.299 3 C 0.215 3.785 4 C -0.276 4.276 5 C 0.173 3.827 6 N -0.522 5.522 7 C 0.385 3.615 8 O -0.468 6.468 9 C -0.221 4.221 10 C 0.603 3.397 11 O -0.528 6.528 12 N -0.611 5.611 13 C 0.102 3.898 14 C -0.109 4.109 15 C -0.086 4.086 16 C -0.130 4.130 17 C 0.180 3.820 18 N -0.604 5.604 19 C -0.227 4.227 20 H 0.078 0.922 21 C -0.008 4.008 22 N -0.921 5.921 23 Si 0.910 3.090 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.291 1.291 27 C 0.151 3.849 28 C 0.123 3.877 29 H 0.107 0.893 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.149 0.851 33 H 0.169 0.831 34 H 0.409 0.591 35 H 0.066 0.934 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.086 0.914 39 H 0.058 0.942 40 H 0.059 0.941 41 H 0.045 0.955 42 H 0.041 0.959 43 H 0.251 0.749 44 H 0.041 0.959 45 H 0.021 0.979 46 H 0.072 0.928 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.253 8.756 8.468 25.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.209 6.209 3 C 0.160 3.840 4 C -0.297 4.297 5 C 0.016 3.984 6 N -0.245 5.245 7 C 0.205 3.795 8 O -0.276 6.276 9 C -0.229 4.229 10 C 0.389 3.611 11 O -0.404 6.404 12 N -0.344 5.344 13 C -0.021 4.021 14 C -0.147 4.147 15 C -0.088 4.088 16 C -0.168 4.168 17 C 0.055 3.945 18 N -0.330 5.330 19 C -0.355 4.355 20 H 0.095 0.905 21 C -0.205 4.205 22 N -0.568 5.568 23 Si 0.741 3.259 24 H -0.206 1.206 25 H -0.218 1.218 26 H -0.218 1.218 27 C 0.025 3.975 28 C 0.001 3.999 29 H 0.126 0.874 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.167 0.833 33 H 0.186 0.814 34 H 0.269 0.731 35 H 0.085 0.915 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.104 0.896 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.063 0.937 42 H 0.059 0.941 43 H 0.062 0.938 44 H 0.059 0.941 45 H 0.038 0.962 46 H 0.090 0.910 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -21.428 9.068 9.579 25.163 hybrid contribution -0.204 -0.979 -1.350 1.680 sum -21.632 8.089 8.229 24.517 Atomic orbital electron populations 1.23247 0.76952 1.04966 1.01892 1.86111 1.22471 1.25670 1.86629 1.19061 0.90181 0.85282 0.89462 1.22160 1.01934 0.92563 1.13026 1.22429 0.88654 0.97323 0.89956 1.67329 1.07256 1.32056 1.17823 1.18799 0.84873 0.85375 0.90431 1.84737 1.13594 1.95041 1.34201 1.20230 0.91693 0.95564 1.15422 1.16984 0.79143 0.82357 0.82605 1.90819 1.55845 1.63224 1.30474 1.49015 1.51437 1.28882 1.05108 1.22541 0.98625 0.99386 0.81555 1.22321 0.94219 0.99203 0.98956 1.21711 0.95329 0.97315 0.94403 1.22827 0.94208 0.99814 0.99971 1.21189 0.92680 0.92508 0.88085 1.44540 1.18091 1.46299 1.24119 1.19083 1.02227 1.17407 0.96781 0.90452 1.24790 0.97280 0.99272 0.99115 1.69976 1.13601 1.33777 1.39481 0.86068 0.78425 0.78296 0.83098 1.20553 1.21828 1.21805 1.21437 0.90117 0.92908 0.93059 1.22236 0.92687 0.86418 0.98520 0.87427 0.91957 0.91870 0.83338 0.81431 0.73109 0.91533 0.90959 0.90785 0.89584 0.92351 0.92249 0.93665 0.94053 0.93842 0.94126 0.96165 0.90960 0.89720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.83 101.05 0.99 1.12 16 2 O -0.30 -3.13 10.03 -18.21 -0.18 -3.31 16 3 C 0.22 2.33 6.74 -38.32 -0.26 2.07 16 4 C -0.28 -2.09 9.09 -39.34 -0.36 -2.44 16 5 C 0.17 1.39 11.15 -17.57 -0.20 1.19 16 6 N -0.52 -6.01 10.37 -13.06 -0.14 -6.15 16 7 C 0.38 4.93 7.77 -16.63 -0.13 4.80 16 8 O -0.47 -5.99 13.01 -17.96 -0.23 -6.22 16 9 C -0.22 -2.96 4.56 -104.57 -0.48 -3.43 16 10 C 0.60 9.63 6.51 -12.61 -0.08 9.55 16 11 O -0.53 -10.53 17.39 5.25 0.09 -10.44 16 12 N -0.61 -8.70 3.33 -170.89 -0.57 -9.27 16 13 C 0.10 1.20 6.93 -2.14 -0.01 1.18 16 14 C -0.11 -1.53 6.28 -25.87 -0.16 -1.69 16 15 C -0.09 -1.39 0.82 -153.73 -0.13 -1.52 16 16 C -0.13 -2.39 5.83 -25.53 -0.15 -2.54 16 17 C 0.18 4.25 5.34 -2.86 -0.02 4.24 16 18 N -0.60 -14.82 3.41 -170.20 -0.58 -15.40 16 19 C -0.23 -6.15 10.28 -15.06 -0.15 -6.30 16 20 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 21 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 22 N -0.92 -26.68 10.31 55.49 0.57 -26.11 16 23 Si 0.91 21.81 29.55 -169.99 -5.02 16.78 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 25 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 26 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 27 C 0.15 2.94 6.07 -2.89 -0.02 2.92 16 28 C 0.12 1.86 6.19 -2.95 -0.02 1.84 16 29 H 0.11 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.24 7.69 -51.93 -0.40 -0.16 16 31 H 0.06 0.22 7.72 -51.93 -0.40 -0.18 16 32 H 0.15 0.60 6.45 -52.49 -0.34 0.27 16 33 H 0.17 0.72 8.06 -52.49 -0.42 0.30 16 34 H 0.41 3.51 9.06 45.56 0.41 3.92 16 35 H 0.07 0.68 7.45 -51.93 -0.39 0.29 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.07 1.04 7.51 -51.93 -0.39 0.65 16 38 H 0.09 1.27 7.55 -51.93 -0.39 0.88 16 39 H 0.06 1.07 7.73 -51.93 -0.40 0.66 16 40 H 0.06 1.01 7.71 -51.93 -0.40 0.61 16 41 H 0.05 1.17 7.39 -51.93 -0.38 0.79 16 42 H 0.04 1.11 7.50 -51.93 -0.39 0.72 16 43 H 0.25 7.09 8.31 -40.82 -0.34 6.76 16 44 H 0.04 0.76 7.76 -51.93 -0.40 0.35 16 45 H 0.02 0.40 8.06 -51.93 -0.42 -0.02 16 46 H 0.07 1.01 7.95 -51.93 -0.41 0.60 16 47 H 0.08 1.39 7.35 -51.93 -0.38 1.00 16 LS Contribution 382.96 15.07 5.77 5.77 Total: -1.00 -36.21 382.96 -7.45 -43.66 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -5.90 Total: 0.01 kcal Atomic # 6 Polarization: 11.93 SS G_CDS: -1.26 Total: 10.67 kcal Atomic # 7 Polarization: -56.21 SS G_CDS: -0.71 Total: -56.92 kcal Atomic # 8 Polarization: -19.65 SS G_CDS: -0.33 Total: -19.97 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -36.21 -7.45 -43.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041788592.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.766 kcal (2) G-P(sol) polarization free energy of solvation -36.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds