Wall clock time and date at job start Wed Apr 1 2020 05:21:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35505 * 116.99858 * 2 1 4 4 C 1.39211 * 120.90103 * 0.26914 * 3 2 1 5 5 C 1.37904 * 119.38936 * 180.30265 * 4 3 2 6 6 N 1.32075 * 121.28930 * 359.69601 * 5 4 3 7 7 C 1.32187 * 121.98332 * 0.02562 * 6 5 4 8 8 O 1.35423 * 119.77818 * 179.97438 * 7 6 5 9 9 C 1.40294 * 120.43957 * 359.97438 * 7 6 5 10 10 C 1.47230 * 120.64887 * 180.02562 * 9 7 6 11 11 O 1.21627 * 120.00019 * 89.99650 * 10 9 7 12 12 N 1.34777 * 120.00059 * 270.00274 * 10 9 7 13 13 C 1.48266 * 127.72406 * 359.96737 * 12 10 9 14 14 C 1.54760 * 104.67382 * 141.29040 * 13 12 10 15 15 C 1.52879 * 104.40643 * 23.63901 * 14 13 12 16 16 C 1.53707 * 111.74756 * 237.42374 * 15 14 13 17 17 C 1.54586 * 102.95098 * 273.44701 * 16 15 14 18 18 N 1.47139 * 107.32940 * 339.04176 * 17 16 15 19 19 C 1.36942 * 125.60313 * 179.08879 * 18 17 16 20 20 H 1.07998 * 119.99192 * 179.97438 * 19 18 17 21 21 C 1.38812 * 119.99950 * 359.97159 * 19 18 17 22 22 N 1.31615 * 120.00294 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 119.99540 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47467 * 0.02562 * 23 21 19 25 25 H 1.48508 * 109.46855 * 120.00091 * 23 21 19 26 26 H 1.48496 * 109.47277 * 239.99591 * 23 21 19 27 27 C 1.47708 * 108.78545 * 359.06280 * 18 17 16 28 28 C 1.48491 * 127.71944 * 179.97438 * 12 10 9 29 29 H 1.09003 * 109.46909 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47405 * 299.99837 * 1 2 3 31 31 H 1.09001 * 109.47369 * 60.00467 * 1 2 3 32 32 H 1.07998 * 120.30415 * 0.04239 * 4 3 2 33 33 H 1.07999 * 119.35519 * 179.72381 * 5 4 3 34 34 H 0.96695 * 114.00180 * 269.97783 * 8 7 6 35 35 H 1.09005 * 110.39272 * 22.49972 * 13 12 10 36 36 H 1.08996 * 110.50143 * 260.14186 * 13 12 10 37 37 H 1.08998 * 110.44793 * 264.90340 * 14 13 12 38 38 H 1.09004 * 110.54857 * 142.42302 * 14 13 12 39 39 H 1.09002 * 110.74940 * 155.03206 * 16 15 14 40 40 H 1.08999 * 110.74824 * 31.86685 * 16 15 14 41 41 H 1.08997 * 109.86768 * 98.47246 * 17 16 15 42 42 H 1.08992 * 109.87275 * 219.45909 * 17 16 15 43 43 H 0.97001 * 120.00142 * 179.97438 * 22 21 19 44 44 H 1.09007 * 110.38406 * 141.40179 * 27 18 17 45 45 H 1.08995 * 110.38778 * 263.77636 * 27 18 17 46 46 H 1.08997 * 110.47466 * 99.56513 * 28 12 10 47 47 H 1.08996 * 110.47310 * 336.95014 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0441 1.2074 0.0000 4 6 1.3043 2.3867 0.0056 5 6 1.9625 3.5985 -0.0009 6 7 3.2817 3.6625 -0.0064 7 6 4.0354 2.5766 -0.0064 8 8 5.3845 2.6943 -0.0127 9 6 3.4470 1.3030 0.0000 10 6 4.2821 0.0904 0.0006 11 8 4.6313 -0.4070 1.0541 12 7 4.6597 -0.4683 -1.1664 13 6 4.3350 -0.0101 -2.5386 14 6 5.6317 -0.2491 -3.3488 15 6 6.3682 -1.3423 -2.5743 16 6 7.7745 -0.8904 -2.1495 17 6 8.6387 -1.2431 -3.3818 18 7 7.9092 -2.2633 -4.1512 19 6 8.3301 -2.8286 -5.3253 20 1 7.7200 -3.5729 -5.8153 21 6 9.5407 -2.4448 -5.8856 22 7 10.2839 -1.5373 -5.2887 23 14 10.1151 -3.2164 -7.4868 24 1 9.1056 -4.2013 -7.9519 25 1 10.2827 -2.1575 -8.5144 26 1 11.4132 -3.9033 -7.2677 27 6 6.6486 -2.5779 -3.4485 28 6 5.4940 -1.6805 -1.3653 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 0.2249 2.3528 0.0107 33 1 1.3880 4.5130 -0.0011 34 1 5.7725 2.7254 -0.8978 35 1 4.0794 1.0495 -2.5347 36 1 3.5148 -0.5965 -2.9527 37 1 6.2307 0.6607 -3.3858 38 1 5.3956 -0.5899 -4.3569 39 1 8.1093 -1.4435 -1.2720 40 1 7.7941 0.1825 -1.9584 41 1 8.7900 -0.3546 -3.9947 42 1 9.6016 -1.6382 -3.0582 43 1 11.1301 -1.2694 -5.6800 44 1 5.8411 -2.7264 -4.1655 45 1 6.7720 -3.4636 -2.8254 46 1 4.8655 -2.5449 -1.5792 47 1 6.1128 -1.8657 -0.4873 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041788592.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:54 Heat of formation + Delta-G solvation = -57.066799 kcal Electronic energy + Delta-G solvation = -31559.812178 eV Core-core repulsion = 27322.657701 eV Total energy + Delta-G solvation = -4237.154477 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.23869 -41.13677 -39.90909 -39.49776 -37.86401 -37.20588 -34.50182 -33.11824 -31.92925 -31.44990 -30.80368 -29.95555 -28.45954 -27.44203 -26.17665 -24.65279 -23.93163 -23.90791 -22.11269 -21.06167 -20.31119 -20.12418 -18.86835 -18.67311 -18.34848 -18.27612 -17.16629 -16.89671 -16.73631 -16.60504 -16.31897 -15.78923 -15.71677 -15.64797 -15.37906 -15.05465 -14.52516 -14.32628 -14.11391 -13.95655 -13.86587 -13.62523 -13.30465 -13.21418 -12.95390 -12.94112 -12.77670 -12.56179 -12.54212 -12.46090 -12.32634 -11.96509 -11.82513 -11.57173 -11.45002 -11.38851 -11.28159 -10.68285 -10.61674 -10.14823 -10.04441 -9.83692 -8.86045 -7.81776 -5.16829 -0.32379 0.06627 1.37811 1.47844 1.48663 1.58764 1.79080 1.87644 2.41733 2.51764 2.67036 3.22578 3.37090 3.50021 3.62565 3.64271 3.73052 3.78862 3.88335 3.91712 4.18750 4.27461 4.29636 4.30950 4.34758 4.38296 4.49259 4.55139 4.62647 4.66984 4.74377 4.75087 4.83052 4.88366 4.89614 5.00700 5.03817 5.18873 5.23886 5.31349 5.40531 5.49648 5.68066 5.79914 6.04987 6.21676 6.36679 6.43854 6.79266 6.95421 7.12984 7.80394 8.45512 9.28796 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.019591 B = 0.002656 C = 0.002557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.913784 B =10540.564756 C =10946.401651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.326 6.326 3 C 0.210 3.790 4 C -0.257 4.257 5 C 0.176 3.824 6 N -0.543 5.543 7 C 0.373 3.627 8 O -0.488 6.488 9 C -0.250 4.250 10 C 0.604 3.396 11 O -0.581 6.581 12 N -0.608 5.608 13 C 0.113 3.887 14 C -0.105 4.105 15 C -0.072 4.072 16 C -0.118 4.118 17 C 0.193 3.807 18 N -0.623 5.623 19 C -0.235 4.235 20 H 0.085 0.915 21 C -0.068 4.068 22 N -0.952 5.952 23 Si 0.976 3.024 24 H -0.264 1.264 25 H -0.293 1.293 26 H -0.297 1.297 27 C 0.148 3.852 28 C 0.128 3.872 29 H 0.117 0.883 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.191 0.809 33 H 0.210 0.790 34 H 0.421 0.579 35 H 0.087 0.913 36 H 0.093 0.907 37 H 0.072 0.928 38 H 0.084 0.916 39 H 0.057 0.943 40 H 0.074 0.926 41 H 0.015 0.985 42 H -0.002 1.002 43 H 0.245 0.755 44 H 0.056 0.944 45 H 0.022 0.978 46 H 0.089 0.911 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.222 9.606 7.907 29.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.236 6.236 3 C 0.155 3.845 4 C -0.277 4.277 5 C 0.021 3.979 6 N -0.266 5.266 7 C 0.194 3.806 8 O -0.299 6.299 9 C -0.258 4.258 10 C 0.392 3.608 11 O -0.461 6.461 12 N -0.339 5.339 13 C -0.009 4.009 14 C -0.143 4.143 15 C -0.073 4.073 16 C -0.156 4.156 17 C 0.068 3.932 18 N -0.349 5.349 19 C -0.364 4.364 20 H 0.103 0.897 21 C -0.261 4.261 22 N -0.602 5.602 23 Si 0.805 3.195 24 H -0.188 1.188 25 H -0.220 1.220 26 H -0.225 1.225 27 C 0.023 3.977 28 C 0.005 3.995 29 H 0.135 0.865 30 H 0.096 0.904 31 H 0.104 0.896 32 H 0.208 0.792 33 H 0.227 0.773 34 H 0.283 0.717 35 H 0.106 0.894 36 H 0.111 0.889 37 H 0.091 0.909 38 H 0.102 0.898 39 H 0.075 0.925 40 H 0.093 0.907 41 H 0.033 0.967 42 H 0.016 0.984 43 H 0.054 0.946 44 H 0.074 0.926 45 H 0.039 0.961 46 H 0.107 0.893 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -25.457 9.909 8.990 28.759 hybrid contribution 0.926 -1.266 -1.155 1.948 sum -24.531 8.643 7.835 27.164 Atomic orbital electron populations 1.23609 0.74368 1.06362 1.03743 1.86083 1.25206 1.25911 1.86449 1.19238 0.89487 0.86581 0.89217 1.22556 1.03709 0.90890 1.10583 1.23213 0.87681 0.99240 0.87765 1.67398 1.08929 1.31474 1.18814 1.18872 0.84773 0.85684 0.91298 1.84692 1.14449 1.95145 1.35601 1.20120 0.92783 0.94242 1.18619 1.17434 0.78657 0.82717 0.81980 1.90776 1.58021 1.64984 1.32296 1.49034 1.50684 1.28314 1.05901 1.22595 0.97676 1.01140 0.79495 1.22270 0.95115 0.98112 0.98825 1.21542 0.94449 0.96646 0.94701 1.22673 0.94708 1.00812 0.97392 1.20870 0.92061 0.90940 0.89376 1.44812 1.19927 1.46266 1.23929 1.19495 1.02259 1.17118 0.97511 0.89675 1.25619 0.97741 1.00220 1.02474 1.70200 1.13695 1.35362 1.40920 0.85037 0.77713 0.77528 0.79225 1.18774 1.21981 1.22477 1.21612 0.88421 0.94214 0.93446 1.22093 0.92794 0.87597 0.96995 0.86509 0.90401 0.89569 0.79235 0.77332 0.71747 0.89435 0.88917 0.90917 0.89786 0.92452 0.90702 0.96664 0.98352 0.94604 0.92580 0.96054 0.89276 0.91356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.08 9.83 113.37 1.11 1.20 16 2 O -0.33 -6.03 10.03 -88.07 -0.88 -6.92 16 3 C 0.21 4.03 6.74 23.09 0.16 4.18 16 4 C -0.26 -2.81 9.09 22.42 0.20 -2.60 16 5 C 0.18 2.16 11.15 84.58 0.94 3.10 16 6 N -0.54 -11.39 10.37 -308.27 -3.20 -14.59 16 7 C 0.37 9.26 7.77 85.14 0.66 9.92 16 8 O -0.49 -12.63 13.01 -87.18 -1.13 -13.77 16 9 C -0.25 -6.41 4.56 -19.83 -0.09 -6.50 16 10 C 0.60 19.19 6.51 86.61 0.56 19.76 16 11 O -0.58 -23.82 17.39 -4.12 -0.07 -23.89 16 12 N -0.61 -16.66 3.33 -812.81 -2.71 -19.37 16 13 C 0.11 2.38 6.93 86.64 0.60 2.98 16 14 C -0.11 -2.80 6.28 31.15 0.20 -2.60 16 15 C -0.07 -2.29 0.82 -51.68 -0.04 -2.33 16 16 C -0.12 -4.42 5.83 31.37 0.18 -4.23 16 17 C 0.19 9.51 5.34 86.80 0.46 9.97 16 18 N -0.62 -31.10 3.41 -692.38 -2.36 -33.46 16 19 C -0.23 -12.85 10.28 84.03 0.86 -11.99 16 20 H 0.09 4.42 7.83 -2.91 -0.02 4.39 16 21 C -0.07 -3.83 5.49 84.86 0.47 -3.36 16 22 N -0.95 -57.34 10.31 21.65 0.22 -57.12 16 23 Si 0.98 45.44 29.55 68.60 2.03 47.47 16 24 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 25 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 26 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 27 C 0.15 5.68 6.07 86.46 0.52 6.21 16 28 C 0.13 3.75 6.19 85.99 0.53 4.29 16 29 H 0.12 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.08 0.28 7.69 -2.39 -0.02 0.26 16 31 H 0.09 0.19 7.72 -2.39 -0.02 0.17 16 32 H 0.19 0.41 6.45 -2.91 -0.02 0.39 16 33 H 0.21 0.68 8.06 -2.91 -0.02 0.66 16 34 H 0.42 7.32 9.06 -74.06 -0.67 6.65 16 35 H 0.09 1.55 7.45 -2.38 -0.02 1.53 16 36 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.07 1.97 7.51 -2.39 -0.02 1.96 16 38 H 0.08 2.32 7.55 -2.39 -0.02 2.31 16 39 H 0.06 2.16 7.73 -2.39 -0.02 2.14 16 40 H 0.07 2.57 7.71 -2.39 -0.02 2.55 16 41 H 0.02 0.83 7.39 -2.39 -0.02 0.81 16 42 H 0.00 -0.10 7.50 -2.39 -0.02 -0.12 16 43 H 0.24 14.39 8.31 -92.71 -0.77 13.62 16 44 H 0.06 1.99 7.76 -2.38 -0.02 1.97 16 45 H 0.02 0.83 8.06 -2.39 -0.02 0.81 16 46 H 0.09 2.35 7.95 -2.39 -0.02 2.33 16 47 H 0.07 2.26 7.35 -2.39 -0.02 2.24 16 Total: -1.00 -83.32 382.96 -0.42 -83.74 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: 0.34 Total: 9.91 kcal Atomic # 6 Polarization: 20.65 SS G_CDS: 7.34 Total: 27.99 kcal Atomic # 7 Polarization: -116.50 SS G_CDS: -8.04 Total: -124.54 kcal Atomic # 8 Polarization: -42.49 SS G_CDS: -2.09 Total: -44.58 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -83.32 -0.42 -83.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041788592.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.674 kcal (2) G-P(sol) polarization free energy of solvation -83.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds